3VJM - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN DEPIPTIDYL PEPTIDASE IV (DPP-4) IN COMPLEX WITH A PROLYLTHIAZOLIDINE INHIBITOR #1

Authors :   F. Akahoshi, H. Kishida, I. Miyaguchi, T. Yoshida, S. Ishii

Date :   24 Oct 11 (Deposition) - 15 Aug 12 (Release) - 15 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A,B

Keywords :   Alpha/Beta, Beta-Propeller, Aminopeptidase, Serine Protease, Signal- Anchor, Transmembrane, Diabetes, Glycoprotein, Cell Membrane, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Yoshida, F. Akahoshi, H. Sakashita, S. Sonda, M. Takeuchi, Y. Tanaka, M. Nabeno, H. Kishida, I. Miyaguchi, Y. Hayashi
Fused Bicyclic Heteroarylpiperazine-Substituted L-Prolylthiazolidines As Highly Potent Dpp-4 Inhibitors Lacking The Electrophilic Nitrile Group
Bioorg. Med. Chem. V. 20 5033 2012
PubMed-ID: 22824762 | Reference-DOI: 10.1016/J.BMC.2012.06.033

Molecule 1 - DIPEPTIDYL PEPTIDASE 4
	Chains	:	A, B
	EC Number	:	3.4.14.5
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	EXPRESSF+
	Expression System Plasmid	:	PPSC8
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	UNP RESIDUES 33-766
	Gene	:	DPP4, ADCP2, CD26
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ADABP, ADENOSINE DEAMINASE COMPLEXING PROTEIN 2, ADCP-2, DIPEPTIDYL PEPTIDASE IV, DPP IV, T-CELL ACTIVATION ANTIGEN CD26, TP103, DIPEPTIDYL PEPTIDASE 4 MEMBRANE FORM, DIPEPTIDYL PEPTIDASE IV MEMBRANE FORM, DIPEPTIDYL PEPTIDASE 4 SOLUBLE FORM, DIPEPTIDYL PEPTIDASE IV SOLUBLE FORM

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 19)

No.	Name	Count	Type	Full Name
1	NAG	17	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
2	W61	2	Ligand/Ion	1,3-THIAZOLIDIN-3-YL[(2S,4S)-4-{4-[2-(TRIFLUOROMETHYL)QUINOLIN-4-YL]PIPERAZIN-1-YL}PYRROLIDIN-2-YL]METHANONE

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:125 , GLU A:205 , GLU A:206 , PHE A:357 , ARG A:358 , TYR A:585 , SER A:630 , TYR A:631 , VAL A:656 , TYR A:662 , TYR A:666 , ASN A:710 , VAL A:711 , HOH A:2071	BINDING SITE FOR RESIDUE W61 A 1000
02	AC2	SOFTWARE	VAL A:78 , ASN A:85 , SER A:86 , SER A:87 , HOH A:2466	BINDING SITE FOR RESIDUE NAG A 1085
03	AC3	SOFTWARE	GLU A:73 , ASN A:75 , ASN A:92	BINDING SITE FOR RESIDUE NAG A 1092
04	AC4	SOFTWARE	ASN A:219 , THR A:221 , GLN A:308 , GLU A:309 , NAG A:1220 , HOH A:2149 , HOH A:2262	BINDING SITE FOR RESIDUE NAG A 1219
05	AC5	SOFTWARE	ASN A:272 , TYR A:330 , GLU A:332 , NAG A:1219 , HOH A:2391	BINDING SITE FOR RESIDUE NAG A 1220
06	AC6	SOFTWARE	ILE A:194 , ASN A:229 , THR A:231 , GLU A:232 , HOH A:2141 , HOH A:2416	BINDING SITE FOR RESIDUE NAG A 1229
07	AC7	SOFTWARE	TRP A:187 , ASN A:281 , NAG A:1282 , HOH A:2109 , HOH A:2237 , LEU B:479	BINDING SITE FOR RESIDUE NAG A 1281
08	AC8	SOFTWARE	THR A:188 , NAG A:1281 , HOH A:2100 , HOH A:2109 , HOH A:2352	BINDING SITE FOR RESIDUE NAG A 1282
09	AC9	SOFTWARE	ILE A:319 , ASN A:321 , MET A:348 , SER A:349 , THR A:350 , HOH A:2445	BINDING SITE FOR RESIDUE NAG A 1321
10	BC1	SOFTWARE	ARG B:125 , GLU B:205 , GLU B:206 , PHE B:357 , ARG B:358 , TYR B:585 , SER B:630 , TYR B:631 , VAL B:656 , TYR B:662 , TYR B:666 , ASN B:710 , VAL B:711 , HOH B:2536 , HOH B:2706	BINDING SITE FOR RESIDUE W61 B 1000
11	BC2	SOFTWARE	GLU B:67 , VAL B:78 , ASN B:85 , SER B:86 , SER B:87 , HOH B:2721	BINDING SITE FOR RESIDUE NAG B 1085
12	BC3	SOFTWARE	ARG B:147 , ILE B:148 , ASN B:150	BINDING SITE FOR RESIDUE NAG B 1150
13	BC4	SOFTWARE	ASN B:219 , THR B:221 , GLN B:308 , GLU B:309 , NAG B:1220	BINDING SITE FOR RESIDUE NAG B 1219
14	BC5	SOFTWARE	TYR B:330 , GLU B:332 , NAG B:1219	BINDING SITE FOR RESIDUE NAG B 1220
15	BC6	SOFTWARE	ILE B:194 , ASN B:229 , THR B:231 , GLU B:232 , NAG B:1230 , HOH B:2801	BINDING SITE FOR RESIDUE NAG B 1229
16	BC7	SOFTWARE	GLU B:232 , NAG B:1229	BINDING SITE FOR RESIDUE NAG B 1230
17	BC8	SOFTWARE	VAL B:279 , ASN B:281	BINDING SITE FOR RESIDUE NAG B 1281
18	BC9	SOFTWARE	ASN B:321 , SER B:349 , ARG B:596 , NAG B:1322	BINDING SITE FOR RESIDUE NAG B 1321
19	CC1	SOFTWARE	ASP B:678 , NAG B:1321	BINDING SITE FOR RESIDUE NAG B 1322

Asymmetric/Biological Unit

No.	Residues
1	A:328	-	A:339
2	A:385	-	A:394
3	A:444	-	A:447
4	A:454	-	A:472
5	A:649	-	A:762
6	B:328	-	B:339
7	B:385	-	B:394
8	B:444	-	B:447
9	B:454	-	B:472
10	B:649	-	B:762

Asymmetric/Biological Unit

No.	Residues
1	Gly A:474	-	Pro A:475
2	Gly B:474	-	Pro B:475

(no "SAP(SNP)/Variant" information available for 3VJM)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PRO_ENDOPEP_SER	PS00708	Prolyl endopeptidase family serine active site.	DPP4_HUMAN	605-635	2	A:605-635 B:605-635

Asymmetric/Biological Unit (24, 48)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000360534	1a	ENSE00001428031	chr2:162931052-162930486	567	DPP4_HUMAN	1-2	2	0	-	-
1.2b	ENST00000360534	2b	ENSE00001405430	chr2:162929996-162929909	88	DPP4_HUMAN	3-32	30	0	-	-
1.3a	ENST00000360534	3a	ENSE00001407496	chr2:162904011-162903913	99	DPP4_HUMAN	32-65	34	2	A:38-65 B:38-65	28 28
1.4a	ENST00000360534	4a	ENSE00001401296	chr2:162903516-162903425	92	DPP4_HUMAN	65-95	31	2	A:65-95 B:65-95	31 31
1.5	ENST00000360534	5	ENSE00001700120	chr2:162902122-162902042	81	DPP4_HUMAN	96-122	27	2	A:96-122 B:96-122	27 27
1.6	ENST00000360534	6	ENSE00001731265	chr2:162895694-162895642	53	DPP4_HUMAN	123-140	18	2	A:123-140 B:123-140	18 18
1.7b	ENST00000360534	7b	ENSE00001687658	chr2:162895531-162895459	73	DPP4_HUMAN	140-164	25	2	A:140-164 B:140-164	25 25
1.8c	ENST00000360534	8c	ENSE00001752447	chr2:162894932-162894812	121	DPP4_HUMAN	165-205	41	2	A:165-205 B:165-205	41 41
1.9	ENST00000360534	9	ENSE00001671980	chr2:162891834-162891674	161	DPP4_HUMAN	205-258	54	2	A:205-258 B:205-258	54 54
1.10	ENST00000360534	10	ENSE00001629068	chr2:162890163-162890051	113	DPP4_HUMAN	259-296	38	2	A:259-296 B:259-296	38 38
1.12	ENST00000360534	12	ENSE00001774486	chr2:162881449-162881314	136	DPP4_HUMAN	296-341	46	2	A:296-341 B:296-341	46 46
1.13	ENST00000360534	13	ENSE00001608277	chr2:162879309-162879265	45	DPP4_HUMAN	342-356	15	2	A:342-356 B:342-356	15 15
1.15	ENST00000360534	15	ENSE00001792529	chr2:162877198-162877091	108	DPP4_HUMAN	357-392	36	2	A:357-392 B:357-392	36 36
1.16	ENST00000360534	16	ENSE00001609652	chr2:162876806-162876739	68	DPP4_HUMAN	393-415	23	2	A:393-415 B:393-415	23 23
1.17	ENST00000360534	17	ENSE00001661516	chr2:162875786-162875733	54	DPP4_HUMAN	415-433	19	2	A:415-433 B:415-433	19 19
1.18	ENST00000360534	18	ENSE00001734062	chr2:162875360-162875239	122	DPP4_HUMAN	433-474	42	2	A:433-474 B:433-474	42 42
1.20	ENST00000360534	20	ENSE00001689663	chr2:162873665-162873618	48	DPP4_HUMAN	474-490	17	2	A:474-490 B:474-490	17 17
1.21b	ENST00000360534	21b	ENSE00001601165	chr2:162873376-162873278	99	DPP4_HUMAN	490-523	34	2	A:490-523 B:490-523	34 34
1.22a	ENST00000360534	22a	ENSE00001793185	chr2:162870975-162870906	70	DPP4_HUMAN	523-546	24	2	A:523-546 B:523-546	24 24
1.23	ENST00000360534	23	ENSE00001624874	chr2:162868497-162868303	195	DPP4_HUMAN	546-611	66	2	A:546-611 B:546-611	66 66
1.24	ENST00000360534	24	ENSE00001805530	chr2:162865805-162865751	55	DPP4_HUMAN	611-629	19	2	A:611-629 B:611-629	19 19
1.25	ENST00000360534	25	ENSE00001766271	chr2:162865171-162865072	100	DPP4_HUMAN	630-663	34	2	A:630-663 B:630-663	34 34
1.26a	ENST00000360534	26a	ENSE00001658910	chr2:162862319-162862255	65	DPP4_HUMAN	663-684	22	2	A:663-684 B:663-684	22 22
1.27a	ENST00000360534	27a	ENSE00001776448	chr2:162851882-162851810	73	DPP4_HUMAN	685-709	25	2	A:685-709 B:685-709	25 25
1.28	ENST00000360534	28	ENSE00001768665	chr2:162851544-162851471	74	DPP4_HUMAN	709-733	25	2	A:709-733 B:709-733	25 25
1.29b	ENST00000360534	29b	ENSE00001420909	chr2:162849894-162848751	1144	DPP4_HUMAN	734-766	33	2	A:734-766 B:734-766	33 33

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:729
 aligned with DPP4_HUMAN | P27487 from UniProtKB/Swiss-Prot  Length:766

    Alignment length:729
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757         
           DPP4_HUMAN    38 DSRKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLP 766
               SCOP domains d3vjma1 A:38-508 Dipeptidyl peptidase IV/CD26, N-terminal domain                                                                                                                                                                                                                                                                                                                                                                                                                       d3vjma2 A:509-766 Dipeptidyl peptidase IV/CD26, C-terminal domain                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhhhhh.........ee....eeeeee..eeeeee.....eeeee...........eeeeee.....eeeeeeeeee.....eeeeeeeee....ee.........eeeeee......eeeee..eeeee.......ee.........eee...hhhhhhhh......eee.....eeeeeeee.....eeeeee.........eeeeee.........eeeeeeee.hhh.......eee...hhhhhh..eeeeeeeeee..eeeeeeee....eeeeeeeeee....eeee.hhhheeee..............ee.....eeeeeee.....eeeeeee......ee.......eeeeeee...eeeeee.hhhhh....eeeeee..eeeeeee............eeeee.....eeeeee......eeeeee....eeeeeee.hhhhhhhhhhee..eeeeeeeee..eeeeeeeee.........eeeeeee...............hhhhhhhhh...eeeee........hhhhhhhhh....hhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhhh......hhhhhhhh.hhhhhhhhhhheeeeeee......hhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PRO_ENDOPEP_SER  PDB: A:605-635----------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a  PDB: A:38-65     ------------------------------Exon 1.5  PDB: A:96-122    Exon 1.6          ------------------------Exon 1.8c  PDB: A:165-205                -----------------------------------------------------Exon 1.10  PDB: A:259-296             ---------------------------------------------Exon 1.13      Exon 1.15  PDB: A:357-392           Exon 1.16              -----------------Exon 1.18  PDB: A:433-474 UniProt: 433-474---------------Exon 1.21b  PDB: A:490-523        ----------------------Exon 1.23  PDB: A:546-611 UniProt: 546-611                        ------------------Exon 1.25  PDB: A:630-663         ---------------------Exon 1.27a  PDB: A:685-70------------------------Exon 1.29b  PDB: A:734-766        Transcript 1 (1)
           Transcript 1 (2) ---------------------------Exon 1.4a  PDB: A:65-95        --------------------------------------------Exon 1.7b  PDB: A:140-164----------------------------------------Exon 1.9  PDB: A:205-258 UniProt: 205-258             -------------------------------------Exon 1.12  PDB: A:296-341 UniProt: 296-341    -------------------------------------------------------------------------Exon 1.17          ----------------------------------------Exon 1.20        --------------------------------Exon 1.22a              ----------------------------------------------------------------Exon 1.24          ---------------------------------Exon 1.26a            ------------------------Exon 1.28  PDB: A:709-733--------------------------------- Transcript 1 (2)
                 3vjm A  38 DSRKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLP 766
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757

Chain B from PDB  Type:PROTEIN  Length:729
 aligned with DPP4_HUMAN | P27487 from UniProtKB/Swiss-Prot  Length:766

    Alignment length:729
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757         
           DPP4_HUMAN    38 DSRKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLP 766
               SCOP domains d3vjmb1 B:38-508 Dipeptidyl peptidase IV/CD26, N-terminal domain                                                                                                                                                                                                                                                                                                                                                                                                                       d3vjmb2 B:509-766 Dipeptidyl peptidase IV/CD26, C-terminal domain                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhhhh.........eee....eeeeee..eeeeee.....eeeee.............eeee.....eeeeeeeeee.....eeeeeeeee....ee...........eeee......eeeee..eeeee.......ee.........eee...hhhhhhhh......eee.....eeeeeeee.....eeeeee.........eeeeee.........eeeeeeee...........eee...hhhhhh..eeeeeeee....eeeeeeee....eeeeeeeeee....eeee.hhhheeee..............ee.....eeeeeee.....eeeeeee......ee.......eeeeeee...eeeeee.hhhhh....eeeeee......eee............eeeee.....eeeeee......eeeeee....eeeeeee.hhhhhhhhh.ee..eeeeeeeee..eeeeeeeee.........eeeeeee...............hhhhhhhhh...eeeee........hhhhhhhhh....hhhhhhhhhhhhhhhh...eeeeeeeeeeehhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhhh......hhhhhhhh.hhhhhhhhhhheeeeeee......hhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PRO_ENDOPEP_SER  PDB: B:605-635----------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a  PDB: B:38-65     ------------------------------Exon 1.5  PDB: B:96-122    Exon 1.6          ------------------------Exon 1.8c  PDB: B:165-205                -----------------------------------------------------Exon 1.10  PDB: B:259-296             ---------------------------------------------Exon 1.13      Exon 1.15  PDB: B:357-392           Exon 1.16              -----------------Exon 1.18  PDB: B:433-474 UniProt: 433-474---------------Exon 1.21b  PDB: B:490-523        ----------------------Exon 1.23  PDB: B:546-611 UniProt: 546-611                        ------------------Exon 1.25  PDB: B:630-663         ---------------------Exon 1.27a  PDB: B:685-70------------------------Exon 1.29b  PDB: B:734-766        Transcript 1 (1)
           Transcript 1 (2) ---------------------------Exon 1.4a  PDB: B:65-95        --------------------------------------------Exon 1.7b  PDB: B:140-164----------------------------------------Exon 1.9  PDB: B:205-258 UniProt: 205-258             -------------------------------------Exon 1.12  PDB: B:296-341 UniProt: 296-341    -------------------------------------------------------------------------Exon 1.17          ----------------------------------------Exon 1.20        --------------------------------Exon 1.22a              ----------------------------------------------------------------Exon 1.24          ---------------------------------Exon 1.26a            ------------------------Exon 1.28  PDB: B:709-733--------------------------------- Transcript 1 (2)
                 3vjm B  38 DSRKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFSLP 766
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 3VJM)

(no "Pfam Domain" information available for 3VJM)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (DPP4_HUMAN | P27487)

molecular function
	GO:0004177	aminopeptidase activity	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain.
	GO:0008239	dipeptidyl-peptidase activity	Catalysis of the hydrolysis of N-terminal dipeptides from a polypeptide chain.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0002020	protease binding	Interacting selectively and non-covalently with any protease or peptidase.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0005102	receptor binding	Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0001618	virus receptor activity	Combining with a virus component and mediating entry of the virus into the cell.
biological process
	GO:0042110	T cell activation	The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific.
	GO:0031295	T cell costimulation	The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation.
	GO:0001662	behavioral fear response	An acute behavioral change resulting from a perceived external threat.
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
	GO:0043542	endothelial cell migration	The orderly movement of an endothelial cell into the extracellular matrix to form an endothelium.
	GO:0035641	locomotory exploration behavior	The specific movement from place to place of an organism in response to a novel environment.
	GO:0010716	negative regulation of extracellular matrix disassembly	Any process that decreases the rate, frequency or extent of extracellular matrix disassembly. Extracellular matrix disassembly is a process that results in the breakdown of the extracellular matrix.
	GO:0008284	positive regulation of cell proliferation	Any process that activates or increases the rate or extent of cell proliferation.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0036343	psychomotor behavior	The specific behavior of an organism that combines cognitive functions and physical movement. For example, driving a car, throwing a ball, or playing a musical instrument.
	GO:0033632	regulation of cell-cell adhesion mediated by integrin	Any process that modulates the frequency, rate, or extent of cell-cell adhesion mediated by integrin.
	GO:0001666	response to hypoxia	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
cellular component
	GO:0016324	apical plasma membrane	The region of the plasma membrane located at the apical end of the cell.
	GO:0030054	cell junction	A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
	GO:0042995	cell projection	A prolongation or process extending from a cell, e.g. a flagellum or axon.
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0030139	endocytic vesicle	A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance. Endocytic vesicles fuse with early endosomes to deliver the cargo for further sorting.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005925	focal adhesion	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0046581	intercellular canaliculus	An extremely narrow tubular channel located between adjacent cells. An instance of this is the secretory canaliculi occurring between adjacent parietal cells in the gastric mucosa of vertebrates.
	GO:0071438	invadopodium membrane	The portion of the plasma membrane surrounding an invadopodium.
	GO:0030027	lamellipodium	A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments.
	GO:0031258	lamellipodium membrane	The portion of the plasma membrane surrounding a lamellipodium.
	GO:0005765	lysosomal membrane	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0045121	membrane raft	Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		W61	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Gly A:474 - Pro A:475	[ RasMol ]
		Gly B:474 - Pro B:475	[ RasMol ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3vjm
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	DPP4_HUMAN \| P27487
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	3.4.14.5
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	DPP4_HUMAN \| P27487
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 19)

Sites (19, 19)

SS Bonds (10, 10)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (24, 48)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (42, 42)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File