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(-) Description

Title :  STRUCTURE OF THE PERIPLASMIC DOMAIN OF DOTI (CRYSTAL FORM II)
 
Authors :  T. Kuroda, T. Kubori, Y. Uchida, H. Nagai, K. Imada
Date :  18 Sep 14  (Deposition) - 10 Jun 15  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Type Ivb Secretion, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Kuroda, T. Kubori, X. Thanh Bui, A. Hyakutake, Y. Uchida, K. Imada, H. Nagai
Molecular And Structural Analysis Of Legionella Doti Gives Insights Into An Inner Membrane Complex Essential For Type Iv Secretion
Sci Rep V. 5 10912 2015
PubMed-ID: 26039110  |  Reference-DOI: 10.1038/SREP10912

(-) Compounds

Molecule 1 - DOTI
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: PERIPLASMIC DOMAIN, UNP RESIDUES 73-212
    Gene: DOTI, ICML
    Organism Scientific: LEGIONELLA PNEUMOPHILA
    Organism Taxid: 446
    Synonym: ICML PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3WZ5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WZ5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3WZ5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WZ5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WZ5)

(-) Exons   (0, 0)

(no "Exon" information available for 3WZ5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.ee..hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..ee.eee....eeeeeeee..eeeeeeeeeeee..........eeeeeeeeeee.........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz5 A  73 QSDSAVLQWANQAAIAAFTYNFVNYRDELQASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRVQmPILVTYQSASEFTQQNNVVTmLITRVSTLNSPRGIGISQFVVGPA 207
                                    82        92       102       112       122       132       142       152       162       172       182|      192       202     
                                                                                                                   162-MSE              183-MSE                    


Chain B from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh..ee..hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeeeee..eeeeeeeeeeeeeee....eeeeeeeeeeeeee.........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz5 B  73 QSDSAVLQWANQAAIAAFTYNFVNYRDELQASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRVQmPILVTYQSASEFTQQNNVVTmLITRVSTLNSPRGIGISQFVVGPA 207
                                    82        92       102       112       122       132       142       152       162       172       182|      192       202     
                                                                                                                   162-MSE              183-MSE                    


Chain C from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeeeeee..eeeeeeeeeeeeeee....eeeeeeeeeeeeee.........eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz5 C  73 QSDSAVLQWANQAAIAAFTYNFVNYRDELQASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRVQmPILVTYQSASEFTQQNNVVTmLITRVSTLNSPRGIGISQFVVGPAS 208
                                    82        92       102       112       122       132       142       152       162       172       182|      192       202      
                                                                                                                   162-MSE              183-MSE                     


Chain D from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh..ee..hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee....eeeeeeee..eeeeeeeeeeeeeeee..eeeeeeeeeeeeeee.........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wz5 D  73 QSDSAVLQWANQAAIAAFTYNFVNYRDELQASSGFFTAEGWDQFLGALEQSNNLDAVKAKKLVVSAVATRAPIILQKGVLNGRYSWRVQmPILVTYQSASEFTQQNNVVTmLITRVSTLNSPRGIGISQFVVGPA 207
                                    82        92       102       112       122       132       142       152       162       172       182|      192       202     
                                                                                                                   162-MSE              183-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WZ5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WZ5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WZ5)

(-) Gene Ontology  (2, 2)

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 Related Entries

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        O54626_LEGPN | O54626: 3wz4

(-) Related Entries Specified in the PDB File

3wz3 3wz4