Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
(-)Biological Unit 7
(-)Biological Unit 8
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)
Image Biological Unit 7
Biological Unit 7  (Jmol Viewer)
Image Biological Unit 8
Biological Unit 8  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF THE PERIPLASMIC DOMAIN OF DOTI (CRYSTAL FORM I)
 
Authors :  T. Kuroda, T. Kubori, Y. Uchida, H. Nagai, K. Imada
Date :  18 Sep 14  (Deposition) - 10 Jun 15  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Type Ivb Secretion, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Kuroda, T. Kubori, X. Thanh Bui, A. Hyakutake, Y. Uchida, K. Imada, H. Nagai
Molecular And Structural Analysis Of Legionella Doti Gives Insights Into An Inner Membrane Complex Essential For Type Iv Secretion
Sci Rep V. 5 10912 2015
PubMed-ID: 26039110  |  Reference-DOI: 10.1038/SREP10912

(-) Compounds

Molecule 1 - DOTI
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET15B
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentPERIPLASMIC DOMAIN, UNP RESIDUES 73-212
    GeneDOTI, ICML
    Organism ScientificLEGIONELLA PNEUMOPHILA
    Organism Taxid446
    SynonymICML PROTEIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)A       
Biological Unit 2 (1x) B      
Biological Unit 3 (1x)  C     
Biological Unit 4 (1x)   D    
Biological Unit 5 (1x)    E   
Biological Unit 6 (1x)     F  
Biological Unit 7 (1x)      G 
Biological Unit 8 (1x)       H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 56)

Asymmetric Unit (3, 56)
No.NameCountTypeFull Name
1MPD16Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MRD16Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MRD2Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MRD2Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (3, 7)
No.NameCountTypeFull Name
1MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MRD2Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (3, 7)
No.NameCountTypeFull Name
1MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MRD2Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (3, 7)
No.NameCountTypeFull Name
1MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MRD2Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (3, 7)
No.NameCountTypeFull Name
1MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MRD2Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 7 (3, 7)
No.NameCountTypeFull Name
1MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MRD2Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 8 (3, 7)
No.NameCountTypeFull Name
1MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MRD2Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:132 , LEU A:134 , GLU A:173 , GLN A:177BINDING SITE FOR RESIDUE MRD A 501
02AC2SOFTWAREALA A:89 , PHE A:90 , TYR A:92 , ASN A:125 , MPD A:503 , HOH A:661 , HOH A:725BINDING SITE FOR RESIDUE MRD A 502
03AC3SOFTWAREALA A:88 , ALA A:89 , TYR A:92 , TYR A:97 , GLU A:100 , LEU A:101 , SER A:104 , MRD A:502BINDING SITE FOR RESIDUE MPD A 503
04AC4SOFTWAREGLN A:148 , GLY A:150 , VAL A:151 , LEU A:152 , ARG A:159BINDING SITE FOR RESIDUE MPD A 504
05AC5SOFTWAREASN B:125 , LEU B:134 , GLU B:173 , GLN B:177BINDING SITE FOR RESIDUE MRD B 501
06AC6SOFTWAREALA B:89 , PHE B:90 , TYR B:92 , MPD B:503 , HOH B:619 , HOH B:768BINDING SITE FOR RESIDUE MRD B 502
07AC7SOFTWAREALA B:88 , ALA B:89 , TYR B:92 , TYR B:97 , LEU B:101 , SER B:104 , LEU B:120 , MRD B:502BINDING SITE FOR RESIDUE MPD B 503
08AC8SOFTWAREHOH A:608 , GLN B:148 , LYS B:149 , VAL B:151 , LEU B:152 , ARG B:159BINDING SITE FOR RESIDUE MPD B 504
09AC9SOFTWAREASN C:125 , LYS C:132 , LEU C:134 , GLU C:173 , GLN C:177 , HOH C:740BINDING SITE FOR RESIDUE MRD C 501
10BC1SOFTWAREALA C:89 , PHE C:90 , SER C:123 , ASN C:125 , MPD C:503 , HOH C:708 , HOH C:754BINDING SITE FOR RESIDUE MRD C 502
11BC2SOFTWAREALA C:88 , ALA C:89 , TYR C:92 , TYR C:97 , LEU C:101 , SER C:104 , LEU C:120 , MRD C:502BINDING SITE FOR RESIDUE MPD C 503
12BC3SOFTWAREGLN C:148 , LYS C:149 , VAL C:151 , LEU C:152 , ARG C:159BINDING SITE FOR RESIDUE MPD C 504
13BC4SOFTWAREASN D:125 , LYS D:132 , LEU D:134 , GLN D:177 , HOH D:703BINDING SITE FOR RESIDUE MRD D 501
14BC5SOFTWAREALA D:89 , PHE D:90 , LEU D:120 , MPD D:503 , HOH D:603BINDING SITE FOR RESIDUE MRD D 502
15BC6SOFTWAREALA D:88 , ALA D:89 , TYR D:92 , TYR D:97 , LEU D:101 , SER D:104 , PHE D:116 , LEU D:120 , MRD D:502BINDING SITE FOR RESIDUE MPD D 503
16BC7SOFTWAREGLN D:148 , VAL D:151 , LEU D:152 , ARG D:159 , LEU D:184 , HOH D:756BINDING SITE FOR RESIDUE MPD D 504
17BC8SOFTWAREASN E:125 , LYS E:132 , LEU E:134 , GLU E:173 , GLN E:177BINDING SITE FOR RESIDUE MRD E 501
18BC9SOFTWAREALA E:89 , PHE E:90 , SER E:123 , MPD E:503 , HOH E:620 , HOH E:642BINDING SITE FOR RESIDUE MRD E 502
19CC1SOFTWAREALA E:88 , ALA E:89 , TYR E:92 , TYR E:97 , LEU E:101 , SER E:104 , LEU E:120 , MRD E:502BINDING SITE FOR RESIDUE MPD E 503
20CC2SOFTWAREGLN E:148 , LYS E:149 , VAL E:151 , ARG E:159 , HOH E:686BINDING SITE FOR RESIDUE MPD E 504
21CC3SOFTWARELYS F:132 , LEU F:134 , GLN F:177BINDING SITE FOR RESIDUE MRD F 501
22CC4SOFTWAREALA F:89 , PHE F:90 , TYR F:92 , ASN F:125 , MPD F:503 , HOH F:614 , HOH F:695BINDING SITE FOR RESIDUE MRD F 502
23CC5SOFTWAREALA F:88 , ALA F:89 , TYR F:92 , TYR F:97 , LEU F:101 , SER F:104 , LEU F:120 , MRD F:502BINDING SITE FOR RESIDUE MPD F 503
24CC6SOFTWAREHOH E:610 , GLN F:148 , LYS F:149 , GLY F:150 , VAL F:151 , LEU F:152 , SER F:157 , ARG F:159 , HOH F:683BINDING SITE FOR RESIDUE MPD F 504
25CC7SOFTWAREASN G:125 , LYS G:132 , LEU G:134 , GLN G:177 , HOH G:715BINDING SITE FOR RESIDUE MRD G 501
26CC8SOFTWAREALA G:89 , PHE G:90 , TYR G:92 , ASN G:125 , MPD G:503 , HOH G:697 , HOH G:769BINDING SITE FOR RESIDUE MRD G 502
27CC9SOFTWAREALA G:88 , ALA G:89 , TYR G:92 , TYR G:97 , LEU G:101 , SER G:104 , LEU G:120 , MRD G:502BINDING SITE FOR RESIDUE MPD G 503
28DC1SOFTWAREGLN G:148 , LYS G:149 , GLY G:150 , VAL G:151 , LEU G:152 , ARG G:159BINDING SITE FOR RESIDUE MPD G 504
29DC2SOFTWAREASN H:125 , LYS H:132 , LEU H:134 , GLU H:173 , GLN H:177 , HOH H:683BINDING SITE FOR RESIDUE MRD H 501
30DC3SOFTWAREALA H:89 , PHE H:90 , SER H:123 , ASN H:125 , MPD H:503 , HOH H:741BINDING SITE FOR RESIDUE MRD H 502
31DC4SOFTWAREALA H:88 , ALA H:89 , TYR H:92 , LEU H:101 , SER H:104 , LEU H:120 , MRD H:502BINDING SITE FOR RESIDUE MPD H 503
32DC5SOFTWAREGLN H:148 , LYS H:149 , GLY H:150 , VAL H:151 , LEU H:152 , ARG H:159BINDING SITE FOR RESIDUE MPD H 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WZ4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3WZ4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WZ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WZ4)

(-) Exons   (0, 0)

(no "Exon" information available for 3WZ4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeeeee..eeeeeeeeeeeeeee....eeeeeeeeeeeeee.........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz4 A  71 HmQSDSAVLQWANQAAIAAFTYNFVNYRDELQASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRVQmPILVTYQSASEFTQQNNVVTmLITRVSTLNSPRGIGISQFVVGPA 207
                             |      80        90       100       110       120       130       140       150       160 |     170       180  |    190       200       
                             |                                                                                       162-MSE              183-MSE                    
                            72-MSE                                                                                                                                   

Chain B from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeeeee..eeeeeeeeeeeeeee....eeeeeeeeeeeeee.........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz4 B  71 HmQSDSAVLQWANQAAIAAFTYNFVNYRDELQASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRVQmPILVTYQSASEFTQQNNVVTmLITRVSTLNSPRGIGISQFVVGPA 207
                             |      80        90       100       110       120       130       140       150       160 |     170       180  |    190       200       
                            72-MSE                                                                                   162-MSE              183-MSE                    

Chain C from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeeeee..eeeeeeeeeeeeeeee..eeeeeeeeeeeeeee.........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz4 C  69 GSHmQSDSAVLQWANQAAIAAFTYNFVNYRDELQASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRVQmPILVTYQSASEFTQQNNVVTmLITRVSTLNSPRGIGISQFVVGPA 207
                               |    78        88        98       108       118       128       138       148       158   |   168       178    |  188       198         
                              72-MSE                                                                                   162-MSE              183-MSE                    

Chain D from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeeeee..eeeeeeeeeeeeeeee..eeeeeeeeeeeeeee.........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz4 D  72 mQSDSAVLQWANQAAIAAFTYNFVNYRDELQASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRVQmPILVTYQSASEFTQQNNVVTmLITRVSTLNSPRGIGISQFVVGPA 207
                            |       81        91       101       111       121       131       141       151       161|      171       181 |     191       201      
                           72-MSE                                                                                   162-MSE              183-MSE                    

Chain E from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeeeee..eeeeeeeeeeeeeeee..eeeeeeeeeeeeeee.........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz4 E  69 GSHmQSDSAVLQWANQAAIAAFTYNFVNYRDELQASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRVQmPILVTYQSASEFTQQNNVVTmLITRVSTLNSPRGIGISQFVVGPA 207
                               |    78        88        98       108       118       128       138       148       158   |   168       178    |  188       198         
                              72-MSE                                                                                   162-MSE              183-MSE                    

Chain F from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeeeee..eeeeeeeeeeeeeee....eeeeeeeeeeeeee.........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz4 F  72 mQSDSAVLQWANQAAIAAFTYNFVNYRDELQASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRVQmPILVTYQSASEFTQQNNVVTmLITRVSTLNSPRGIGISQFVVGPA 207
                            |       81        91       101       111       121       131       141       151       161|      171       181 |     191       201      
                           72-MSE                                                                                   162-MSE              183-MSE                    

Chain G from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeeeee..eeeeeeeeeeeeeee....eeeeeeeeeeeeee.........eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz4 G  69 GSHmQSDSAVLQWANQAAIAAFTYNFVNYRDELQASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRVQmPILVTYQSASEFTQQNNVVTmLITRVSTLNSPRGIGISQFVVGPAS 208
                               |    78        88        98       108       118       128       138       148       158   |   168       178    |  188       198       208
                              72-MSE                                                                                   162-MSE              183-MSE                     

Chain H from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeeeee..eeeeeeeeeeeeeeee..eeeeeeeeeeeeeee.........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz4 H  69 GSHmQSDSAVLQWANQAAIAAFTYNFVNYRDELQASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRVQmPILVTYQSASEFTQQNNVVTmLITRVSTLNSPRGIGISQFVVGPA 207
                               |    78        88        98       108       118       128       138       148       158   |   168       178    |  188       198         
                              72-MSE                                                                                   162-MSE              183-MSE                    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WZ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WZ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WZ4)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MPD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MRD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3wz4)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]
    Biological Unit 7  [ Jena3D ]
    Biological Unit 8  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3wz4
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  O54626_LEGPN | O54626
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  O54626_LEGPN | O54626
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O54626_LEGPN | O546263wz5

(-) Related Entries Specified in the PDB File

3wz3 3wz5