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(-) Description

Title :  CRYSTAL STRUCTURE OF THE KIF5C MOTOR DOMAIN WITH ADP
 
Authors :  S. Inoue, R. Nitta, N. Hirokawa
Date :  02 Jan 15  (Deposition) - 01 Apr 15  (Release) - 20 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinesin, Motor Domain, Motor Protein, Atpase, Nucleotide Binding, Microtubule, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Morikawa, H. Yajima, R. Nitta, S. Inoue, T. Ogura, C. Sato, N. Hirokawa
X-Ray And Cryo-Em Structures Reveal Mutual Conformational Changes Of Kinesin And Gtp-State Microtubules Upon Binding
Embo J. V. 34 1270 2015
PubMed-ID: 25777528  |  Reference-DOI: 10.15252/EMBJ.201490588

(-) Compounds

Molecule 1 - KINESIN HEAVY CHAIN ISOFORM 5C
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET21B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: MOTOR DOMAIN, RESIDUES 1-334
    Gene: KIF5C, NKHC2
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: KINESIN HEAVY CHAIN NEURON-SPECIFIC 2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:14 , ARG A:16 , PRO A:17 , GLN A:87 , THR A:88 , SER A:89 , SER A:90 , GLY A:91 , LYS A:92 , THR A:93 , HIS A:94 , ASP A:124 , GLU A:125BINDING SITE FOR RESIDUE ADP A 2000
2AC2SOFTWAREARG B:14 , ARG B:16 , PRO B:17 , GLN B:87 , SER B:89 , SER B:90 , GLY B:91 , LYS B:92 , THR B:93 , HIS B:94 , GLU B:125BINDING SITE FOR RESIDUE ADP B 2000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3X2T)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn B:256 -Lys B:257

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3X2T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3X2T)

(-) Exons   (0, 0)

(no "Exon" information available for 3X2T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.eeeeee...hhhhhhh.....eeee...eeee....eee..eee....hhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhh.........hhhhhhhhhhhhhhhhh....eeeeeeeeeeee..eeee..........eee.....eee.....eee.hhhhhhhhhhhhhhhhh...hhhhh..eeeeeeeeeee......eeeeeeeeee.......hhhhhhhhhhhh.............hhhhhhh........eeeeeeee.....hhhhhhhhhhhhhhhh..ee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x2t A   4 PAECSIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKNKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVN 334
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193||     206       216       226       236 ||    263       273       283       293       303       313       323       333 
                                                                                                                                                                                                                        194|                                     238|                                                                              
                                                                                                                                                                                                                         198                                      256                                                                              


Chain B from PDB  Type:PROTEIN  Length:326
                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.eeeeee...hhhhhhh.....eeee...eeee.....ee..eee....hhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhh.........hhhhhhhhhhhhhhhh.....eeeeeeeeeeee..eeee.........eeee.....eeee....ee..hhhhhhhhhhhhhhh.....hhhhhh..eeeeeeeeeee......eeeeeeeeeeeee.hhh.........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhhhhhhhh..ee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x2t B   4 PAECSIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKVSKTGAEGANKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNHHHHH 339
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       195       205       215       225       235       245 ||    263       273       283       293       303       313       323       333      
                                                                                                                                                                                                                     191|                                                  247|                                                                                   
                                                                                                                                                                                                                      194                                                   256
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3X2T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3X2T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3X2T)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)

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  KIF5C_MOUSE | P28738
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KIF5C_MOUSE | P28738: 1vfv 1vfw 1vfx 1vfz 2zfi 2zfj 2zfk 2zfl 2zfm 3j6h 3wrd

(-) Related Entries Specified in the PDB File

3j6h NUCLEOTIDE-FREE KINESIN MOTOR DOMAIN COMPLEXED WITH GMPCPP- MICROTUBULE RELATED ID: EMD-5916 RELATED DB: EMDB EMD ENTRY OF NUCLEOTIDE-FREE KINESIN MOTOR DOMAIN COMPLEXED WITH GMPCPP-MICROTUBULE
3wrd THE SAME PROTEIN WITHOUT ANY NUCLEOTIDE