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(-) Description

Title :  CRYSTAL STRUCTURE OF HELICOBACTER PYLORI T4SS PROTEIN CAGL IN A TETRAGONAL CRYSTAL FORM WITH A HELICAL RGD-MOTIF (6 MOL PER ASU)
 
Authors :  S. Barden, H. H. Niemann
Date :  20 Nov 12  (Deposition) - 09 Oct 13  (Release) - 27 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.25
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Protein Binding, Adhesion, Rgd Motif, Integrin Binding, Type Iv Secretion, T4S, Virulence, Cag18, Hp0539, Methylated (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Barden, S. Lange, N. Tegtmeyer, J. Conradi, N. Sewald, S. Backert, H. H. Niemann
A Helical Rgd Motif Promoting Cell Adhesion: Crystal Structures Of The Helicobacter Pylori Type Iv Secretion System Pilus Protein Cagl
Structure V. 21 1931 2013
PubMed-ID: 24076404  |  Reference-DOI: 10.1016/J.STR.2013.08.018

(-) Compounds

Molecule 1 - CAGL
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: CODONPLUS RIL
    Expression System Vector: PETM11
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 21-237
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 85962
    Other Details: PRIMARY AMINES (N-TERMINUS AND LYSINES) REDUCTIVELY METHYLATED
    Strain: 26695

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 119)

Asymmetric Unit (5, 119)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL
2K1Ligand/IonPOTASSIUM ION
3MLY107Mod. Amino AcidN-DIMETHYL-LYSINE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 21)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2K-1Ligand/IonPOTASSIUM ION
3MLY18Mod. Amino AcidN-DIMETHYL-LYSINE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 2 (3, 21)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2K-1Ligand/IonPOTASSIUM ION
3MLY18Mod. Amino AcidN-DIMETHYL-LYSINE
4PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
5PO41Ligand/IonPHOSPHATE ION
Biological Unit 3 (2, 19)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2K-1Ligand/IonPOTASSIUM ION
3MLY18Mod. Amino AcidN-DIMETHYL-LYSINE
4PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
5PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 4 (2, 19)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2K-1Ligand/IonPOTASSIUM ION
3MLY18Mod. Amino AcidN-DIMETHYL-LYSINE
4PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
5PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 5 (2, 19)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2K-1Ligand/IonPOTASSIUM ION
3MLY18Mod. Amino AcidN-DIMETHYL-LYSINE
4PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
5PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 6 (3, 19)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2K-1Ligand/IonPOTASSIUM ION
3MLY17Mod. Amino AcidN-DIMETHYL-LYSINE
4PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
5PO41Ligand/IonPHOSPHATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR D:37 , GLN D:40 , ASN D:186BINDING SITE FOR RESIDUE GOL D1228
02AC2SOFTWAREGLN F:40 , ASN F:44 , ASN F:186BINDING SITE FOR RESIDUE GOL F1225
03AC3SOFTWAREMLY A:28 , ASP A:97BINDING SITE FOR RESIDUE PEG A1232
04AC4SOFTWAREASP B:97BINDING SITE FOR RESIDUE GOL B1230
05AC5SOFTWARELEU C:27 , ASP C:97BINDING SITE FOR RESIDUE GOL C1227
06AC6SOFTWAREASP E:97BINDING SITE FOR RESIDUE GOL E1231
07AC7SOFTWAREGLN B:40 , VAL B:41 , ASN B:44 , GLU B:182 , ASN B:186BINDING SITE FOR RESIDUE GOL B1231
08AC8SOFTWAREGLN A:40 , VAL A:41 , ASN A:44 , GLU A:182 , ASN A:186 , GOL A:1234BINDING SITE FOR RESIDUE GOL A1233
09AC9SOFTWAREASP D:97BINDING SITE FOR RESIDUE K D1229
10BC1SOFTWAREASN A:44 , LEU A:173 , GLU A:182 , ASN A:186 , GOL A:1233BINDING SITE FOR RESIDUE GOL A1234
11BC2SOFTWARETHR B:175 , SER B:177 , GLN B:178BINDING SITE FOR RESIDUE PO4 B1232
12BC3SOFTWARETHR F:175 , ALA F:176 , GLN F:178BINDING SITE FOR RESIDUE PO4 F1226

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:128 -A:139
2B:128 -B:139
3D:128 -D:139
4E:128 -E:139

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3ZCJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZCJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZCJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZCJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:205
 aligned with O25272_HELPY | O25272 from UniProtKB/TrEMBL  Length:237

    Alignment length:211
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230 
         O25272_HELPY    21 EDITSGLKQLDSTYQETNQQVLKNLDEIFSTTSPSANNEMGEEDALNIKKAAIALRGDLALLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQNTAEQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSLKAYQSNIGGTASLITASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEELDALERSLEQSKRQYLQERQS 231
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zcj A  21 EDITSGLkQLDSTYQETNQQVLkNLDEIFST------NEMGEEDALNIkkAAIALRGDLALLkANFEANELFFISEDVIFkTYMSSPELLLTYMkINPLDQNTAEQQCGISDkVLVLYCEGkLkIEQEkQNIRERLETSLkAYQSNIGGTASLITASQTLVESLkNkNFIkGIRkLMLAHNkVFLNYLEELDALERSLEQSkRQYLQERQS 231
                                   |30        40  |     50|      |60        70        80  |     90       100|      110    |  120       130  |    140 | |   150       160|      170       180    | |190|   |  200 |     210       220 |     230 
                                  28-MLY         43-MLY  51     58         69-MLY        83-MLY           101-MLY       115-MLY           133-MLY  142-MLY  |         161-MLY                 185-MLY |   |      |                 222-MLY     
                                                                            70-MLY                                                                   144-MLY|                                   187-MLY   |      |                             
                                                                                                                                                          149-MLY                                   191-MLY      |                             
                                                                                                                                                                                                        195-MLY  |                             
                                                                                                                                                                                                               202-MLY                         


Chain B from PDB  Type:PROTEIN  Length:199
 aligned with O25272_HELPY | O25272 from UniProtKB/TrEMBL  Length:237

    Alignment length:207
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       
         O25272_HELPY    23 ITSGLKQLDSTYQETNQQVLKNLDEIFSTTSPSANNEMGEEDALNIKKAAIALRGDLALLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQNTAEQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSLKAYQSNIGGTASLITASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEELDALERSLEQSKRQYLQER 229
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-----.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh......---.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zcj B  23 ITSGLkQLDSTYQETNQQVLkNLDEIFSTT-----NEMGEEDALNIkkAAIALRGDLALLkANFEANELFFISEDVIFkTYMSSPELLLTYMkINPLDQNT---QCGISDkVLVLYCEGkLkIEQEkQNIRERLETSLkAYQSNIGGTASLITASQTLVESLkNkNFIkGIRkLMLAHNkVFLNYLEELDALERSLEQSkRQYLQER 229
                                 |  32        42|       52     |  62      ||72        82|       92       102       112  |    122|   |  132|      142 |    |152       162       172       182  | |  192  |    202       212       222       
                                28-MLY         43-MLY   52    58         69-MLY        83-MLY           101-MLY       115-MLY 123 127     |      142-MLY  |         161-MLY                 185-MLY |   |      |                 222-MLY   
                                                                          70-MLY                                                        133-MLY    144-MLY|                                   187-MLY   |      |                           
                                                                                                                                                        149-MLY                                   191-MLY      |                           
                                                                                                                                                                                                      195-MLY  |                           
                                                                                                                                                                                                             202-MLY                       


Chain C from PDB  Type:PROTEIN  Length:185
 aligned with O25272_HELPY | O25272 from UniProtKB/TrEMBL  Length:237

    Alignment length:204
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    
         O25272_HELPY    23 ITSGLKQLDSTYQETNQQVLKNLDEIFSTTSPSANNEMGEEDALNIKKAAIALRGDLALLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQNTAEQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSLKAYQSNIGGTASLITASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEELDALERSLEQSKRQYL 226
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh----------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...---------....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zcj C  23 ITSGLkQLDSTYQETNQQVLkNLDEIF----------MGEEDALNIkkAAIALRGDLALLkANFEANELFFISEDVIFkTYMSSPELLLTYMkINPLD---------ISDkVLVLYCEGkLkIEQEkQNIRERLETSLkAYQSNIGGTASLITASQTLVESLkNkNFIkGIRkLMLAHNkVFLNYLEELDALERSLEQSkRQYL 226
                                 |  32        42|     |  -       |62      ||72        82|       92       102       112  |    | -       132|      142 |    |152       162       172       182  | |  192  |    202       212       222    
                                28-MLY         43-MLY49         60       69-MLY        83-MLY           101-MLY       115-MLY0       130  |      142-MLY  |         161-MLY                 185-MLY |   |      |                 222-MLY
                                                                          70-MLY                                                        133-MLY    144-MLY|                                   187-MLY   |      |                        
                                                                                                                                                        149-MLY                                   191-MLY      |                        
                                                                                                                                                                                                      195-MLY  |                        
                                                                                                                                                                                                             202-MLY                    


Chain D from PDB  Type:PROTEIN  Length:194
 aligned with O25272_HELPY | O25272 from UniProtKB/TrEMBL  Length:237

    Alignment length:205
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222     
         O25272_HELPY    23 ITSGLKQLDSTYQETNQQVLKNLDEIFSTTSPSANNEMGEEDALNIKKAAIALRGDLALLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQNTAEQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSLKAYQSNIGGTASLITASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEELDALERSLEQSKRQYLQ 227
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh-----------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zcj D  23 ITSGLkQLDSTYQETNQQVLkNLDEI-----------MGEEDALNIkkAAIALRGDLALLkANFEANELFFISEDVIFkTYMSSPELLLTYMkINPLDQNTAEQQCGISDkVLVLYCEGkLkIEQEkQNIRERLETSLkAYQSNIGGTASLITASQTLVESLkNkNFIkGIRkLMLAHNkVFLNYLEELDALERSLEQSkRQYLQ 227
                                 |  32        42|    |   -       |62      ||72        82|       92       102       112  |    122       132|      142 |    |152       162       172       182  | |  192  |    202       212       222     
                                28-MLY         43-MLY8          60       69-MLY        83-MLY           101-MLY       115-MLY           133-MLY  142-MLY  |         161-MLY                 185-MLY |   |      |                 222-MLY 
                                                                          70-MLY                                                                   144-MLY|                                   187-MLY   |      |                         
                                                                                                                                                        149-MLY                                   191-MLY      |                         
                                                                                                                                                                                                      195-MLY  |                         
                                                                                                                                                                                                             202-MLY                     


Chain E from PDB  Type:PROTEIN  Length:193
 aligned with O25272_HELPY | O25272 from UniProtKB/TrEMBL  Length:237

    Alignment length:209
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221         
         O25272_HELPY    22 DITSGLKQLDSTYQETNQQVLKNLDEIFSTTSPSANNEMGEEDALNIKKAAIALRGDLALLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQNTAEQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSLKAYQSNIGGTASLITASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEELDALERSLEQSKRQYLQERQ 230
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh----------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zcj E  22 DITSGLkQLDSTYQETNQQVLkNLDEI----------------ALNIkkAAIALRGDLALLkANFEANELFFISEDVIFkTYMSSPELLLTYMkINPLDQNTAEQQCGISDkVLVLYCEGkLkIEQEkQNIRERLETSLkAYQSNIGGTASLITASQTLVESLkNkNFIkGIRkLMLAHNkVFLNYLEELDALERSLEQSkRQYLQERQ 230
                                  | 31        41 |    |  -         -   |   |71        81 |      91       101       111   |   121       131 |     141| |    151       161       171       181   | | 191   |   201|      211       221|        
                                 28-MLY         43-MLY8               65   ||           83-MLY           101-MLY       115-MLY           133-MLY  142-MLY  |         161-MLY                 185-MLY |   |      |                 222-MLY    
                                                                          69-MLY                                                                    144-MLY|                                   187-MLY   |      |                            
                                                                           70-MLY                                                                        149-MLY                                   191-MLY      |                            
                                                                                                                                                                                                       195-MLY  |                            
                                                                                                                                                                                                              202-MLY                        


Chain F from PDB  Type:PROTEIN  Length:166
 aligned with O25272_HELPY | O25272 from UniProtKB/TrEMBL  Length:237

    Alignment length:200
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224
         O25272_HELPY    25 SGLKQLDSTYQETNQQVLKNLDEIFSTTSPSANNEMGEEDALNIKKAAIALRGDLALLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQNTAEQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSLKAYQSNIGGTASLITASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEELDALERSLEQSKRQ 224
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh----------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zcj F  25 SGLkQLDSTYQETNQQVLkNLDEI----------------ALNIkkAAIALRGDLALLkANFEANELFFISEDVIFkTYMSSPELLLTYMkINP------------------LYCEGkLkIEQEkQNIRERLETSLkAYQSNIGGTASLITASQTLVESLkNkNFIkGIRkLMLAHNkVFLNYLEELDALERSLEQSkRQ 224
                               |    34        44   |     -         -|   ||  74        84        94      |104       114|  |     -         -  |    144    |  154      |164       174       184| |   |194|      204       214       224
                              28-MLY         43-MLY8               65   ||           83-MLY           101-MLY       115-MLY               137    | |    |         161-MLY                 185-MLY |   |      |                 222-MLY
                                                                       69-MLY                                          118                     142-MLY  |                                   187-MLY   |      |                      
                                                                        70-MLY                                                                   144-MLY|                                       191-MLY      |                      
                                                                                                                                                      149-MLY                                       195-MLY  |                      
                                                                                                                                                                                                           202-MLY
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ZCJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZCJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZCJ)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3ZCJ)

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        O25272_HELPY | O25272: 3zci 4cii 4x5u

(-) Related Entries Specified in the PDB File

3zci CRYSTAL STRUCTURE OF HELICOBACTER PYLORI T4SS PROTEIN CAGL IN A CUBIC CRYSTAL FORM WITH A DISTORTED HELICAL CONFORMATION OF THE RGD-MOTIF