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(-) Description

Title :  BLOOD DENDRITIC CELL ANTIGEN 2 (BDCA-2) COMPLEXED WITH METHYL-MANNOSIDE
 
Authors :  S. A. F. Jegouzo, H. Feinberg, T. Dungarwalla, K. Drickamer, W. I. Weis, M. E. Taylor
Date :  20 Apr 15  (Deposition) - 27 May 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  C-Type Lectin, Carbohydrate-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. A. Jegouzo, H. Feinberg, T. Dungarwalla, K. Drickamer, W. I. Weis, M. E. Taylor
A Novel Mechanism For Binding Of Galactose-Terminated Glycans By The C-Type Carbohydrate Recognition Domain In Blood Dendritic Cell Antigen 2.
J. Biol. Chem. V. 290 16759 2015
PubMed-ID: 25995448  |  Reference-DOI: 10.1074/JBC.M115.660613

(-) Compounds

Molecule 1 - C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER C
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 67-213
    Gene: CLEC4C, BDCA2, CLECSF11, CLECSF7, DLEC, HECL, UNQ9361/PRO34150
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BLOOD DENDRITIC CELL ANTIGEN 2,BDCA-2,C-TYPE LECTIN SUPERFAMILY MEMBER 7,DENDRITIC LECTIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2MG2Ligand/IonMAGNESIUM ION
3MMA2Ligand/IonO1-METHYL-MANNOSE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MG-1Ligand/IonMAGNESIUM ION
3MMA1Ligand/IonO1-METHYL-MANNOSE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MG-1Ligand/IonMAGNESIUM ION
3MMA1Ligand/IonO1-METHYL-MANNOSE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:172 , ASN A:174 , GLU A:178 , ASN A:194 , ASP A:195 , CA A:302 , HOH A:414 , HOH A:441 , HOH A:500 , HOH A:524 , HOH A:557binding site for residue MMA A 301
2AC2SOFTWAREGLU A:172 , ASN A:174 , GLU A:178 , ASN A:194 , ASP A:195 , MMA A:301binding site for residue CA A 302
3AC3SOFTWAREGLU B:172 , ASN B:174 , GLU B:178 , ASN B:194 , ASP B:195 , CA B:302 , HOH B:404 , HOH B:471 , HOH B:503binding site for residue MMA B 301
4AC4SOFTWAREGLU B:172 , ASN B:174 , GLU B:178 , ASN B:194 , ASP B:195 , MMA B:301binding site for residue CA B 302
5AC5SOFTWAREHOH A:457 , HOH A:601 , HOH B:425 , HOH B:437 , HOH B:474 , HOH B:526binding site for residue MG B 303
6AC6SOFTWAREGLU A:78 , HOH A:431 , HOH A:493 , HOH A:501 , ILE B:213 , HOH B:419binding site for residue MG B 304

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:70 -A:82
2A:83 -A:94
3A:111 -A:206
4A:180 -A:198
5B:70 -B:82
6B:83 -B:94
7B:111 -B:206
8B:180 -B:198

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Glu A:172 -Pro A:173
2Thr B:85 -Pro B:86
3Glu B:172 -Pro B:173

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZES)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZES)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZES)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.......eeeee...eee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhh.....eeeeee........ee......hhhhh.............eeeeeee...eeeeeee.....eeeeeeee.eee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zes A  67 ALTCVMEGKDIEDWSCCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKKIYI 213
                                    76        86        96       106       116       126       136       146       156       166       176       186       196       206       


Chain B from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eeeeee...eee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhh......eeeeee........ee......hhhhh.............eeeeeee...eeeeeee.....eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zes B  67 ALTCVMEGKDIEDWSCCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKKIYI 213
                                    76        86        96       106       116       126       136       146       156       166       176       186       196       206
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZES)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZES)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZES)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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  4zes
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 Related Entries

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UniProtKB/Swiss-Prot
        CLC4C_HUMAN | Q8WTT0: 3wbp 3wbq 3wbr 4zet

(-) Related Entries Specified in the PDB File

4zet