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(-) Description

Title :  MUTANT RIBOSOMAL PROTEIN L1 FROM THERMUS THERMOPHILUS WITH THREONINE 217 REPLACED BY VALINE
 
Authors :  A. G. Gabdulkhakov, N. A. Nevskaya, S. V. Tishchenko, S. V. Nikonov
Date :  23 Sep 14  (Deposition) - 18 Mar 15  (Release) - 01 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Rossmann Fold, Ribosomal Protein, Rna Binding Protein, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Tishchenko, O. Kostareva, A. Gabdulkhakov, A. Mikhaylina, E. Nikonova, N. Nevskaya, A. Sarskikh, W. Piendl, M. Garber, S. Nikono
Protein-Rna Affinity Of Ribosomal Protein L1 Mutants Does Not Correlate With The Number Of Intermolecular Interactions.
Acta Crystallogr. , Sect. D V. 71 376 2015
PubMed-ID: 25664749  |  Reference-DOI: 10.1107/S1399004714026248

(-) Compounds

Molecule 1 - 50S RIBOSOMAL PROTEIN L1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A-PL/TTHL1T217V
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET11A-PL
    Gene: RPLA, RPL1
    Mutation: YES
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1GLY3Mod. Amino AcidGLYCINE
2MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3SO44Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:18 , GLY A:60 , THR A:61 , HIS A:199 , HOH A:476BINDING SITE FOR RESIDUE SO4 A 301
2AC2SOFTWAREGLU A:88 , LYS A:141 , ARG A:164 , ASP A:166 , LYS A:167 , HOH A:456 , HOH A:472 , HOH A:534BINDING SITE FOR RESIDUE SO4 A 302
3AC3SOFTWAREARG A:53 , LYS A:79 , GLY A:80 , ILE A:83 , GLU A:98 , HOH A:443 , HOH A:513BINDING SITE FOR RESIDUE SO4 A 303
4AC4SOFTWAREPRO A:65 , HIS A:66 , GLY A:67 , GLN A:71 , LYS A:184 , HOH A:504BINDING SITE FOR RESIDUE SO4 A 304
5AC5SOFTWAREGLY A:67 , VAL A:72 , GLY A:176 , LYS A:177 , HOH A:480BINDING SITE FOR RESIDUE MPD A 305
6AC6SOFTWAREARG A:52 , GLY A:90 , LYS A:167 , HOH A:441 , HOH A:507BINDING SITE FOR RESIDUE MPD A 306
7AC7SOFTWAREGLU A:197 , LYS A:200 , THR A:207 , PHE A:208 , LEU A:209BINDING SITE FOR RESIDUE GLY A 307
8AC8SOFTWARETHR A:34 , ALA A:35 , ARG A:73BINDING SITE FOR RESIDUE GLY A 308
9AC9SOFTWAREPRO A:51 , ARG A:52 , SER A:54 , ASN A:57 , TYR A:93 , HOH A:440BINDING SITE FOR RESIDUE GLY A 309

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4REO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4REO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4REO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.......hhhhhhhhhhhhh......eeeeeeee.....hhhhh.eeeee..........eeee..hhhhhhhhhh...eee..hhhhhhhh......eeee...hhhhhhhhhhhhhhhhh...hhhhh....hhhhhhhhhhh.eeeee.....eeeeeeee...hhhhhhhhhhhhhhhhhhh.........eeeeeee......ee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4reo A   8 RALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHSGGG 309
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227||  
                                                                                                                                                                                                                                                      228|  
                                                                                                                                                                                                                                                       307
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4REO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4REO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4REO)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RL1_THETH | P27150: 1ad2 1eg0 1zho 2hw8 2oum 2ov7 2vpl 3tg8 3u4m 3u56 3umy 487d 4f9t 4qg3 4qgb 4qvi 5ib7 5ib8 5ibb 5imq 5imr 5j8b

(-) Related Entries Specified in the PDB File

1ad2 RIBOSOMAL PROTEIN L1 MUTANT WITH SERINE 179 REPLACED BY CYSTEINE
3tg8 MUTANT RIBOSOMAL PROTEIN L1 LACKING ALA158 FROM THERMUS THERMOPHILUS