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(-) Description

Title :  X-RAY STRUCTURE OF ACTIVIN IN COMPLEX WITH FSTL3
 
Authors :  T. B. Thompson
Date :  24 Oct 07  (Deposition) - 02 Sep 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.48
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Ligand-Inhibitor Signalling Complex, Cleavage On Pair Of Basic Residues, Glycoprotein, Growth Factor, Hormone, Secreted, Nucleus, Proto-Oncogene, Hormone Regulator Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Stamler, H. T. Keutmann, Y. Sidis, C. Kattamuri, A. Schneyer, T. B. Thompson
The Structure Of Fstl3. Activin A Complex. Differential Binding Of N-Terminal Domains Influences Follistatin-Type Antagonist Specificity.
J. Biol. Chem. V. 283 32831 2008
PubMed-ID: 18768470  |  Reference-DOI: 10.1074/JBC.M801266200

(-) Compounds

Molecule 1 - INHIBIN BETA A CHAIN
    ChainsA, B, E, F
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Taxid9606
    GeneINHBA
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    StrainHEK293F
    SynonymACTIVIN BETA-A CHAIN, ERYTHROID DIFFERENTIATION PROTEIN, EDF
 
Molecule 2 - FOLLISTATIN-LIKE 3
    ChainsC, D, G, H
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Taxid9606
    GeneFSTL3, FLRG
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    StrainHEK293F
    SynonymFOLLISTATIN-RELATED PROTEIN 3, FOLLISTATIN-RELATED GENE PROTEIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)ABCD    
Biological Unit 2 (1x)    EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO4-1Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:27 , TRP A:28 , HIS C:50 , SER D:195 , ARG D:199BINDING SITE FOR RESIDUE EDO A 117
2AC2SOFTWAREARG C:142 , LYS C:143BINDING SITE FOR RESIDUE SO4 C 238
3AC3SOFTWAREASN C:187 , ASN C:189 , ARG C:212BINDING SITE FOR RESIDUE NAG C 239
4AC4SOFTWARETRP B:28 , SER C:195 , ARG C:199BINDING SITE FOR RESIDUE EDO C 240
5AC5SOFTWAREASN G:189 , ARG G:212BINDING SITE FOR RESIDUE NAG G 238
6AC6SOFTWAREASP F:27 , TRP F:28 , SER G:195 , ARG G:199BINDING SITE FOR RESIDUE EDO G 239

(-) SS Bonds  (70, 70)

Asymmetric Unit
No.Residues
1A:4 -A:12
2A:11 -A:81
3A:40 -A:113
4A:44 -A:115
5A:80 -B:80
6B:4 -B:12
7B:11 -B:81
8B:40 -B:113
9B:44 -B:115
10C:12 -C:35
11C:22 -C:66
12C:36 -C:69
13C:73 -C:84
14C:78 -C:93
15C:95 -C:127
16C:99 -C:120
17C:109 -C:141
18C:145 -C:156
19C:150 -C:166
20C:169 -C:203
21C:174 -C:196
22C:185 -C:217
23D:12 -D:35
24D:22 -D:66
25D:36 -D:69
26D:73 -D:84
27D:78 -D:93
28D:95 -D:127
29D:99 -D:120
30D:109 -D:141
31D:145 -D:156
32D:150 -D:166
33D:169 -D:203
34D:174 -D:196
35D:185 -D:217
36E:4 -E:12
37E:11 -E:81
38E:40 -E:113
39E:44 -E:115
40E:80 -F:80
41F:4 -F:12
42F:11 -F:81
43F:40 -F:113
44F:44 -F:115
45G:12 -G:35
46G:22 -G:66
47G:36 -G:69
48G:73 -G:84
49G:78 -G:93
50G:95 -G:127
51G:99 -G:120
52G:109 -G:141
53G:145 -G:156
54G:150 -G:166
55G:169 -G:203
56G:174 -G:196
57G:185 -G:217
58H:12 -H:35
59H:22 -H:66
60H:36 -H:69
61H:73 -H:84
62H:78 -H:93
63H:95 -H:127
64H:99 -H:120
65H:109 -H:141
66H:145 -H:156
67H:150 -H:166
68H:169 -H:203
69H:174 -H:196
70H:185 -H:217

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Ala A:31 -Pro A:32
2Ser A:72 -Pro A:73
3Ala B:31 -Pro B:32
4Ser B:72 -Pro B:73
5Arg C:152 -Pro C:153
6Arg D:152 -Pro D:153
7Ala E:31 -Pro E:32
8Ser E:72 -Pro E:73
9Ala F:31 -Pro F:32
10Ser F:72 -Pro F:73
11Arg G:152 -Pro G:153
12Arg H:152 -Pro H:153

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 4)

Asymmetric Unit (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_072641N386SINHBA_HUMANUnclassified  ---A/B/E/FN76S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_072641N386SINHBA_HUMANUnclassified  ---A/BN76S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_072641N386SINHBA_HUMANUnclassified  ---E/FN76S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 16)

Asymmetric Unit (3, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TBPS51364 TGF-beta binding (TB) domain profile.FSTL3_HUMAN36-95
 
 
 
  4C:10-69
D:10-69
G:10-69
H:10-69
2KAZAL_2PS51465 Kazal domain profile.FSTL3_HUMAN113-169
 
 
 
193-245
 
 
 
  8C:91-143
D:87-143
G:91-143
H:87-143
C:167-218
D:167-218
G:167-218
H:167-218
3TGF_BETA_1PS00250 TGF-beta family signature.INHBA_HUMAN339-354
 
 
 
  4A:29-44
B:29-44
E:29-44
F:29-44
Biological Unit 1 (3, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TBPS51364 TGF-beta binding (TB) domain profile.FSTL3_HUMAN36-95
 
 
 
  2C:10-69
D:10-69
-
-
2KAZAL_2PS51465 Kazal domain profile.FSTL3_HUMAN113-169
 
 
 
193-245
 
 
 
  4C:91-143
D:87-143
-
-
C:167-218
D:167-218
-
-
3TGF_BETA_1PS00250 TGF-beta family signature.INHBA_HUMAN339-354
 
 
 
  2A:29-44
B:29-44
-
-
Biological Unit 2 (3, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TBPS51364 TGF-beta binding (TB) domain profile.FSTL3_HUMAN36-95
 
 
 
  2-
-
G:10-69
H:10-69
2KAZAL_2PS51465 Kazal domain profile.FSTL3_HUMAN113-169
 
 
 
193-245
 
 
 
  4-
-
G:91-143
H:87-143
-
-
G:167-218
H:167-218
3TGF_BETA_1PS00250 TGF-beta family signature.INHBA_HUMAN339-354
 
 
 
  2-
-
E:29-44
F:29-44

(-) Exons   (1, 4)

Asymmetric Unit (1, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002422081ENSE00001410976chr7:41742706-41742603104INHBA_HUMAN-00--
1.2bENST000002422082bENSE00001410336chr7:41740115-41739585531INHBA_HUMAN1-1301300--
1.4cENST000002422084cENSE00001887422chr7:41730140-417247125429INHBA_HUMAN130-4262974A:1-116 (gaps)
B:1-116 (gaps)
E:1-116 (gaps)
F:1-116 (gaps)
116
116
116
116

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:109
 aligned with INHBA_HUMAN | P08476 from UniProtKB/Swiss-Prot  Length:426

    Alignment length:116
                                   320       330       340       350       360       370       380       390       400       410       420      
          INHBA_HUMAN   311 GLECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGCS 426
               SCOP domains d3b4v a_ A: Activin A (Inhibin beta A)                                                                               SCOP domains
               CATH domains 3b4vA 00 A:1-116 Cystine-knot cytokines                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....-.....eee..eee.........eee..eee..eee.......------..hhhhhhhhhhhhhh..........eeeeeeeeeeeeee.....eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------S---------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------TGF_BETA_1      ------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.4c  PDB: A:1-116 (gaps) UniProt: 130-426 [INCOMPLETE]                                                         Transcript 1
                 3b4v A   1 GLECD-KVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHI------SLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGCS 116
                                | | 10        20        30        40       | -    |   60        70        80        90       100       110      
                                5 7                                       48     55                                                             

Chain B from PDB  Type:PROTEIN  Length:114
 aligned with INHBA_HUMAN | P08476 from UniProtKB/Swiss-Prot  Length:426

    Alignment length:116
                                   320       330       340       350       360       370       380       390       400       410       420      
          INHBA_HUMAN   311 GLECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGCS 426
               SCOP domains d3b4 vb_ B: Activin A (Inhibin beta A)                                                                               SCOP domains
               CATH domains 3b4v B00 B:1-116 Cystine-knot cytokines                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-......eee..eeehhhhh....eee..eee..eee..........-....hhhhhhhhhhhh....hhhhh...eeeeeeeeeeeeee.....eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------S---------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------TGF_BETA_1      ------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.4c  PDB: B:1-116 (gaps) UniProt: 130-426 [INCOMPLETE]                                                         Transcript 1
                 3b4v B   1 GLEC-GKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGT-GSSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGCS 116
                               | |  10        20        30        40        50| |     60        70        80        90       100       110      
                               4 6                                           51 |                                                               
                                                                               53                                                               

Chain C from PDB  Type:PROTEIN  Length:206
 aligned with FSTL3_HUMAN | O95633 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:210
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244
          FSTL3_HUMAN    35 GGVCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFLGLVHCLPCKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCA 244
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -------------------------------------------------------------------3b4vC02 C:7    6-142  [code=3.30.60.30, no name defined]           ---------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeeehhhhhh......eeee......hhhhhhhhh.....ee.............eeee.----.eeee............eee....ee.hhhhhhhhhhh......eeee................eeee.....eeee................eee....ee.hhhhhhhhhhhhh....eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -TB  PDB: C:10-69 UniProt: 36-95                             -----------------KAZAL_2  PDB: C:91-143 UniProt: 113-169                  -----------------------KAZAL_2  PDB: C:167-218 UniProt: 193-245             PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3b4v C   9 GGVCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFLGLVHCLPCKDSCDGVECGPGKACRM----PRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCA 218
                                    18        28        38        48        58        68        78       | -  |     98       108       118       128       138       148       158       168       178       188       198       208       218
                                                                                                        86   91                                                                                                                               

Chain D from PDB  Type:PROTEIN  Length:213
 aligned with FSTL3_HUMAN | O95633 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:213
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   
          FSTL3_HUMAN    32 PAPGGVCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFLGLVHCLPCKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCA 244
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------3b4vD02 D:76-142  [code=3.30.60.30, no name defined]               ---------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee......eeeeeeeeehhhhhh......eeee.....hhhhhhhhhh....eee.............eeeee....eeeee............eee....ee.hhhhhhhhhhh......eeee................eeee.....eeee................eee....ee.hhhhhhhhhhhhh....eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----TB  PDB: D:10-69 UniProt: 36-95                             -----------------KAZAL_2  PDB: D:87-143 UniProt: 113-169                  -----------------------KAZAL_2  PDB: D:167-218 UniProt: 193-245             PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b4v D   6 PAPGGVCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFLGLVHCLPCKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCA 218
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215   

Chain E from PDB  Type:PROTEIN  Length:107
 aligned with INHBA_HUMAN | P08476 from UniProtKB/Swiss-Prot  Length:426

    Alignment length:116
                                   320       330       340       350       360       370       380       390       400       410       420      
          INHBA_HUMAN   311 GLECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGCS 426
               SCOP domains d3b4v   e_ E: Activin A (Inhibin beta A)                                                                             SCOP domains
               CATH domains 3b4vE   00 E:1-116 Cystine-knot cytokines                                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....---...eee..eeehhhhh....eee..eee..eee.......------..hhhhhhhhhhhhh...........eeeeeeeeeeeeee.....eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------S---------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------TGF_BETA_1      ------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.4c  PDB: E:1-116 (gaps) UniProt: 130-426 [INCOMPLETE]                                                         Transcript 1
                 3b4v E   1 GLECD---NICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHI------SLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGCS 116
                                |   10        20        30        40       | -    |   60        70        80        90       100       110      
                                5   9                                     48     55                                                             

Chain F from PDB  Type:PROTEIN  Length:114
 aligned with INHBA_HUMAN | P08476 from UniProtKB/Swiss-Prot  Length:426

    Alignment length:116
                                   320       330       340       350       360       370       380       390       400       410       420      
          INHBA_HUMAN   311 GLECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGCS 426
               SCOP domains d3b4 v f_ F: Activin A (Inhibin beta A)                                                                              SCOP domains
               CATH domains 3b4v F 00 F:1-116 Cystine-knot cytokines                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-.-....eee..eeehhhhh....eee..eee..eee...............hhhhhhhhhhhhh...hhhhh...eeeeeeeeeeeeee.....eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------S---------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------TGF_BETA_1      ------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.4c  PDB: F:1-116 (gaps) UniProt: 130-426 [INCOMPLETE]                                                         Transcript 1
                 3b4v F   1 GLEC-G-VNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGCS 116
                               | | |10        20        30        40        50        60        70        80        90       100       110      
                               4 6 8                                                                                                            

Chain G from PDB  Type:PROTEIN  Length:206
 aligned with FSTL3_HUMAN | O95633 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:210
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244
          FSTL3_HUMAN    35 GGVCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFLGLVHCLPCKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCA 244
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -------------------------------------------------------------------3b4vG02 G:7    6-142  [code=3.30.60.30, no name defined]           ---------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeeehhhhhh......eeee......hhhhhhhhh.....ee.............eeee.----.eeee............eee....ee.hhhhhhhhhhh......eeee................eeee.....eeee................eee....ee.hhhhhhhhhhhhh....eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -TB  PDB: G:10-69 UniProt: 36-95                             -----------------KAZAL_2  PDB: G:91-143 UniProt: 113-169                  -----------------------KAZAL_2  PDB: G:167-218 UniProt: 193-245             PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3b4v G   9 GGVCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFLGLVHCLPCKDSCDGVECGPGKACRM----PRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCA 218
                                    18        28        38        48        58        68        78       | -  |     98       108       118       128       138       148       158       168       178       188       198       208       218
                                                                                                        86   91                                                                                                                               

Chain H from PDB  Type:PROTEIN  Length:211
 aligned with FSTL3_HUMAN | O95633 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:213
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   
          FSTL3_HUMAN    32 PAPGGVCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFLGLVHCLPCKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCA 244
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------3b4vH02 H:76  -142  [code=3.30.60.30, no name defined]             ---------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee......eeeeeeeeehhhhhh......eeee......hhhhhhhhh....eee.............eeee..--..eeee............eee....ee.hhhhhhhhhhh......eeee................eeee.....eeee................eee....ee.hhhhhhhhhhhhh....eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----TB  PDB: H:10-69 UniProt: 36-95                             -----------------KAZAL_2  PDB: H:87-143 UniProt: 113-169                  -----------------------KAZAL_2  PDB: H:167-218 UniProt: 193-245             PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b4v H   6 PAPGGVCWLQQGQEATCSLVLQTDVTRAECCASGNIDTAWSNLTHPGNKINLLGFLGLVHCLPCKDSCDGVECGPGKACRML--RPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRHAGSCA 218
                                    15        25        35        45        55        65        75        85 |  |   95       105       115       125       135       145       155       165       175       185       195       205       215   
                                                                                                            87 90                                                                                                                                

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3B4V)

(-) Gene Ontology  (86, 93)

Asymmetric Unit(hide GO term definitions)
Chain A,B,E,F   (INHBA_HUMAN | P08476)
molecular function
    GO:0005125    cytokine activity    Functions to control the survival, growth, differentiation and effector function of tissues and cells.
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
    GO:0005179    hormone activity    The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0034711    inhibin binding    Interacting selectively and non-covalently with an inhibin monomer, any of the polypeptides that combine to form activin and inhibin dimers.
    GO:0017046    peptide hormone binding    Interacting selectively and non-covalently with any peptide with hormonal activity in animals.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0005160    transforming growth factor beta receptor binding    Interacting selectively and non-covalently with the transforming growth factor beta receptor.
    GO:0070699    type II activin receptor binding    Interacting selectively and non-covalently with a type II activin receptor.
biological process
    GO:0000082    G1/S transition of mitotic cell cycle    The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of G1 cyclin-dependent kinase (G1 CDK), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated.
    GO:0097154    GABAergic neuron differentiation    The process in which a neuroblast acquires the specialized structural and functional features of a GABAergic neuron.
    GO:0060395    SMAD protein signal transduction    The cascade of processes by which a signal interacts with a receptor, causing a change in the activity of a SMAD protein, and ultimately effecting a change in the functioning of the cell.
    GO:0032924    activin receptor signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to an activin receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0007050    cell cycle arrest    A regulatory process that halts progression through the cell cycle during one of the normal phases (G1, S, G2, M).
    GO:0048468    cell development    The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0007166    cell surface receptor signaling pathway    A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0007267    cell-cell signaling    Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions.
    GO:0071397    cellular response to cholesterol    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cholesterol stimulus.
    GO:0071372    cellular response to follicle-stimulating hormone stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a follicle-stimulating hormone stimulus.
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0035987    endodermal cell differentiation    The process in which a relatively unspecialized cell acquires the specialized features of an endoderm cell, a cell of the inner of the three germ layers of the embryo.
    GO:0030218    erythrocyte differentiation    The process in which a myeloid precursor cell acquires specializes features of an erythrocyte.
    GO:0097191    extrinsic apoptotic signaling pathway    A series of molecular signals in which a signal is conveyed from the cell surface to trigger the apoptotic death of a cell. The pathway starts with either a ligand binding to a cell surface receptor, or a ligand being withdrawn from a cell surface receptor (e.g. in the case of signaling by dependence receptors), and ends when the execution phase of apoptosis is triggered.
    GO:0061029    eyelid development in camera-type eye    The progression of the eyelid in a camera-type eye from its formation to the mature state. The eyelid is a membranous cover that helps protect and lubricate the eye.
    GO:0040007    growth    The increase in size or mass of an entire organism, a part of an organism or a cell.
    GO:0001942    hair follicle development    The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open.
    GO:0002244    hematopoietic progenitor cell differentiation    The process in which precursor cell type acquires the specialized features of a hematopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells.
    GO:0042541    hemoglobin biosynthetic process    The chemical reactions and pathways resulting in the formation of hemoglobin, an oxygen carrying, conjugated protein containing four heme groups and globin.
    GO:0008584    male gonad development    The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure.
    GO:0001707    mesoderm formation    The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts.
    GO:0048333    mesodermal cell differentiation    The process in which a relatively unspecialized cell acquires the specialized features of a mesoderm cell.
    GO:0045578    negative regulation of B cell differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of B cell differentiation.
    GO:0045786    negative regulation of cell cycle    Any process that stops, prevents or reduces the rate or extent of progression through the cell cycle.
    GO:0030308    negative regulation of cell growth    Any process that stops, prevents, or reduces the frequency, rate, extent or direction of cell growth.
    GO:0008285    negative regulation of cell proliferation    Any process that stops, prevents or reduces the rate or extent of cell proliferation.
    GO:0046882    negative regulation of follicle-stimulating hormone secretion    Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of follicle-stimulating hormone.
    GO:0045077    negative regulation of interferon-gamma biosynthetic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interferon-gamma.
    GO:0045650    negative regulation of macrophage differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of macrophage differentiation.
    GO:0042326    negative regulation of phosphorylation    Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule.
    GO:0007399    nervous system development    The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
    GO:0042476    odontogenesis    The process whose specific outcome is the progression of a tooth or teeth over time, from formation to the mature structure(s). A tooth is any hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food.
    GO:0001541    ovarian follicle development    The process whose specific outcome is the progression of the ovarian follicle over time, from its formation to the mature structure.
    GO:0060021    palate development    The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities.
    GO:0032270    positive regulation of cellular protein metabolic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a protein, occurring at the level of an individual cell.
    GO:0045648    positive regulation of erythrocyte differentiation    Any process that activates or increases the frequency, rate or extent of erythrocyte differentiation.
    GO:2001241    positive regulation of extrinsic apoptotic signaling pathway in absence of ligand    Any process that activates or increases the frequency, rate or extent of extrinsic apoptotic signaling pathway in absence of ligand.
    GO:0046881    positive regulation of follicle-stimulating hormone secretion    Any process that activates or increases the frequency, rate or extent of the regulated release of follicle-stimulating hormone.
    GO:0010628    positive regulation of gene expression    Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0060279    positive regulation of ovulation    Any process that activates or increases the frequency, rate or extent of ovulation, the release of a mature ovum/oocyte from an ovary.
    GO:0010862    positive regulation of pathway-restricted SMAD protein phosphorylation    Any process that increases the rate, frequency or extent of pathway-restricted SMAD protein phosphorylation. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0042701    progesterone secretion    The regulated release of progesterone, a steroid hormone, by the corpus luteum of the ovary and by the placenta.
    GO:0043408    regulation of MAPK cascade    Any process that modulates the frequency, rate or extent of signal transduction mediated by the MAP kinase (MAPK) cascade.
    GO:0046880    regulation of follicle-stimulating hormone secretion    Any process that modulates the frequency, rate or extent of the regulated release of follicle-stimulating hormone.
    GO:0006357    regulation of transcription from RNA polymerase II promoter    Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0021773    striatal medium spiny neuron differentiation    The process in which a relatively unspecialized cell acquires specialized features of a medium spiny neuron residing in the striatum.
cellular component
    GO:0043509    activin A complex    A nonsteroidal regulator, composed of two covalently linked inhibin beta-A subunits (sometimes known as activin beta-A or activin/inhibin beta-A).
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0043512    inhibin A complex    Heterodimeric hormone composed of an inhibin alpha subunit complexed with an inhibin beta-A subunit.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.

Chain C,D,G,H   (FSTL3_HUMAN | O95633)
molecular function
    GO:0048185    activin binding    Interacting selectively and non-covalently with activin, a dimer of inhibin-beta subunits.
    GO:0001968    fibronectin binding    Interacting selectively and non-covalently with a fibronectin, a group of related adhesive glycoproteins of high molecular weight found on the surface of animal cells, connective tissue matrices, and in extracellular fluids.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0030325    adrenal gland development    The process whose specific outcome is the progression of the adrenal gland over time, from its formation to the mature structure. This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells.
    GO:0071248    cellular response to metal ion    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
    GO:0002244    hematopoietic progenitor cell differentiation    The process in which precursor cell type acquires the specialized features of a hematopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells.
    GO:0001822    kidney development    The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and/or excretes the end products of body metabolism in the form of urine.
    GO:0030324    lung development    The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax.
    GO:0008584    male gonad development    The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure.
    GO:0030514    negative regulation of BMP signaling pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of the BMP signaling pathway.
    GO:0032926    negative regulation of activin receptor signaling pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any activin receptor signaling pathway.
    GO:0045671    negative regulation of osteoclast differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of osteoclast differentiation.
    GO:0090101    negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway    Any process that decreases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand.
    GO:0001503    ossification    The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance.
    GO:0022409    positive regulation of cell-cell adhesion    Any process that activates or increases the rate or extent of cell adhesion to another cell.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006357    regulation of transcription from RNA polymerase II promoter    Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0007283    spermatogenesis    The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0044306    neuron projection terminus    The specialized, terminal region of a neuron projection such as an axon or a dendrite.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0030141    secretory granule    A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FSTL3_HUMAN | O956332kcx 3sek
        INHBA_HUMAN | P084761nys 1nyu 1s4y 2arp 2arv 2b0u 2p6a 4mid 5hly 5hlz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3B4V)