3ZS1 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   HUMAN MYELOPEROXIDASE INACTIVATED BY TX5

Authors :   A. K. Tiden, T. Sjogren, M. Svensson, A. Bernlind, R. Senthilmohan, F. A H. Norman, P. O. Markgren, S. Gustavsson, S. Schmidt, S. Lundquist, L. N. J. Magon, G. N. Jameson, H. Eriksson, A. J. Kettle

Date :   21 Jun 11 (Deposition) - 31 Aug 11 (Release) - 28 Jun 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: B,D  (1x)
Biol. Unit 2: A,C  (1x)

Keywords :   Oxidoreductase, Enzyme Inactivation, Inflammation, Neutrophil, Reactive Oxygen Species (Ros), Hypochlorous Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. K. Tiden, T. Sjogren, M. Svensson, A. Bernlind, R. Senthilmohan, F. Auchere, H. Norman, P. O. Markgren, S. Gustavsson, S. Schmidt, S. Lundquist, L. V. Forbes, N. J. Magon, L. N. Paton, G. N. Jameson, H. Eriksson, A. J. Kettle
2-Thioxanthines Are Mechanism-Based Inactivators Of Myeloperoxidase That Block Oxidative Stress During Inflammation.
J. Biol. Chem. V. 286 37578 2011
PubMed-ID: 21880720 | Reference-DOI: 10.1074/JBC.M111.266981

Molecule 1 - MYELOPEROXIDASE LIGHT CHAIN
	Atcc	:	CCL240
	Cell Line	:	HL-60
	Chains	:	A, B
	EC Number	:	1.11.2.2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 2 - MYELOPEROXIDASE HEAVY CHAIN
	Atcc	:	CCL240
	Cell Line	:	HL-60
	Chains	:	C, D
	EC Number	:	1.11.2.2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:		B		D
Biological Unit 2 (1x)	:	A		C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (10, 30)

No.	Name	Count	Type	Full Name
1	ACT	6	Ligand/Ion	ACETATE ION
2	BMA	2	Ligand/Ion	BETA-D-MANNOSE
3	CA	2	Ligand/Ion	CALCIUM ION
4	CL	2	Ligand/Ion	CHLORIDE ION
5	CSO	2	Mod. Amino Acid	S-HYDROXYCYSTEINE
6	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
7	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
8	NAG	8	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
9	PVW	2	Ligand/Ion	3-(2-METHOXYETHYL)-2-THIOXO-1,2,3,7-TETRAHYDRO-6H-PURIN-6-ONE
10	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (7, 12)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	BMA	1	Ligand/Ion	BETA-D-MANNOSE
3	CA	-1	Ligand/Ion	CALCIUM ION
4	CL	-1	Ligand/Ion	CHLORIDE ION
5	CSO	1	Mod. Amino Acid	S-HYDROXYCYSTEINE
6	FUC	-1	Ligand/Ion	ALPHA-L-FUCOSE
7	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
8	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
9	PVW	1	Ligand/Ion	3-(2-METHOXYETHYL)-2-THIOXO-1,2,3,7-TETRAHYDRO-6H-PURIN-6-ONE
10	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (8, 14)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	BMA	1	Ligand/Ion	BETA-D-MANNOSE
3	CA	-1	Ligand/Ion	CALCIUM ION
4	CL	-1	Ligand/Ion	CHLORIDE ION
5	CSO	1	Mod. Amino Acid	S-HYDROXYCYSTEINE
6	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
7	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
8	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
9	PVW	1	Ligand/Ion	3-(2-METHOXYETHYL)-2-THIOXO-1,2,3,7-TETRAHYDRO-6H-PURIN-6-ONE
10	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (23, 23)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	MET A:87 , GLY A:90 , GLN A:91 , ASP A:94 , ASP A:98 , PHE A:99 , THR A:100 , PVW A:606 , HOH A:2040 , GLU C:242 , MET C:243 , THR C:329 , PHE C:332 , ARG C:333 , GLY C:335 , HIS C:336 , ILE C:339 , PHE C:365 , LEU C:417 , LEU C:420 , ARG C:424	BINDING SITE FOR RESIDUE HEM A 605
02	AC2	SOFTWARE	GLU A:102 , HEM A:605 , HOH A:2041 , ARG C:239 , GLU C:242 , PHE C:407 , HOH C:2043	BINDING SITE FOR RESIDUE PVW A 606
03	AC3	SOFTWARE	MET B:87 , GLY B:90 , GLN B:91 , ASP B:94 , ASP B:98 , PHE B:99 , THR B:100 , PVW B:606 , HOH B:2038 , HOH B:2042 , HOH B:2043 , GLU D:242 , MET D:243 , TYR D:296 , THR D:329 , PHE D:332 , ARG D:333 , GLY D:335 , HIS D:336 , ILE D:339 , PHE D:407 , LEU D:417 , ARG D:424	BINDING SITE FOR RESIDUE HEM B 605
04	AC4	SOFTWARE	HEM B:605 , ARG D:239 , GLU D:242 , PHE D:407	BINDING SITE FOR RESIDUE PVW B 606
05	AC5	SOFTWARE	THR C:304 , LYS C:486 , ARG C:487 , HOH C:2051	BINDING SITE FOR RESIDUE SO4 C 1579
06	AC6	SOFTWARE	ASP A:96 , THR C:168 , PHE C:170 , ASP C:172 , SER C:174	BINDING SITE FOR RESIDUE CA C 1580
07	AC7	SOFTWARE	TRP A:32 , ASN C:326 , VAL C:327 , TRP C:436	BINDING SITE FOR RESIDUE CL C 1581
08	AC8	SOFTWARE	ARG C:229 , THR C:447 , GLY C:449 , GLN C:450	BINDING SITE FOR RESIDUE SO4 C 1582
09	AC9	SOFTWARE	ARG C:525	BINDING SITE FOR RESIDUE ACT C 1583
10	BC1	SOFTWARE	PRO C:124 , ARG C:148 , ARG C:161	BINDING SITE FOR RESIDUE ACT C 1584
11	BC2	SOFTWARE	PRO C:303 , ARG C:307 , ARG C:487	BINDING SITE FOR RESIDUE ACT C 1585
12	BC3	SOFTWARE	THR D:304 , LYS D:486 , ARG D:487	BINDING SITE FOR RESIDUE SO4 D 1579
13	BC4	SOFTWARE	ASP B:96 , THR D:168 , PHE D:170 , ASP D:172 , SER D:174	BINDING SITE FOR RESIDUE CA D 1580
14	BC5	SOFTWARE	ARG B:31 , TRP B:32 , VAL D:327 , TRP D:436	BINDING SITE FOR RESIDUE CL D 1581
15	BC6	SOFTWARE	PRO D:124 , ARG D:148 , ARG D:161	BINDING SITE FOR RESIDUE ACT D 1582
16	BC7	SOFTWARE	MET D:522 , ARG D:525	BINDING SITE FOR RESIDUE ACT D 1583
17	BC8	SOFTWARE	PRO D:303 , ARG D:307 , ARG D:487	BINDING SITE FOR RESIDUE ACT D 1584
18	BC9	SOFTWARE	ASN C:189 , ASN C:192 , ALA C:198 , VAL C:199 , GLN C:201 , HOH C:2023 , HOH C:2094	BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 189 RESIDUES 1620 TO 1620
19	CC1	SOFTWARE	ASN C:225 , HOH C:2037 , HOH C:2095	BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 225 RESIDUES 1630 TO 1630
20	CC2	SOFTWARE	LEU B:33 , ASN C:317 , SER C:319 , VAL C:320 , HOH C:2096 , HOH C:2097 , HOH C:2098 , HOH C:2099 , TYR D:309 , ARG D:438 , PHE D:439 , GLY D:441	BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 317 RESIDUES 1640 TO 1645
21	CC3	SOFTWARE	ASN D:189 , ASN D:192 , ALA D:198 , VAL D:199 , GLN D:201	BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 189 RESIDUES 2620 TO 2620
22	CC4	SOFTWARE	ASN D:225 , TRP D:369 , LEU D:373	BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 225 RESIDUES 2630 TO 2630
23	CC5	SOFTWARE	LEU A:33 , TYR C:309 , PHE C:439 , GLY C:441 , HOH C:2075 , ARG D:314 , ASN D:317 , SER D:319 , VAL D:320	BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 317 RESIDUES 2640 TO 2642

Asymmetric Unit

No.	Residues
1	A:1	-	A:14
2	B:1	-	B:14
3	C:115	-	C:125
4	C:119	-	C:143
5	C:153	-	D:153
6	C:221	-	C:232
7	C:440	-	C:497
8	C:538	-	C:564
9	D:115	-	D:125
10	D:119	-	D:143
11	D:221	-	D:232
12	D:440	-	D:497
13	D:538	-	D:564

Asymmetric Unit

No.	Residues
1	Pro C:123	-	Pro C:124
2	Glu C:354	-	Pro C:355
3	Asn C:549	-	Asn C:550
4	Tyr C:557	-	Pro C:558
5	Pro D:123	-	Pro D:124
6	Glu D:354	-	Pro D:355
7	Asn D:549	-	Asn D:550
8	Tyr D:557	-	Pro D:558

Asymmetric Unit (8, 16)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_015377	Y	173	C	PERM_HUMAN	Disease (MPOD)	78950939	A/B	Y	7	C
2	UniProt	VAR_015378	M	251	T	PERM_HUMAN	Disease (MPOD)	56378716	A/B	M	85	T
3	UniProt	VAR_036517	R	447	Q	PERM_HUMAN	Unclassified	762688992	C/D	R	281	Q
4	CancerSNP	VAR_PERM_HUMAN_CCDS11604_1_01 *	R	447	Q	PERM_HUMAN	Disease (Colorectal cancer)	---	C/D	R	281	Q
5	UniProt	VAR_015379	R	569	W	PERM_HUMAN	Disease (MPOD)	119468010	C/D	R	403	W
6	UniProt	VAR_023996	R	604	C	PERM_HUMAN	Polymorphism	35670089	C/D	R	438	C
7	UniProt	VAR_023997	E	683	Q	PERM_HUMAN	Polymorphism	35702888	C/D	E	517	Q
8	UniProt	VAR_012066	I	717	V	PERM_HUMAN	Polymorphism	2759	C/D	I	551	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (8, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_015377	Y	173	C	PERM_HUMAN	Disease (MPOD)	78950939	B	Y	7	C
2	UniProt	VAR_015378	M	251	T	PERM_HUMAN	Disease (MPOD)	56378716	B	M	85	T
3	UniProt	VAR_036517	R	447	Q	PERM_HUMAN	Unclassified	762688992	D	R	281	Q
4	CancerSNP	VAR_PERM_HUMAN_CCDS11604_1_01 *	R	447	Q	PERM_HUMAN	Disease (Colorectal cancer)	---	D	R	281	Q
5	UniProt	VAR_015379	R	569	W	PERM_HUMAN	Disease (MPOD)	119468010	D	R	403	W
6	UniProt	VAR_023996	R	604	C	PERM_HUMAN	Polymorphism	35670089	D	R	438	C
7	UniProt	VAR_023997	E	683	Q	PERM_HUMAN	Polymorphism	35702888	D	E	517	Q
8	UniProt	VAR_012066	I	717	V	PERM_HUMAN	Polymorphism	2759	D	I	551	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (8, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_015377	Y	173	C	PERM_HUMAN	Disease (MPOD)	78950939	A	Y	7	C
2	UniProt	VAR_015378	M	251	T	PERM_HUMAN	Disease (MPOD)	56378716	A	M	85	T
3	UniProt	VAR_036517	R	447	Q	PERM_HUMAN	Unclassified	762688992	C	R	281	Q
4	CancerSNP	VAR_PERM_HUMAN_CCDS11604_1_01 *	R	447	Q	PERM_HUMAN	Disease (Colorectal cancer)	---	C	R	281	Q
5	UniProt	VAR_015379	R	569	W	PERM_HUMAN	Disease (MPOD)	119468010	C	R	403	W
6	UniProt	VAR_023996	R	604	C	PERM_HUMAN	Polymorphism	35670089	C	R	438	C
7	UniProt	VAR_023997	E	683	Q	PERM_HUMAN	Polymorphism	35702888	C	E	517	Q
8	UniProt	VAR_012066	I	717	V	PERM_HUMAN	Polymorphism	2759	C	I	551	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PEROXIDASE_1	PS00435	Peroxidases proximal heme-ligand signature.	PERM_HUMAN	408-418	2	C:242-252 D:242-252

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PEROXIDASE_1	PS00435	Peroxidases proximal heme-ligand signature.	PERM_HUMAN	408-418	1	- D:242-252

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PEROXIDASE_1	PS00435	Peroxidases proximal heme-ligand signature.	PERM_HUMAN	408-418	1	C:242-252 -

Asymmetric Unit (9, 20)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000225275	1	ENSE00001151667	chr17:56358296-56357966	331	PERM_HUMAN	1-52	52	0	-	-
1.2	ENST00000225275	2	ENSE00000739393	chr17:56357820-56357727	94	PERM_HUMAN	52-83	32	0	-	-
1.3	ENST00000225275	3	ENSE00000739378	chr17:56357375-56357200	176	PERM_HUMAN	83-142	60	0	-	-
1.4a	ENST00000225275	4a	ENSE00000739375	chr17:56357007-56356884	124	PERM_HUMAN	142-183	42	2	A:1-17 B:1-17 - -	17 17 - -
1.4c	ENST00000225275	4c	ENSE00000739356	chr17:56356787-56356658	130	PERM_HUMAN	183-226	44	2	A:17-60 B:17-60 - -	44 44 - -
1.5	ENST00000225275	5	ENSE00000480273	chr17:56356575-56356369	207	PERM_HUMAN	227-295	69	4	A:61-104 B:61-104 C:113-129 D:113-129	44 44 17 17
1.6	ENST00000225275	6	ENSE00000480274	chr17:56355506-56355188	319	PERM_HUMAN	296-402	107	2	- - C:130-236 D:130-236	- - 107 107
1.7	ENST00000225275	7	ENSE00000739352	chr17:56353063-56352903	161	PERM_HUMAN	402-455	54	2	- - C:236-289 D:236-289	- - 54 54
1.9	ENST00000225275	9	ENSE00000480276	chr17:56351030-56350775	256	PERM_HUMAN	456-541	86	2	- - C:290-375 D:290-375	- - 86 86
1.10	ENST00000225275	10	ENSE00001743415	chr17:56350279-56350109	171	PERM_HUMAN	541-598	58	2	- - C:375-432 D:375-432	- - 58 58
1.11	ENST00000225275	11	ENSE00000739347	chr17:56349253-56349016	238	PERM_HUMAN	598-677	80	2	- - C:432-511 D:432-511	- - 80 80
1.12	ENST00000225275	12	ENSE00001151664	chr17:56348224-56347217	1008	PERM_HUMAN	677-745	69	2	- - C:511-578 D:511-578	- - 68 68

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:104
 aligned with PERM_HUMAN | P05164 from UniProtKB/Swiss-Prot  Length:745

    Alignment length:104
                                   176       186       196       206       216       226       236       246       256       266    
           PERM_HUMAN   167 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 270
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................ee...............................hhhhhhhhhh..hhhhh.eeeeeehhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------C-----------------------------------------------------------------------------T------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4a        -------------------------------------------Exon 1.5  PDB: A:61-104 UniProt: 227-295     Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.4c  PDB: A:17-60 UniProt: 183-226    -------------------------------------------- Transcript 1 (2)
                 3zs1 A   1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 104
                                    10        20        30        40        50        60        70        80        90       100

Chain B from PDB  Type:PROTEIN  Length:104
 aligned with PERM_HUMAN | P05164 from UniProtKB/Swiss-Prot  Length:745

    Alignment length:104
                                   176       186       196       206       216       226       236       246       256       266    
           PERM_HUMAN   167 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 270
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................ee...............................hhhhhhhhhh..hhhhh.eeeeeehhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------C-----------------------------------------------------------------------------T------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4a        -------------------------------------------Exon 1.5  PDB: B:61-104 UniProt: 227-295     Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.4c  PDB: B:17-60 UniProt: 183-226    -------------------------------------------- Transcript 1 (2)
                 3zs1 B   1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 104
                                    10        20        30        40        50        60        70        80        90       100

Chain C from PDB  Type:PROTEIN  Length:466
 aligned with PERM_HUMAN | P05164 from UniProtKB/Swiss-Prot  Length:745

    Alignment length:466
                                   288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738      
           PERM_HUMAN   279 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWREA 744
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............ee.............ee...................ee.......hhhhhh.hhhhhhhh...............................hhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh..eee.............eee.hhh...hhhhhhh..hhhhhhhhhhheee........hhhhhh...........hhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh........hhhhhhhhhhhhhhhhhh...........hhhhhhhhh..hhhhhhhhhh...eee.............eee.hhh....hhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q-------------------------------------------------------------------------------------------------------------------------W----------------------------------C------------------------------------------------------------------------------Q---------------------------------V--------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------PEROXIDASE_-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5         Exon 1.6  PDB: C:130-236 UniProt: 296-402                                                                  ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.10  PDB: C:375-432 UniProt: 541-598                ------------------------------------------------------------------------------Exon 1.12  PDB: C:511-578 UniProt: 677-745 [INCOMPLETE]              Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: C:236-289 UniProt: 402-455             Exon 1.9  PDB: C:290-375 UniProt: 456-541                                             --------------------------------------------------------Exon 1.11  PDB: C:432-511 UniProt: 598-677                                      ------------------------------------------------------------------- Transcript 1 (2)
                 3zs1 C 113 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRScPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWREA 578
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572      
                                                               150-CSO

Chain D from PDB  Type:PROTEIN  Length:466
 aligned with PERM_HUMAN | P05164 from UniProtKB/Swiss-Prot  Length:745

    Alignment length:466
                                   288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738      
           PERM_HUMAN   279 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWREA 744
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................................................ee.......hhhhhh.hhhhhhhh................................hhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh..eee.............eee.hhh..hhhhhhhh..hhhhhhhhhh.eee........hhhhhh...........hhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh...........hhhhhhhhh..hhhhhhhhhh...eee.............eee.hhh....hhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q-------------------------------------------------------------------------------------------------------------------------W----------------------------------C------------------------------------------------------------------------------Q---------------------------------V--------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------PEROXIDASE_-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5         Exon 1.6  PDB: D:130-236 UniProt: 296-402                                                                  ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.10  PDB: D:375-432 UniProt: 541-598                ------------------------------------------------------------------------------Exon 1.12  PDB: D:511-578 UniProt: 677-745 [INCOMPLETE]              Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: D:236-289 UniProt: 402-455             Exon 1.9  PDB: D:290-375 UniProt: 456-541                                             --------------------------------------------------------Exon 1.11  PDB: D:432-511 UniProt: 598-677                                      ------------------------------------------------------------------- Transcript 1 (2)
                 3zs1 D 113 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRScPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWREA 578
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572      
                                                               150-CSO

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3ZS1)

(no "CATH Domain" information available for 3ZS1)

(no "Pfam Domain" information available for 3ZS1)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (PERM_HUMAN | P05164)

molecular function
	GO:0003682	chromatin binding	Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0008201	heparin binding	Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0004601	peroxidase activity	Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
biological process
	GO:0007568	aging	A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
	GO:0006952	defense response	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0050832	defense response to fungus	Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
	GO:0042744	hydrogen peroxide catabolic process	The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2).
	GO:0002149	hypochlorous acid biosynthetic process	The chemical reactions and pathways resulting in the formation of hypochlorous acid.
	GO:0034374	low-density lipoprotein particle remodeling	The acquisition, loss or modification of a protein or lipid within a low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters from LDL to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride to LDL.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:0044130	negative regulation of growth of symbiont in host	Any process in which the symbiont stops, prevents or reduces its increase in size or mass within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0019430	removal of superoxide radicals	Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2).
	GO:0002679	respiratory burst involved in defense response	A phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
	GO:0032094	response to food	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a food stimulus; food is anything which, when taken into the body, serves to nourish or build up the tissues or to supply body heat.
	GO:1990268	response to gold nanoparticle	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gold nanoparticle stimulus.
	GO:0032496	response to lipopolysaccharide	Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
	GO:0009612	response to mechanical stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
	GO:0006979	response to oxidative stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
	GO:0001878	response to yeast	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a yeast species.
cellular component
	GO:0042582	azurophil granule	Primary lysosomal granule found in neutrophil granulocytes. Contains a wide range of hydrolytic enzymes and is released into the extracellular fluid.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005764	lysosome	A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0030141	secretory granule	A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules.

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	Cis Peptide Bonds
		Asn C:549 - Asn C:550	[ RasMol ]
		Asn D:549 - Asn D:550	[ RasMol ]
		Glu C:354 - Pro C:355	[ RasMol ]
		Glu D:354 - Pro D:355	[ RasMol ]
		Pro C:123 - Pro C:124	[ RasMol ]
		Pro D:123 - Pro D:124	[ RasMol ]
		Tyr C:557 - Pro C:558	[ RasMol ]
		Tyr D:557 - Pro D:558	[ RasMol ]

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Access by PDB/NDB ID
	3zs1
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	PERM_HUMAN \| P05164
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	1.11.2.2
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	254600
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	PERM_HUMAN \| P05164
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1cxp	CRYOGENIC CRYSTAL STRUCTURE OF HUMAN MYELOPEROXIDASE ISOFORM C
1d2v	CRYSTAL STRUCTURE OF BROMIDE-BOUND HUMAN MYELOPEROXIDASE ISOFORM C AT PH 5.5
1d5l	CRYSTAL STRUCTURE OF CYANIDE-BOUND HUMAN MYELOPEROXIDASEISOFORM C AT PH 5.5
1d7w	CRYSTAL STRUCTURE OF HUMAN MYELOPEROXIDASE ISOFORM CCOMPLEXED WITH CYANIDE AND BROMIDE AT PH 4.0
1dnu	STRUCTURAL ANALYSES OF HUMAN MYELOPEROXIDASE- THIOCYANATECOMPLEX
1dnw	HUMAN MYELOPEROXIDASE-CYANIDE-THIOCYANATE COMPLEX
1mhl	CRYSTAL STRUCTURE OF HUMAN MYELOPEROXIDASE ISOFORM C CRYSTALLIZED IN SPACE GROUP P2(1) AT PH 5.5 AND 20 DEG C
1myp	MYELOPEROXIDASE
3zs0	HUMAN MYELOPEROXIDASE INACTIVATED BY TX2

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (10, 30)

Sites (23, 23)

SS Bonds (13, 13)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (8, 16)

PROSITE Motifs (1, 2)

Exons (9, 20)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (30, 30)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File