Chain A from PDB Type:PROTEIN Length:234
aligned with RPC1_LAMBD | P03034 from UniProtKB/Swiss-Prot Length:237
Alignment length:236
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231
RPC1_LAMBD 2 STKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQWPEETFG 237
SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhhhhhhhhhhhhhh......hhhhhhhhh.hhhhhhhhh......hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh...............................................eeee....................eeee..........eeeee........eeee......eee..........--...eeeeeeee......... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------HTH_CROC1 PDB: A:18-76 UniProt: 19-77 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3bdn A 1 STKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRGSGQVFLQPLNPQYPMIP--ESCSVVGKVIASQWPEETFG 236
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 | |220 230
214 |
217
Chain B from PDB Type:PROTEIN Length:234
aligned with RPC1_LAMBD | P03034 from UniProtKB/Swiss-Prot Length:237
Alignment length:236
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231
RPC1_LAMBD 2 STKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQWPEETFG 237
SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.......hhhhhhh....hhhhhhhhhhhh.......hhhhhhhhhhhhhh...................................................eee....................eee...........eeeeee...eeeeeeeee....eeee..........--...eeee............. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------HTH_CROC1 PDB: B:18-76 UniProt: 19-77 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3bdn B 1 STKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRGSGQVFLQPLNPQYPMIP--ESCSVVGKVIASQWPEETFG 236
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 | |220 230
214 |
217
Chain C from PDB Type:DNA Length:19
3bdn C 2 ATACCACTGGCGGTGATAT 20
11
Chain D from PDB Type:DNA Length:19
3bdn D 22 ATATCACCGCCAGTGGTAT 40
31
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |