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(-) Description

Title :  CRYSTAL STRUCTURE OF THE KIF5C MOTOR DOMAIN WITHOUT ANY NUCLEOTIDE
 
Authors :  S. Inoue, R. Nitta, N. Hirokawa
Date :  21 Feb 14  (Deposition) - 01 Apr 15  (Release) - 29 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.86
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinesin, Motor Domain, Nucleotide-Free, Motor Protein, Atpase, Nucleotide Binding, Microtubule, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Morikawa, H. Yajima, R. Nitta, S. Inoue, T. Ogura, C. Sato, N. Hirokawa
X-Ray And Cryo-Em Structures Reveal Mutual Conformational Changes Of Kinesin And Gtp-State Microtubules Upon Binding
Embo J. V. 34 1270 2015
PubMed-ID: 25777528  |  Reference-DOI: 10.15252/EMBJ.201490588

(-) Compounds

Molecule 1 - KINESIN HEAVY CHAIN ISOFORM 5C
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: MOTOR DOMAIN, RESIDUES 1-334
    Gene: KIF5C
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: KINESIN HEAVY CHAIN NEURON-SPECIFIC 2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:88 , SER A:89 , SER A:90 , GLY A:91 , LYS A:92 , THR A:93BINDING SITE FOR RESIDUE SO4 A 501
2AC2SOFTWAREGLN B:87 , THR B:88 , SER B:89 , SER B:90 , GLY B:91 , LYS B:92 , THR B:93BINDING SITE FOR RESIDUE SO4 B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WRD)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Thr A:196 -Asn A:197
2Gly B:42 -Gln B:43

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WRD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WRD)

(-) Exons   (0, 0)

(no "Exon" information available for 3WRD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.eeeeee...hhhhhhh.....eeee...eeee....eee..eee....hhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhh.........hhhhhhhhhhhhhhhh.....eeeeeeeeeee................eeee.....eeee....eee.hhhhhhhhhhhhhhhhhh....hhhhhhh.eeeeeeeeeee......eeeeeeeeee.......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhhhhhhhhhhee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wrd A   5 AECSIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKKSLSALGNVISALAEKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVN 334
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234   ||  262       274       284       294       304       314       324       334
                                                                                                                                                                                                                                                                   238|           271|                                                            
                                                                                                                                                                                                                                                                    257            274                                                            


Chain B from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee.eeeeee.....hhhhhh.....eee...eee......ee..eee....hhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhh.........hhhhhhhhhhhhhhh......eeeeeeeeeeee..eeee.........eeee.hhh.eeee....eee.hhhhhhhhhhhhhhhh....hhhhhh..eeeeeeeeeee......eeeeeeeeee...............hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..eeeeeeee.....hhhhhhhhhhhhhhhh..ee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wrd B   4 PAECSIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKVSKTGAEGNKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNHHHH 338
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193|      205       215       225       235       245||     264       274       284       294       304       314       324       334    
                                                                                                                                                                                                                       193|                                               246|                                                                                  
                                                                                                                                                                                                                        196                                                256
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WRD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WRD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WRD)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)

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  KIF5C_MOUSE | P28738
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KIF5C_MOUSE | P28738: 1vfv 1vfw 1vfx 1vfz 2zfi 2zfj 2zfk 2zfl 2zfm 3j6h 3x2t

(-) Related Entries Specified in the PDB File

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