3AWE - JenaLib

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Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PTEN-LIKE DOMAIN OF CI-VSP (248-576)

Authors :   M. Matsuda, S. Sakata, K. Takeshita, M. Suzuki, E. Yamashita, Y. Okamur A. Nakagawa

Date :   19 Mar 11 (Deposition) - 04 May 11 (Release) - 21 Dec 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.77

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Ptdins(3, 4, 5)P3, Phosphatase, Ion Channel, Hydrolase, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Matsuda, K. Takeshita, T. Kurokawa, S. Sakata, M. Suzuki, E. Yamashita, Y. Okamura, A. Nakagawa
Crystal Structure Of The Cytoplasmic Phosphatase And Tensin Homolog (Pten)-Like Region Of Ciona Intestinalis Voltage-Sensing Phosphatase Provides Insight Into Substrate Specificity And Redox Regulation Of The Phosphoinositide Phosphatase Activity
J. Biol. Chem. V. 286 23368 2011
PubMed-ID: 21543329 | Reference-DOI: 10.1074/JBC.M110.214361

Molecule 1 - VOLTAGE-SENSOR CONTAINING PHOSPHATASE
	Chains	:	A, B, C
	EC Number	:	3.1.3.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET32
	Expression System Strain	:	C43(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	PTEN-LIKE REGION, RESIDUES 248-576
	Gene	:	CI-VSP
	Organism Common	:	TRANSPARENT SEA SQUIRT
	Organism Scientific	:	CIONA INTESTINALIS
	Organism Taxid	:	7719
	Synonym	:	CI-VSP

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 9)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	NA	1	Ligand/Ion	SODIUM ION
3	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	NA	-1	Ligand/Ion	SODIUM ION
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	NA	-1	Ligand/Ion	SODIUM ION
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 4)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	NA	-1	Ligand/Ion	SODIUM ION
3	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:268 , ASP A:269 , HIS A:270 , LYS A:383	BINDING SITE FOR RESIDUE SO4 A 3
2	AC2	SOFTWARE	ARG A:454 , SER A:515 , LYS A:516 , SER A:517	BINDING SITE FOR RESIDUE SO4 A 7
3	AC3	SOFTWARE	THR B:268 , ASP B:269 , HIS B:270 , LYS B:383	BINDING SITE FOR RESIDUE SO4 B 1
4	AC4	SOFTWARE	ARG B:454 , SER B:515 , LYS B:516 , ARG C:397	BINDING SITE FOR RESIDUE SO4 B 6
5	AC5	SOFTWARE	LYS A:438 , ARG C:545 , GLU C:546 , ASP C:562	BINDING SITE FOR RESIDUE ACY C 1
6	AC6	SOFTWARE	THR C:268 , ASP C:269 , HIS C:270 , LYS C:383	BINDING SITE FOR RESIDUE SO4 C 2
7	AC7	SOFTWARE	LYS B:342 , ARG C:454 , SER C:515 , LYS C:516	BINDING SITE FOR RESIDUE SO4 C 4
8	AC8	SOFTWARE	LYS A:553 , LYS C:440 , CYS C:500 , PRO C:501 , VAL C:502	BINDING SITE FOR RESIDUE SO4 C 5

(no "SS Bond" information available for 3AWE)

(no "Cis Peptide Bond" information available for 3AWE)

(no "SAP(SNP)/Variant" information available for 3AWE)

(no "PROSITE Motif" information available for 3AWE)

(no "Exon" information available for 3AWE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:305
 aligned with Q4W8A1_CIOIN | Q4W8A1 from UniProtKB/TrEMBL  Length:576

    Alignment length:316
                                   266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566      
         Q4W8A1_CIOIN   257 KDGFDLDLTYVTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTVKLTFSD 572
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee....eeee.....-------.hhhhhhhhhhhhh...eeeeeee.....hhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh----.hhhhhh.hhhhhhhhhhhhhhhhhh..........eeeeeeee............eeeeeee..eeeeeee......eeeeee....eeeeee........eeeeeeee.......hhhhh.eeeeee.hhh...eeeee.hhh....hhhhh.......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3awe A 257 KDGFDLDLTYVTDHVIAMSFPSS-------NPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRT----GDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTVKLTFSD 572
                                   266       276  |      -|      296       306       316       326       336       346       356       366       376       386       396  |    406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566      
                                                279     287                                                                                                             399  404

Chain B from PDB  Type:PROTEIN  Length:307
 aligned with Q4W8A1_CIOIN | Q4W8A1 from UniProtKB/TrEMBL  Length:576

    Alignment length:319
                                   263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563         
         Q4W8A1_CIOIN   254 RYRKDGFDLDLTYVTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTVKLTFSD 572
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.eee....eeee.....-------.hhhhhhhhhhhhh...eeeeeee.....hhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh-----hhhhhh.hhhhhhhhhhhhhhhhhh..........eeeeeeee............eeeeeee..eeeeeee......eeeeee....eeeeee........eeeeeeee.......hhhhh.eeeeee.hhh...eeeee.hhh....hhhhh.......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3awe B 254 RYRKDGFDLDLTYVTDHVIAMSFPSS-------NPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRT-----DVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTVKLTFSD 572
                                   263       273     |   -   |   293       303       313       323       333       343       353       363       373       383       393     |   - |     413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563         
                                                   279     287                                                                                                             399   405

Chain C from PDB  Type:PROTEIN  Length:308
 aligned with Q4W8A1_CIOIN | Q4W8A1 from UniProtKB/TrEMBL  Length:576

    Alignment length:320
                                   262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572
         Q4W8A1_CIOIN   253 RRYRKDGFDLDLTYVTDHVIAMSFPSSGRQSLFRNPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTVKLTFSD 572
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee....eeee.....-------.hhhhhhhhhhhhh...eeeeeee.....hhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh-----hhhhhh.hhhhhhhhhhhhhhhhhh..........eeeeeeee............eeeeeee..eeeeeee......eeeeee....eeeeee........eeeeeeee.......hhhhh.eeeeee.......eeeee.hhh....hhhhh.......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3awe C 253 RRYRKDGFDLDLTYVTDHVIAMSFPSS-------NPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNHVYRVMIDDHNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRT-----DVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTVKLTFSD 572
                                   262       272      |  -    |  292       302       312       322       332       342       352       362       372       382       392      |  -  |    412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572
                                                    279     287                                                                                                             399   405

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3AWE)

(no "CATH Domain" information available for 3AWE)

(no "Pfam Domain" information available for 3AWE)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (Q4W8A1_CIOIN | Q4W8A1)

molecular function
	GO:0005216	ion channel activity	Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
	GO:0016791	phosphatase activity	Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
	GO:0004725	protein tyrosine phosphatase activity	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
	GO:0005244	voltage-gated ion channel activity	Enables the transmembrane transfer of an ion by a voltage-gated channel. An ion is an atom or group of atoms carrying an electric charge by virtue of having gained or lost one or more electrons. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
biological process
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
	GO:0034220	ion transmembrane transport	A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
	GO:0006811	ion transport	The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0035335	peptidyl-tyrosine dephosphorylation	The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
	GO:0006470	protein dephosphorylation	The process of removing one or more phosphoric residues from a protein.
	GO:0034765	regulation of ion transmembrane transport	Any process that modulates the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other.
	GO:0055085	transmembrane transport	The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3awe)

Biological Units
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	3.1.3.-
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	Q4W8A1_CIOIN \| Q4W8A1	:	3awf 3awg 3v0d 3v0e 3v0f 3v0g 3v0h 3v0i 3v0j 4g7y

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 9)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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