3U1A - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   N-TERMINAL 81-AA FRAGMENT OF SMOOTH MUSCLE TROPOMYOSIN ALPHA

Authors :   N. Jampani, R. Dominguez

Date :   29 Sep 11 (Deposition) - 23 Nov 11 (Release) - 04 Sep 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A (1x),B (1x),C (1x),D (1x)

Keywords :   Muscle Contraction, Actin, Contractile Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. N. Rao, R. Rivera-Santiago, X. E. Li, W. Lehman, R. Dominguez
Structural Analysis Of Smooth Muscle Tropomyosin Alpha And Beta Isoforms.
J. Biol. Chem. V. 287 3165 2012
PubMed-ID: 22119916 | Reference-DOI: 10.1074/JBC.M111.307330

Molecule 1 - SMOOTH MUSCLE TROPOMYOSIN ALPHA
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTYB12
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 1-81
	Organism Common	:	BANTAM,CHICKENS
	Organism Scientific	:	GALLUS GALLUS
	Organism Taxid	:	9031

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3U1A)

(no "Site" information available for 3U1A)

(no "SS Bond" information available for 3U1A)

(no "Cis Peptide Bond" information available for 3U1A)

(no "SAP(SNP)/Variant" information available for 3U1A)

(no "PROSITE Motif" information available for 3U1A)

Asymmetric Unit (3, 11)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1d	ENSGALT00000005572	1d	ENSGALE00000035748	chr10:5126807-5126694	114	TPM1_CHICK	1-38	38	4	A:1-38 B:1-38 C:1-38 D:1-38	38 38 38 38
1.3	ENSGALT00000005572	3	ENSGALE00000035746	chr10:5125697-5125572	126	TPM1_CHICK	39-80	42	4	A:39-80 B:39-80 C:39-80 D:39-79	42 42 42 41
1.6	ENSGALT00000005572	6	ENSGALE00000261249	chr10:5119184-5119051	134	TPM1_CHICK	81-125	45	3	A:81-81 B:81-81 C:81-81 -	1 1 1 -
1.7	ENSGALT00000005572	7	ENSGALE00000035741	chr10:5117763-5117646	118	TPM1_CHICK	125-164	40	0	-	-
1.8	ENSGALT00000005572	8	ENSGALE00000035743	chr10:5117525-5117455	71	TPM1_CHICK	165-188	24	0	-	-
1.10	ENSGALT00000005572	10	ENSGALE00000035749	chr10:5116647-5116572	76	TPM1_CHICK	188-213	26	0	-	-
1.11	ENSGALT00000005572	11	ENSGALE00000035745	chr10:5116155-5116093	63	TPM1_CHICK	214-234	21	0	-	-
1.12	ENSGALT00000005572	12	ENSGALE00000261199	chr10:5115818-5115749	70	TPM1_CHICK	235-258	24	0	-	-
1.13b	ENSGALT00000005572	13b	ENSGALE00000145267	chr10:5114603-5114519	85	TPM1_CHICK	258-284	27	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:82
 aligned with TPM1_CHICK | P04268 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:82
                             1                                                                                
                             |       9        19        29        39        49        59        69        79  
            TPM1_CHICK    - -MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATDA 81
               SCOP domains d3u1aa_ A: automated matches                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
               Transcript 1 -Exon 1.1d  PDB: A:1-38 UniProt: 1-38  Exon 1.3  PDB: A:39-80 UniProt: 39-80     1 Transcript 1
                  3u1a A  0 HMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 81
                                     9        19        29        39        49        59        69        79

Chain B from PDB  Type:PROTEIN  Length:84
 aligned with TPM1_CHICK | P04268 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:84
                               1                                                                                
                               |     7        17        27        37        47        57        67        77    
            TPM1_CHICK    - ---MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATDA 81
               SCOP domains d3u1ab_ B: automated matches                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
               Transcript 1 ---Exon 1.1d  PDB: B:1-38 UniProt: 1-38  Exon 1.3  PDB: B:39-80 UniProt: 39-80     1 Transcript 1
                  3u1a B -2 AGHMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 81
                                     7        17        27        37        47        57        67        77

Chain C from PDB  Type:PROTEIN  Length:84
 aligned with TPM1_CHICK | P04268 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:84
                               1                                                                                
                               |     7        17        27        37        47        57        67        77    
            TPM1_CHICK    - ---MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATDA 81
               SCOP domains d3u1ac_ C: automated matches                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
               Transcript 1 ---Exon 1.1d  PDB: C:1-38 UniProt: 1-38  Exon 1.3  PDB: C:39-80 UniProt: 39-80     1 Transcript 1
                  3u1a C -2 AGHMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 81
                                     7        17        27        37        47        57        67        77

Chain D from PDB  Type:PROTEIN  Length:80
 aligned with TPM1_CHICK | P04268 from UniProtKB/Swiss-Prot  Length:284

    Alignment length:80
                             1                                                                              
                             |       9        19        29        39        49        59        69        79
            TPM1_CHICK    - -MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKAT 79
               SCOP domains d3u1ad_ D: automated matches                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
               Transcript 1 -Exon 1.1d  PDB: D:1-38 UniProt: 1-38  Exon 1.3  PDB: D:39-79 UniProt: 39-80     Transcript 1
                  3u1a D  0 HMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 79
                                     9        19        29        39        49        59        69        79

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Coiled coil proteins (689)

Fold: Parallel coiled-coil (407)

Superfamily: Tropomyosin (10)

Family: automated matches (1)

Protein domain: automated matches (1)

Chicken (Gallus gallus) [TaxId: 9031] (1)

1a	d3u1aa_	A:
1b	d3u1ab_	B:
1c	d3u1ac_	C:
1d	d3u1ad_	D:

(no "CATH Domain" information available for 3U1A)

(no "Pfam Domain" information available for 3U1A)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (TPM1_CHICK | P04268)

molecular function
	GO:0003779	actin binding	Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.

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	3u1a
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	TPM1_CHICK \| P04268
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	TPM1_CHICK \| P04268	:	1ic2 3mtu 3mud 3u1c

Description

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Ligands, Modified Residues, Ions (0, 0)

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Exons (3, 11)

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