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(-) Description

Title :  A BETA/ALPHA-BARREL BUILT BY THE COMBINATION OF FRAGMENTS FROM DIFFERENT FOLDS
 
Authors :  T. A. M. Bharat, S. Eisenbeis, K. Zeth, B. Hocker
Date :  22 Apr 08  (Deposition) - 08 Jul 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  X
Biol. Unit 1:  X  (2x)
Biol. Unit 2:  X  (1x)
Keywords :  Xray, Chey, Hisf, Half Barrel, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. A. Bharat, S. Eisenbeis, K. Zeth, B. Hocker
A Beta Alpha-Barrel Built By The Combination Of Fragments From Different Folds.
Proc. Natl. Acad. Sci. Usa V. 105 9942 2008
PubMed-ID: 18632584  |  Reference-DOI: 10.1073/PNAS.0802202105
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BETA/ALPHA-BARREL PROTEIN BASED ON 1THF AND 1TMY
    ChainsX
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificTHERMOTOGA MARITIMA
    Organism Taxid2336
    Other DetailsRESIDUES 1-11 AND 34-103 FROM 1TMY, 103-253 FROM 1THF

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit X
Biological Unit 1 (2x)X
Biological Unit 2 (1x)X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY X:181 , ALA X:203 , SER X:204 , HOH X:743 , HOH X:744BINDING SITE FOR RESIDUE SO4 X 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CWO)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Gly X:2 -Lys X:3
2Ala X:11 -Thr X:12
3Gly X:14 -Arg X:15
4Ala X:54 -Lys X:55
5Ala X:61 -Met X:62
6Val X:227 -Arg X:228
7His X:235 -His X:236

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CWO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CWO)

(-) Exons   (0, 0)

(no "Exon" information available for 3CWO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain X from PDB  Type:PROTEIN  Length:236
 aligned with HIS6_THEMA | Q9X0C6 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:256
                                                                                                                                                                                                                                                                                    253     
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252|     
           HIS6_THEMA     3 AKRIIACLDVKDGRVVKGTNFENLRDSGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKKHGVNVRLEGL-----   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3cwoX00 X:2-23              7 Ald   olas e class I                                                                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee......--------------.hhhh---hhhh-h...eeee......hhhhhhhhhhhhh....e--eee....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhh...eeeeeeeee....eeeee....eeeeeehhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eeeehhhhhh...hhhhhhhhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cwo X   2 GKRVLIVDDATNGR--------------EAVEK---YKEL-KPDIVTMDITMPEMNGIDAIKEIMKIDPNAKI--IVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKKHGVNVRLEGLLEHHH 237
                                    11   |     -        17  |   | 24 |      33        43        53  |  |  61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      
                                        15             16  20  21 24 |                             56 57                                                                                                                                                                                    
                                                                    25                                                                                                                                                                                                                      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CWO)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CWO)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain X   (HIS6_THEMA | Q9X0C6)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0000107    imidazoleglycerol-phosphate synthase activity    Catalysis of the reaction: phosphoribulosylformimino-AICAR-P + L-glutamine = D-erythro-imidazole-glycerol-phosphate + aminoimidazole carboxamide ribonucleotide + L-glutamate + 2 H(+).
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0000105    histidine biosynthetic process    The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HIS6_THEMA | Q9X0C61gpw 1thf 1vh7 2a0n 2lle 2w6r 2wjz 3og3 3zr4 4ewn 4fx7 4j9j 5tql

(-) Related Entries Specified in the PDB File

1thf 1tmy