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3ZCJ
Asym. Unit
Info
Asym.Unit (429 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (75 KB)
Biol.Unit 3 (70 KB)
Biol.Unit 4 (73 KB)
Biol.Unit 5 (74 KB)
Biol.Unit 6 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HELICOBACTER PYLORI T4SS PROTEIN CAGL IN A TETRAGONAL CRYSTAL FORM WITH A HELICAL RGD-MOTIF (6 MOL PER ASU)
Authors
:
S. Barden, H. H. Niemann
Date
:
20 Nov 12 (Deposition) - 09 Oct 13 (Release) - 27 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.25
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Protein Binding, Adhesion, Rgd Motif, Integrin Binding, Type Iv Secretion, T4S, Virulence, Cag18, Hp0539, Methylated
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Barden, S. Lange, N. Tegtmeyer, J. Conradi, N. Sewald, S. Backert, H. H. Niemann
A Helical Rgd Motif Promoting Cell Adhesion: Crystal Structures Of The Helicobacter Pylori Type Iv Secretion System Pilus Protein Cagl
Structure V. 21 1931 2013
[
close entry info
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Hetero Components
(5, 119)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
2a: POTASSIUM ION (Ka)
3a: N-DIMETHYL-LYSINE (MLYa)
3aa: N-DIMETHYL-LYSINE (MLYaa)
3ab: N-DIMETHYL-LYSINE (MLYab)
3ac: N-DIMETHYL-LYSINE (MLYac)
3ad: N-DIMETHYL-LYSINE (MLYad)
3ae: N-DIMETHYL-LYSINE (MLYae)
3af: N-DIMETHYL-LYSINE (MLYaf)
3ag: N-DIMETHYL-LYSINE (MLYag)
3ah: N-DIMETHYL-LYSINE (MLYah)
3ai: N-DIMETHYL-LYSINE (MLYai)
3aj: N-DIMETHYL-LYSINE (MLYaj)
3ak: N-DIMETHYL-LYSINE (MLYak)
3al: N-DIMETHYL-LYSINE (MLYal)
3am: N-DIMETHYL-LYSINE (MLYam)
3an: N-DIMETHYL-LYSINE (MLYan)
3ao: N-DIMETHYL-LYSINE (MLYao)
3ap: N-DIMETHYL-LYSINE (MLYap)
3aq: N-DIMETHYL-LYSINE (MLYaq)
3ar: N-DIMETHYL-LYSINE (MLYar)
3as: N-DIMETHYL-LYSINE (MLYas)
3at: N-DIMETHYL-LYSINE (MLYat)
3au: N-DIMETHYL-LYSINE (MLYau)
3av: N-DIMETHYL-LYSINE (MLYav)
3aw: N-DIMETHYL-LYSINE (MLYaw)
3ax: N-DIMETHYL-LYSINE (MLYax)
3ay: N-DIMETHYL-LYSINE (MLYay)
3az: N-DIMETHYL-LYSINE (MLYaz)
3b: N-DIMETHYL-LYSINE (MLYb)
3ba: N-DIMETHYL-LYSINE (MLYba)
3bb: N-DIMETHYL-LYSINE (MLYbb)
3bc: N-DIMETHYL-LYSINE (MLYbc)
3bd: N-DIMETHYL-LYSINE (MLYbd)
3be: N-DIMETHYL-LYSINE (MLYbe)
3bf: N-DIMETHYL-LYSINE (MLYbf)
3bg: N-DIMETHYL-LYSINE (MLYbg)
3bh: N-DIMETHYL-LYSINE (MLYbh)
3bi: N-DIMETHYL-LYSINE (MLYbi)
3bj: N-DIMETHYL-LYSINE (MLYbj)
3bk: N-DIMETHYL-LYSINE (MLYbk)
3bl: N-DIMETHYL-LYSINE (MLYbl)
3bm: N-DIMETHYL-LYSINE (MLYbm)
3bn: N-DIMETHYL-LYSINE (MLYbn)
3bo: N-DIMETHYL-LYSINE (MLYbo)
3bp: N-DIMETHYL-LYSINE (MLYbp)
3bq: N-DIMETHYL-LYSINE (MLYbq)
3br: N-DIMETHYL-LYSINE (MLYbr)
3bs: N-DIMETHYL-LYSINE (MLYbs)
3bt: N-DIMETHYL-LYSINE (MLYbt)
3bu: N-DIMETHYL-LYSINE (MLYbu)
3bv: N-DIMETHYL-LYSINE (MLYbv)
3bw: N-DIMETHYL-LYSINE (MLYbw)
3bx: N-DIMETHYL-LYSINE (MLYbx)
3by: N-DIMETHYL-LYSINE (MLYby)
3bz: N-DIMETHYL-LYSINE (MLYbz)
3c: N-DIMETHYL-LYSINE (MLYc)
3ca: N-DIMETHYL-LYSINE (MLYca)
3cb: N-DIMETHYL-LYSINE (MLYcb)
3cc: N-DIMETHYL-LYSINE (MLYcc)
3cd: N-DIMETHYL-LYSINE (MLYcd)
3ce: N-DIMETHYL-LYSINE (MLYce)
3cf: N-DIMETHYL-LYSINE (MLYcf)
3cg: N-DIMETHYL-LYSINE (MLYcg)
3ch: N-DIMETHYL-LYSINE (MLYch)
3ci: N-DIMETHYL-LYSINE (MLYci)
3cj: N-DIMETHYL-LYSINE (MLYcj)
3ck: N-DIMETHYL-LYSINE (MLYck)
3cl: N-DIMETHYL-LYSINE (MLYcl)
3cm: N-DIMETHYL-LYSINE (MLYcm)
3cn: N-DIMETHYL-LYSINE (MLYcn)
3co: N-DIMETHYL-LYSINE (MLYco)
3cp: N-DIMETHYL-LYSINE (MLYcp)
3cq: N-DIMETHYL-LYSINE (MLYcq)
3cr: N-DIMETHYL-LYSINE (MLYcr)
3cs: N-DIMETHYL-LYSINE (MLYcs)
3ct: N-DIMETHYL-LYSINE (MLYct)
3cu: N-DIMETHYL-LYSINE (MLYcu)
3cv: N-DIMETHYL-LYSINE (MLYcv)
3cw: N-DIMETHYL-LYSINE (MLYcw)
3cx: N-DIMETHYL-LYSINE (MLYcx)
3cy: N-DIMETHYL-LYSINE (MLYcy)
3cz: N-DIMETHYL-LYSINE (MLYcz)
3d: N-DIMETHYL-LYSINE (MLYd)
3da: N-DIMETHYL-LYSINE (MLYda)
3db: N-DIMETHYL-LYSINE (MLYdb)
3dc: N-DIMETHYL-LYSINE (MLYdc)
3e: N-DIMETHYL-LYSINE (MLYe)
3f: N-DIMETHYL-LYSINE (MLYf)
3g: N-DIMETHYL-LYSINE (MLYg)
3h: N-DIMETHYL-LYSINE (MLYh)
3i: N-DIMETHYL-LYSINE (MLYi)
3j: N-DIMETHYL-LYSINE (MLYj)
3k: N-DIMETHYL-LYSINE (MLYk)
3l: N-DIMETHYL-LYSINE (MLYl)
3m: N-DIMETHYL-LYSINE (MLYm)
3n: N-DIMETHYL-LYSINE (MLYn)
3o: N-DIMETHYL-LYSINE (MLYo)
3p: N-DIMETHYL-LYSINE (MLYp)
3q: N-DIMETHYL-LYSINE (MLYq)
3r: N-DIMETHYL-LYSINE (MLYr)
3s: N-DIMETHYL-LYSINE (MLYs)
3t: N-DIMETHYL-LYSINE (MLYt)
3u: N-DIMETHYL-LYSINE (MLYu)
3v: N-DIMETHYL-LYSINE (MLYv)
3w: N-DIMETHYL-LYSINE (MLYw)
3x: N-DIMETHYL-LYSINE (MLYx)
3y: N-DIMETHYL-LYSINE (MLYy)
3z: N-DIMETHYL-LYSINE (MLYz)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
8
Ligand/Ion
GLYCEROL
2
K
1
Ligand/Ion
POTASSIUM ION
3
MLY
107
Mod. Amino Acid
N-DIMETHYL-LYSINE
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR D:37 , GLN D:40 , ASN D:186
BINDING SITE FOR RESIDUE GOL D1228
02
AC2
SOFTWARE
GLN F:40 , ASN F:44 , ASN F:186
BINDING SITE FOR RESIDUE GOL F1225
03
AC3
SOFTWARE
MLY A:28 , ASP A:97
BINDING SITE FOR RESIDUE PEG A1232
04
AC4
SOFTWARE
ASP B:97
BINDING SITE FOR RESIDUE GOL B1230
05
AC5
SOFTWARE
LEU C:27 , ASP C:97
BINDING SITE FOR RESIDUE GOL C1227
06
AC6
SOFTWARE
ASP E:97
BINDING SITE FOR RESIDUE GOL E1231
07
AC7
SOFTWARE
GLN B:40 , VAL B:41 , ASN B:44 , GLU B:182 , ASN B:186
BINDING SITE FOR RESIDUE GOL B1231
08
AC8
SOFTWARE
GLN A:40 , VAL A:41 , ASN A:44 , GLU A:182 , ASN A:186 , GOL A:1234
BINDING SITE FOR RESIDUE GOL A1233
09
AC9
SOFTWARE
ASP D:97
BINDING SITE FOR RESIDUE K D1229
10
BC1
SOFTWARE
ASN A:44 , LEU A:173 , GLU A:182 , ASN A:186 , GOL A:1233
BINDING SITE FOR RESIDUE GOL A1234
11
BC2
SOFTWARE
THR B:175 , SER B:177 , GLN B:178
BINDING SITE FOR RESIDUE PO4 B1232
12
BC3
SOFTWARE
THR F:175 , ALA F:176 , GLN F:178
BINDING SITE FOR RESIDUE PO4 F1226
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Info
all CATH domains
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
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