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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURES OF NIPAH VIRUS G ATTACHMENT GLYCOPROTEIN WITH ITS RECEPTOR EPHRIN-B3
Keywords BETA PROPELLER, PROTEIN-RECEPTOR COMPLEX, ENVELOPE PROTEIN, GLYCOPROTEIN, HEMAGGLUTININ, HYDROLASE, MEMBRANE, SIGNAL-AN TRANSMEMBRANE, VIRION, DEVELOPMENTAL PROTEIN, DIFFERENTIATI NEUROGENESIS, HYDROLASE-MEMBRANE PROTEIN COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3D12     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEMAGGLUTININ-NEURAMINIDASE  A 428 3370 0
2  Protein   EPHRIN-B3  B 141 1132 0
3  Protein   HEMAGGLUTININ-NEURAMINIDASE  D 428 3370 0
4  Protein   EPHRIN-B3  E 141 1132 0
5  Ligand    C 5 0 61
6  Ligand    F 7 0 83
7  Ligand    G 2 0 28
8  Ligand    H 5 0 61
9  Ligand    I 7 0 83
10  Ligand    J 2 0 28
11  Ligand   HEMAGGLUTININ-NEURAMINIDASE  A 10 0 59
12  Ligand   EPHRIN-B3  B 2 0 10
13  Ligand   HEMAGGLUTININ-NEURAMINIDASE  D 11 0 64
14  Ligand   EPHRIN-B3  E 1 0 5
15 Water     112 0 112
total       1302 9004 594
Proteins
Unit 1 GLU176 GLY177 VAL178 SER179 ASN180 LEU181 VAL182 GLY183 LEU184 PRO185 ASN186 ASN187 ILE188 CYS189 LEU190 GLN191 LYS192 THR193 SER194 ASN195 GLN196 ILE197 LEU198 LYS199 PRO200 LYS201 LEU202 ILE203 SER204 TYR205 THR206 LEU207 PRO208 VAL209 VAL210 GLY211 GLN212 SER213 GLY214 THR215 CYS216 ILE217 THR218 ASP219 PRO220 LEU221 LEU222 ALA223 MET224 ASP225 GLU226 GLY227 TYR228 PHE229 ALA230 TYR231 SER232 HIS233 LEU234 GLU235 ARG236 ILE237 GLY238 SER239 CYS240 SER241 ARG242 GLY243 VAL244 SER245 LYS246 GLN247 ARG248 ILE249 ILE250 GLY251 VAL252 GLY253 GLU254 VAL255 LEU256 ASP257 ARG258 GLY259 ASP260 GLU261 VAL262 PRO263 SER264 LEU265 PHE266 MET267 THR268 ASN269 VAL270 TRP271 THR272 PRO273 PRO274 ASN275 PRO276 ASN277 THR278 VAL279 TYR280 HIS281 CYS282 SER283 ALA284 VAL285 TYR286 ASN287 ASN288 GLU289 PHE290 TYR291 TYR292 VAL293 LEU294 CYS295 ALA296 VAL297 SER298 THR299 VAL300 GLY301 ASP302 PRO303 ILE304 LEU305 ASN306 SER307 THR308 TYR309 TRP310 SER311 GLY312 SER313 LEU314 MET315 MET316 THR317 ARG318 LEU319 ALA320 VAL321 LYS322 PRO323 LYS324 SER325 ASN326 GLY327 GLY328 GLY329 TYR330 ASN331 GLN332 HIS333 GLN334 LEU335 ALA336 LEU337 ARG338 SER339 ILE340 GLU341 LYS342 GLY343 ARG344 TYR345 ASP346 LYS347 VAL348 MET349 PRO350 TYR351 GLY352 PRO353 SER354 GLY355 ILE356 LYS357 GLN358 GLY359 ASP360 THR361 LEU362 TYR363 PHE364 PRO365 ALA366 VAL367 GLY368 PHE369 LEU370 VAL371 ARG372 THR373 GLU374 PHE375 LYS376 TYR377 ASN378 ASP379 SER380 ASN381 CYS382 PRO383 ILE384 THR385 LYS386 CYS387 GLN388 TYR389 SER390 LYS391 PRO392 GLU393 ASN394 CYS395 ARG396 LEU397 SER398 MET399 GLY400 ILE401 ARG402 PRO403 ASN404 SER405 HIS406 TYR407 ILE408 LEU409 ARG410 SER411 GLY412 LEU413 LEU414 LYS415 TYR416 ASN417 LEU418 SER419 ASP420 GLY421 GLU422 ASN423 PRO424 LYS425 VAL426 VAL427 PHE428 ILE429 GLU430 ILE431 SER432 ASP433 GLN434 ARG435 LEU436 SER437 ILE438 GLY439 SER440 PRO441 SER442 LYS443 ILE444 TYR445 ASP446 SER447 LEU448 GLY449 GLN450 PRO451 VAL452 PHE453 TYR454 GLN455 ALA456 SER457 PHE458 SER459 TRP460 ASP461 THR462 MET463 ILE464 LYS465 PHE466 GLY467 ASP468 VAL469 LEU470 THR471 VAL472 ASN473 PRO474 LEU475 VAL476 VAL477 ASN478 TRP479 ARG480 ASN481 ASN482 THR483 VAL484 ILE485 SER486 ARG487 PRO488 GLY489 GLN490 SER491 GLN492 CYS493 PRO494 ARG495 PHE496 ASN497 THR498 CYS499 PRO500 GLU501 ILE502 CYS503 TRP504 GLU505 GLY506 VAL507 TYR508 ASN509 ASP510 ALA511 PHE512 LEU513 ILE514 ASP515 ARG516 ILE517 ASN518 TRP519 ILE520 SER521 ALA522 GLY523 VAL524 PHE525 LEU526 ASP527 SER528 ASN529 GLN530 THR531 ALA532 GLU533 ASN534 PRO535 VAL536 PHE537 THR538 VAL539 PHE540 LYS541 ASP542 ASN543 GLU544 ILE545 LEU546 TYR547 ARG548 ALA549 GLN550 LEU551 ALA552 SER553 GLU554 ASP555 THR556 ASN557 ALA558 GLN559 LYS560 THR561 ILE562 THR563 ASN564 CYS565 PHE566 LEU567 LEU568 LYS569 ASN570 LYS571 ILE572 TRP573 CYS574 ILE575 SER576 LEU577 VAL578 GLU579 ILE580 TYR581 ASP582 THR583 GLY584 ASP585 ASN586 VAL587 ILE588 ARG589 PRO590 LYS591 LEU592 PHE593 ALA594 VAL595 LYS596 ILE597 PRO598 GLU599 GLN600 CYS601 THR602 ALA603
Unit 2 SER29 LEU30 GLU31 PRO32 VAL33 TYR34 TRP35 ASN36 SER37 ALA38 ASN39 LYS40 ARG41 PHE42 GLN43 ALA44 GLU45 GLY46 GLY47 TYR48 VAL49 LEU50 TYR51 PRO52 GLN53 ILE54 GLY55 ASP56 ARG57 LEU58 ASP59 LEU60 LEU61 CYS62 PRO63 ARG64 ALA65 ARG66 PRO67 PRO68 GLY69 PRO70 HIS71 SER72 SER73 PRO74 SER75 TYR76 GLU77 PHE78 TYR79 LYS80 LEU81 TYR82 LEU83 VAL84 GLU85 GLY86 ALA87 GLN88 GLY89 ARG90 ARG91 CYS92 GLU93 ALA94 PRO95 PRO96 ALA97 PRO98 ASN99 LEU100 LEU101 LEU102 THR103 CYS104 ASP105 ARG106 PRO107 ASP108 LEU109 ASP110 LEU111 ARG112 PHE113 THR114 ILE115 LYS116 PHE117 GLN118 GLU119 TYR120 SER121 PRO122 ASN123 LEU124 TRP125 GLY126 HIS127 GLU128 PHE129 ARG130 SER131 HIS132 HIS133 ASP134 TYR135 TYR136 ILE137 ILE138 ALA139 THR140 SER141 ASP142 GLY143 THR144 ARG145 GLU146 GLY147 LEU148 GLU149 SER150 LEU151 GLN152 GLY153 GLY154 VAL155 CYS156 LEU157 THR158 ARG159 GLY160 MET161 LYS162 VAL163 LEU164 LEU165 ARG166 VAL167 GLY168 GLN169
Unit 3 GLU176 GLY177 VAL178 SER179 ASN180 LEU181 VAL182 GLY183 LEU184 PRO185 ASN186 ASN187 ILE188 CYS189 LEU190 GLN191 LYS192 THR193 SER194 ASN195 GLN196 ILE197 LEU198 LYS199 PRO200 LYS201 LEU202 ILE203 SER204 TYR205 THR206 LEU207 PRO208 VAL209 VAL210 GLY211 GLN212 SER213 GLY214 THR215 CYS216 ILE217 THR218 ASP219 PRO220 LEU221 LEU222 ALA223 MET224 ASP225 GLU226 GLY227 TYR228 PHE229 ALA230 TYR231 SER232 HIS233 LEU234 GLU235 ARG236 ILE237 GLY238 SER239 CYS240 SER241 ARG242 GLY243 VAL244 SER245 LYS246 GLN247 ARG248 ILE249 ILE250 GLY251 VAL252 GLY253 GLU254 VAL255 LEU256 ASP257 ARG258 GLY259 ASP260 GLU261 VAL262 PRO263 SER264 LEU265 PHE266 MET267 THR268 ASN269 VAL270 TRP271 THR272 PRO273 PRO274 ASN275 PRO276 ASN277 THR278 VAL279 TYR280 HIS281 CYS282 SER283 ALA284 VAL285 TYR286 ASN287 ASN288 GLU289 PHE290 TYR291 TYR292 VAL293 LEU294 CYS295 ALA296 VAL297 SER298 THR299 VAL300 GLY301 ASP302 PRO303 ILE304 LEU305 ASN306 SER307 THR308 TYR309 TRP310 SER311 GLY312 SER313 LEU314 MET315 MET316 THR317 ARG318 LEU319 ALA320 VAL321 LYS322 PRO323 LYS324 SER325 ASN326 GLY327 GLY328 GLY329 TYR330 ASN331 GLN332 HIS333 GLN334 LEU335 ALA336 LEU337 ARG338 SER339 ILE340 GLU341 LYS342 GLY343 ARG344 TYR345 ASP346 LYS347 VAL348 MET349 PRO350 TYR351 GLY352 PRO353 SER354 GLY355 ILE356 LYS357 GLN358 GLY359 ASP360 THR361 LEU362 TYR363 PHE364 PRO365 ALA366 VAL367 GLY368 PHE369 LEU370 VAL371 ARG372 THR373 GLU374 PHE375 LYS376 TYR377 ASN378 ASP379 SER380 ASN381 CYS382 PRO383 ILE384 THR385 LYS386 CYS387 GLN388 TYR389 SER390 LYS391 PRO392 GLU393 ASN394 CYS395 ARG396 LEU397 SER398 MET399 GLY400 ILE401 ARG402 PRO403 ASN404 SER405 HIS406 TYR407 ILE408 LEU409 ARG410 SER411 GLY412 LEU413 LEU414 LYS415 TYR416 ASN417 LEU418 SER419 ASP420 GLY421 GLU422 ASN423 PRO424 LYS425 VAL426 VAL427 PHE428 ILE429 GLU430 ILE431 SER432 ASP433 GLN434 ARG435 LEU436 SER437 ILE438 GLY439 SER440 PRO441 SER442 LYS443 ILE444 TYR445 ASP446 SER447 LEU448 GLY449 GLN450 PRO451 VAL452 PHE453 TYR454 GLN455 ALA456 SER457 PHE458 SER459 TRP460 ASP461 THR462 MET463 ILE464 LYS465 PHE466 GLY467 ASP468 VAL469 LEU470 THR471 VAL472 ASN473 PRO474 LEU475 VAL476 VAL477 ASN478 TRP479 ARG480 ASN481 ASN482 THR483 VAL484 ILE485 SER486 ARG487 PRO488 GLY489 GLN490 SER491 GLN492 CYS493 PRO494 ARG495 PHE496 ASN497 THR498 CYS499 PRO500 GLU501 ILE502 CYS503 TRP504 GLU505 GLY506 VAL507 TYR508 ASN509 ASP510 ALA511 PHE512 LEU513 ILE514 ASP515 ARG516 ILE517 ASN518 TRP519 ILE520 SER521 ALA522 GLY523 VAL524 PHE525 LEU526 ASP527 SER528 ASN529 GLN530 THR531 ALA532 GLU533 ASN534 PRO535 VAL536 PHE537 THR538 VAL539 PHE540 LYS541 ASP542 ASN543 GLU544 ILE545 LEU546 TYR547 ARG548 ALA549 GLN550 LEU551 ALA552 SER553 GLU554 ASP555 THR556 ASN557 ALA558 GLN559 LYS560 THR561 ILE562 THR563 ASN564 CYS565 PHE566 LEU567 LEU568 LYS569 ASN570 LYS571 ILE572 TRP573 CYS574 ILE575 SER576 LEU577 VAL578 GLU579 ILE580 TYR581 ASP582 THR583 GLY584 ASP585 ASN586 VAL587 ILE588 ARG589 PRO590 LYS591 LEU592 PHE593 ALA594 VAL595 LYS596 ILE597 PRO598 GLU599 GLN600 CYS601 THR602 ALA603
Unit 4 SER29 LEU30 GLU31 PRO32 VAL33 TYR34 TRP35 ASN36 SER37 ALA38 ASN39 LYS40 ARG41 PHE42 GLN43 ALA44 GLU45 GLY46 GLY47 TYR48 VAL49 LEU50 TYR51 PRO52 GLN53 ILE54 GLY55 ASP56 ARG57 LEU58 ASP59 LEU60 LEU61 CYS62 PRO63 ARG64 ALA65 ARG66 PRO67 PRO68 GLY69 PRO70 HIS71 SER72 SER73 PRO74 SER75 TYR76 GLU77 PHE78 TYR79 LYS80 LEU81 TYR82 LEU83 VAL84 GLU85 GLY86 ALA87 GLN88 GLY89 ARG90 ARG91 CYS92 GLU93 ALA94 PRO95 PRO96 ALA97 PRO98 ASN99 LEU100 LEU101 LEU102 THR103 CYS104 ASP105 ARG106 PRO107 ASP108 LEU109 ASP110 LEU111 ARG112 PHE113 THR114 ILE115 LYS116 PHE117 GLN118 GLU119 TYR120 SER121 PRO122 ASN123 LEU124 TRP125 GLY126 HIS127 GLU128 PHE129 ARG130 SER131 HIS132 HIS133 ASP134 TYR135 TYR136 ILE137 ILE138 ALA139 THR140 SER141 ASP142 GLY143 THR144 ARG145 GLU146 GLY147 LEU148 GLU149 SER150 LEU151 GLN152 GLY153 GLY154 VAL155 CYS156 LEU157 THR158 ARG159 GLY160 MET161 LYS162 VAL163 LEU164 LEU165 ARG166 VAL167 GLY168 GLN169
Ligands
Unit 5 NAG1 NAG2 BMA3 BMA4 MAN5
Unit 6 LXZ1 NGA2 GL03 BGC4 GLC5 BGC6 GLC7
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2 BMA3 BGC4 MAN5
Unit 9 LXB1 NGZ2 GL03 BGC4 GLC5 BGC6 GXL7
Unit 10 NAG1 NAG2
Unit 11 NAG1210 SO41368 SO41369 SO41370 SO41371 SO41372 SO41373 SO41374 SO41375 SO41376
Unit 12 SO4202 SO4203
Unit 13 NAG1310 SO41468 SO41469 SO41470 SO41471 SO41472 SO41473 SO41474 SO41475 SO41476 SO41477
Unit 14 SO4190
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany