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(-) Description

Title :  COMPUTATIONAL DESIGN OF AN EIGHT-STRANDED (BETA/ALPHA)-BARREL FROM FRAGMENTS OF DIFFERENT FOLDS
 
Authors :  M. Coles, V. Truffault, S. Eisenbeis, W. Proffitt, J. Meiler, B. Hocker
Date :  07 Nov 11  (Deposition) - 21 Mar 12  (Release) - 21 Mar 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (17x)
NMR Structure *:  A  (1x)
Keywords :  (Beta/Alpha)8-Barrel, Tim-Barrel, Chimeric Protein, Computationally Designed Protein, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Eisenbeis, W. Proffitt, M. Coles, V. Truffault, S. Shanmugaratnam J. Meiler, B. Hocker
Potential Of Fragment Recombination For Rational Design Of Proteins.
J. Am. Chem. Soc. V. 134 4019 2012
PubMed-ID: 22329686  |  Reference-DOI: 10.1021/JA211657K

(-) Compounds

Molecule 1 - CHEMOTAXIS PROTEIN CHEY, IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF CHIMERA
    ChainsA
    EC Number4.1.3.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System VectorPET 21A
    GeneCHEY, TM_0700, HISF, TM_1036
    MutationYES
    Organism ScientificTHERMOTOGA MARITIMA
    Organism Taxid2336
    SynonymIGP SYNTHASE CYCLASE SUBUNIT, IGP SYNTHASE SUBUNIT HISF, IMGP SYNTHASE SUBUNIT HISF, IGPS SUBUNIT HISF

 Structural Features

(-) Chains, Units

  1
NMR Structure (17x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LLE)

(-) Sites  (0, 0)

(no "Site" information available for 2LLE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LLE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LLE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LLE)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RESPONSE_REGULATORYPS50110 Response regulatory domain profile.CHEY_THEMA4-119  1A:5-139
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RESPONSE_REGULATORYPS50110 Response regulatory domain profile.CHEY_THEMA4-119  1A:5-139

(-) Exons   (0, 0)

(no "Exon" information available for 2LLE)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:234
 aligned with CHEY_THEMA | Q56312 from UniProtKB/Swiss-Prot  Length:120

    Alignment length:256
                                                                                                                                                                                            120                                                                                             
                                                                                                                                103             104         116                          117  |                                                                                             
                                    10        20        30        40        50        60        70        80        90       100  |      -       105       115|        -         -       117  |      -         -         -         -         -         -         -         -         -      
           CHEY_THEMA     1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIV---------------KPFQPSRVVEALN----------------------------KVSK---------------------------------------------------------------------------------------------   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..----------------------..hhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhh...eeeeeeeeee..eeeeee....eeeeeehhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhh...eeee....hhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---RESPONSE_REGULATORY  PDB: A:5-139 UniProt: 4-119                                                                                                               ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2lle A   1 MGKIVLIVDD----------------------ATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKGFIVNTAAVENPSLITQLAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAAAAASVFHFREIDGRELKEYLKKHGVNLEHHHHHH 234
                                    10         -         -  |     18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228      
                                    10                     11                                                                                                                                                                                                                               

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LLE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LLE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LLE)

(-) Gene Ontology  (13, 14)

NMR Structure(hide GO term definitions)
Chain A   (CHEY_THEMA | Q56312)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0097588    archaeal or bacterial-type flagellum-dependent cell motility    Cell motility due to movement of bacterial- or archaeal-type flagella.
    GO:0006935    chemotaxis    The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CHEY_THEMA | Q563121tmy 1u0s 2tmy 3tmy 4iga 4qwv 4qyw 4tmy
        HIS6_THEMA | Q9X0C61gpw 1thf 1vh7 2a0n 2w6r 2wjz 3cwo 3og3 3zr4 4ewn 4fx7 4j9j 5tql

(-) Related Entries Specified in the PDB File

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