3WBR - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF CARBOHYDRATE RECOGNITION DOMAIN OF BLOOD DENDRITIC CELL ANTIGEN-2 (BDCA2) LECTIN (CRYSTAL FORM-3)

Authors :   M. Nagae, A. Ikeda, Y. Kitago, N. Matsumoto, K. Yamamoto, Y. Yamaguchi

Date :   20 May 13 (Deposition) - 25 Dec 13 (Release) - 09 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,G  (1x)
Biol. Unit 3: D,E  (1x)
Biol. Unit 4: F,H  (1x)

Keywords :   C-Type Lectin Fold, Immune Receptor, Complex-Type N-Glycan, Carbohydrate Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Nagae, A. Ikeda, Y. Kitago, N. Matsumoto, K. Yamamoto, Y. Yamaguchi
Crystal Structures Of Carbohydrate Recognition Domain Of Blood Dendritic Cell Antigen-2 (Bdca2) Reveal A Common Domain-Swapped Dimer
Proteins 2013
PubMed-ID: 24425442 | Reference-DOI: 10.1002/PROT.24504

Molecule 1 - C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER C
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PCOLD-TEV VECTOR
	Expression System Strain	:	ROSETTA2 (DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 83-210
	Gene	:	BDCA2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	BLOOD DENDRITIC CELL ANTIGEN 2, BDCA-2, C-TYPE LECTIN SUPERFAMILY MEMBER 7, DENDRITIC LECTIN

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C				G
Biological Unit 3 (1x)	:				D	E
Biological Unit 4 (1x)	:						F		H

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3WBR)

(no "Site" information available for 3WBR)

Asymmetric Unit

No.	Residues
1	A:83	-	A:94
2	A:111	-	A:206
3	A:180	-	A:198
4	B:83	-	B:94
5	B:111	-	B:206
6	B:180	-	B:198
7	C:83	-	C:94
8	C:111	-	C:206
9	C:180	-	C:198
10	D:83	-	D:94
11	D:111	-	D:206
12	D:180	-	D:198
13	E:83	-	E:94
14	E:111	-	E:206
15	E:180	-	E:198
16	F:83	-	F:94
17	F:111	-	F:206
18	F:180	-	F:198
19	G:83	-	G:94
20	G:111	-	G:206
21	G:180	-	G:198
22	H:83	-	H:94
23	H:111	-	H:206
24	H:180	-	H:198

Asymmetric Unit

No.	Residues
1	Glu A:172	-	Pro A:173
2	Glu B:172	-	Pro B:173
3	Glu C:172	-	Pro C:173
4	Glu D:172	-	Pro D:173
5	Glu E:172	-	Pro E:173
6	Glu F:172	-	Pro F:173
7	Glu G:172	-	Pro G:173
8	Glu H:172	-	Pro H:173

(no "SAP(SNP)/Variant" information available for 3WBR)

Asymmetric Unit (2, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC4C_HUMAN	90-207	8	A:90-207 B:90-207 C:90-207 D:90-207 E:90-207 F:90-207 G:90-207 H:90-207
2	C_TYPE_LECTIN_1	PS00615	C-type lectin domain signature.	CLC4C_HUMAN	180-206	8	A:180-206 B:180-206 C:180-206 D:180-206 E:180-206 F:180-206 G:180-206 H:180-206

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC4C_HUMAN	90-207	2	A:90-207 B:90-207 - - - - - -
2	C_TYPE_LECTIN_1	PS00615	C-type lectin domain signature.	CLC4C_HUMAN	180-206	2	A:180-206 B:180-206 - - - - - -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC4C_HUMAN	90-207	2	- - C:90-207 - - - G:90-207 -
2	C_TYPE_LECTIN_1	PS00615	C-type lectin domain signature.	CLC4C_HUMAN	180-206	2	- - C:180-206 - - - G:180-206 -

Biological Unit 3 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC4C_HUMAN	90-207	2	- - - D:90-207 E:90-207 - - -
2	C_TYPE_LECTIN_1	PS00615	C-type lectin domain signature.	CLC4C_HUMAN	180-206	2	- - - D:180-206 E:180-206 - - -

Biological Unit 4 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	C_TYPE_LECTIN_2	PS50041	C-type lectin domain profile.	CLC4C_HUMAN	90-207	2	- - - - - F:90-207 - H:90-207
2	C_TYPE_LECTIN_1	PS00615	C-type lectin domain signature.	CLC4C_HUMAN	180-206	2	- - - - - F:180-206 - H:180-206

(no "Exon" information available for 3WBR)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:128
 aligned with CLC4C_HUMAN | Q8WTT0 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:129
                                    91       101       111       121       131       141       151       161       171       181       191       201         
          CLC4C_HUMAN    82 CCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKK 210
               SCOP domains d3wbra_ A: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhhh..ee....hhhhhhhhhh.......eeeeeee.......ee.......................eeeeeeee.-.eeeeeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: A:90-207 UniProt: 90-207                                                                        --- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1            ---- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wbr A  82 SCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRS-EEWGWNDIHCHVPQKSICKMKK 210
                                    91       101       111       121       131       141       151       161       171       181     | 191       201         
                                                                                                                                   187 |                     
                                                                                                                                     189

Chain B from PDB  Type:PROTEIN  Length:128
 aligned with CLC4C_HUMAN | Q8WTT0 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:129
                                    91       101       111       121       131       141       151       161       171       181       191       201         
          CLC4C_HUMAN    82 CCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKK 210
               SCOP domains d3wbrb_ B: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhh......eeeeeee.......ee.......................eeeeeeee.-.eeeeeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: B:90-207 UniProt: 90-207                                                                        --- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1            ---- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wbr B  82 SCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRS-EEWGWNDIHCHVPQKSICKMKK 210
                                    91       101       111       121       131       141       151       161       171       181     | 191       201         
                                                                                                                                   187 |                     
                                                                                                                                     189

Chain C from PDB  Type:PROTEIN  Length:127
 aligned with CLC4C_HUMAN | Q8WTT0 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:129
                                    91       101       111       121       131       141       151       161       171       181       191       201         
          CLC4C_HUMAN    82 CCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKK 210
               SCOP domains d3wbrc_ C: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhh......eeeeeee.......ee.......................eeeeeee..--.eeeeee.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: C:90-207 UniProt: 90-207                                                                        --- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1            ---- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wbr C  82 SCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRS--EWGWNDIHCHVPQKSICKMKK 210
                                    91       101       111       121       131       141       151       161       171       181     | 191       201         
                                                                                                                                   187  |                    
                                                                                                                                      190

Chain D from PDB  Type:PROTEIN  Length:126
 aligned with CLC4C_HUMAN | Q8WTT0 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:128
                                    92       102       112       122       132       142       152       162       172       182       192       202        
          CLC4C_HUMAN    83 CPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKK 210
               SCOP domains d3wbrd_ D: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhh.....eeeeeeee.......ee.......................eeeeeee..--.eeeeee.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------C_TYPE_LECTIN_2  PDB: D:90-207 UniProt: 90-207                                                                        --- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1            ---- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wbr D  83 CPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRS--EWGWNDIHCHVPQKSICKMKK 210
                                    92       102       112       122       132       142       152       162       172       182    |  192       202        
                                                                                                                                  187  |                    
                                                                                                                                     190

Chain E from PDB  Type:PROTEIN  Length:125
 aligned with CLC4C_HUMAN | Q8WTT0 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:126
                                    92       102       112       122       132       142       152       162       172       182       192       202      
          CLC4C_HUMAN    83 CPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKM 208
               SCOP domains d3wbre_ E: automated matches                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhh......eeeeeee.......ee.......................eeeeeee...-.eeeeee.....eeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -------C_TYPE_LECTIN_2  PDB: E:90-207 UniProt: 90-207                                                                        - PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1            -- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wbr E  83 CPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSS-EWGWNDIHCHVPQKSICKM 208
                                    92       102       112       122       132       142       152       162       172       182     | 192       202      
                                                                                                                                   188 |                  
                                                                                                                                     190

Chain F from PDB  Type:PROTEIN  Length:127
 aligned with CLC4C_HUMAN | Q8WTT0 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:128
                                    92       102       112       122       132       142       152       162       172       182       192       202        
          CLC4C_HUMAN    83 CPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKK 210
               SCOP domains d3wbrf_ F: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhh.....eeeeeeee.......ee.......................eeeeeee...-.eeeeee.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------C_TYPE_LECTIN_2  PDB: F:90-207 UniProt: 90-207                                                                        --- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1            ---- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wbr F  83 CPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSS-EWGWNDIHCHVPQKSICKMKK 210
                                    92       102       112       122       132       142       152       162       172       182     | 192       202        
                                                                                                                                   188 |                    
                                                                                                                                     190

Chain G from PDB  Type:PROTEIN  Length:127
 aligned with CLC4C_HUMAN | Q8WTT0 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:127
                                    92       102       112       122       132       142       152       162       172       182       192       202       
          CLC4C_HUMAN    83 CPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMK 209
               SCOP domains d3wbrg_ G: automated matches                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhh.......eeeeeee.......ee.......................eeeeeeee...eeeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------C_TYPE_LECTIN_2  PDB: G:90-207 UniProt: 90-207                                                                        -- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1            --- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wbr G  83 CPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMK 209
                                    92       102       112       122       132       142       152       162       172       182       192       202

Chain H from PDB  Type:PROTEIN  Length:126
 aligned with CLC4C_HUMAN | Q8WTT0 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:127
                                    92       102       112       122       132       142       152       162       172       182       192       202       
          CLC4C_HUMAN    83 CPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMK 209
               SCOP domains d3wbrh_ H: automated matches                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhh.....eeeeeeee.......ee.......................eeeeeee...-.eeeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------C_TYPE_LECTIN_2  PDB: H:90-207 UniProt: 90-207                                                                        -- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1            --- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wbr H  83 CPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSS-EWGWNDIHCHVPQKSICKMK 209
                                    92       102       112       122       132       142       152       162       172       182     | 192       202       
                                                                                                                                   188 |                   
                                                                                                                                     190

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: C-type lectin-like (322)

Superfamily: C-type lectin-like (322)

Family: automated matches (88)

Protein domain: automated matches (88)

Human (Homo sapiens) [TaxId: 9606] (60)

1a	d3wbra_	A:
1b	d3wbrb_	B:
1c	d3wbrc_	C:
1d	d3wbrd_	D:
1e	d3wbre_	E:
1f	d3wbrf_	F:
1g	d3wbrg_	G:
1h	d3wbrh_	H:

(no "CATH Domain" information available for 3WBR)

(no "Pfam Domain" information available for 3WBR)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (CLC4C_HUMAN | Q8WTT0)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
biological process
	GO:0002250	adaptive immune response	An immune response mediated by cells expressing specific receptors for antigen produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory).
	GO:0002376	immune system process	Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
	GO:0045087	innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
	GO:0002223	stimulatory C-type lectin receptor signaling pathway	Any series of molecular signals generated as a consequence of binding to a C-type lectin receptor capable of cellular activation.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 3wbr)

	Sites
(no "Sites" information available for 3wbr)

	Cis Peptide Bonds
		Glu A:172 - Pro A:173	[ RasMol ]
		Glu B:172 - Pro B:173	[ RasMol ]
		Glu C:172 - Pro C:173	[ RasMol ]
		Glu D:172 - Pro D:173	[ RasMol ]
		Glu E:172 - Pro E:173	[ RasMol ]
		Glu F:172 - Pro F:173	[ RasMol ]
		Glu G:172 - Pro G:173	[ RasMol ]
		Glu H:172 - Pro H:173	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
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Access by PDB/NDB ID
	3wbr
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
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	CLC4C_HUMAN \| Q8WTT0
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		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	CLC4C_HUMAN \| Q8WTT0
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	CLC4C_HUMAN \| Q8WTT0	:	3wbp 3wbq 4zes 4zet

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (24, 24)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 16)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 8)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File