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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE COMPLEX OF STREPTOCOCCUS AGALACTIAE SORTASE C1 AND MTSET
 
Authors :  B. Khare
Date :  05 Aug 11  (Deposition) - 26 Oct 11  (Release) - 21 Dec 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Beta-Barrel, Pili-Biogenesis, 2-(Trimethylammonium)-Ethyl- Methanethiosulfonate Bromide, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Khare, Z. Q. Fu, I. H. Huang, H. Ton-That, S. V. Narayana
The Crystal Structure Analysis Of Group B Streptococcus Sortase C1: A Model For The "Lid" Movement Upon Substrate Binding.
J. Mol. Biol. V. 414 563 2011
PubMed-ID: 22033482  |  Reference-DOI: 10.1016/J.JMB.2011.10.017

(-) Compounds

Molecule 1 - SORTASE FAMILY PROTEIN
    Chains: A, B, C, D, E, F
    EC Number: 3.4.22.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: XL1BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 43-260
    Gene: SAG0647
    Organism Scientific: STREPTOCOCCUS AGALACTIAE SEROGROUP V
    Organism Taxid: 216466
    Strain: SAG 2603V/R
    Synonym: SORTASE C1, PILUS-SPECIFIC SORTASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2ETM6Ligand/Ion2-(TRIMETHYLAMMONIUM)ETHYL THIOL
3SO45Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ETM1Ligand/Ion2-(TRIMETHYLAMMONIUM)ETHYL THIOL
3SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ETM1Ligand/Ion2-(TRIMETHYLAMMONIUM)ETHYL THIOL
3SO42Ligand/IonSULFATE ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ETM1Ligand/Ion2-(TRIMETHYLAMMONIUM)ETHYL THIOL
3SO41Ligand/IonSULFATE ION
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ETM1Ligand/Ion2-(TRIMETHYLAMMONIUM)ETHYL THIOL
3SO41Ligand/IonSULFATE ION
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ETM1Ligand/Ion2-(TRIMETHYLAMMONIUM)ETHYL THIOL
3SO4-1Ligand/IonSULFATE ION
Biological Unit 6 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ETM1Ligand/Ion2-(TRIMETHYLAMMONIUM)ETHYL THIOL
3SO41Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:51 , CYS A:184 , ASN A:190BINDING SITE FOR RESIDUE ETM A 422
02AC2SOFTWARETYR B:51 , CYS B:184 , ASN B:190 , ARG B:193BINDING SITE FOR RESIDUE ETM B 422
03AC3SOFTWAREARG B:123 , ASP B:135 , THR B:185 , PRO B:186 , TYR B:187BINDING SITE FOR RESIDUE SO4 B 220
04AC4SOFTWAREPRO B:79 , ARG B:142 , TYR B:144BINDING SITE FOR RESIDUE SO4 B 221
05AC5SOFTWARELYS C:129BINDING SITE FOR RESIDUE CL C 220
06AC6SOFTWAREHIS C:122 , CYS C:184BINDING SITE FOR RESIDUE ETM C 422
07AC7SOFTWAREPRO C:202 , TYR C:203 , HOH C:226BINDING SITE FOR RESIDUE SO4 C 221
08AC8SOFTWARECYS D:184 , ARG D:193BINDING SITE FOR RESIDUE ETM D 422
09AC9SOFTWAREARG D:123 , ASP D:135 , THR D:185 , PRO D:186 , TYR D:187BINDING SITE FOR RESIDUE SO4 D 220
10BC1SOFTWAREHIS E:122 , CYS E:184 , ASN E:190BINDING SITE FOR RESIDUE ETM E 422
11BC2SOFTWARECYS F:184BINDING SITE FOR RESIDUE ETM F 422
12BC3SOFTWAREARG F:123 , ASP F:135 , THR F:185 , PRO F:186 , TYR F:187BINDING SITE FOR RESIDUE SO4 F 220

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TBE)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Thr A:185 -Pro A:186
2Thr B:185 -Pro B:186
3Thr C:185 -Pro C:186
4Thr D:185 -Pro D:186
5Thr E:185 -Pro E:186
6Thr F:185 -Pro F:186

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TBE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TBE)

(-) Exons   (0, 0)

(no "Exon" information available for 3TBE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:194
 aligned with Q8E0S7_STRA5 | Q8E0S7 from UniProtKB/TrEMBL  Length:305

    Alignment length:209
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243         
         Q8E0S7_STRA5    44 HANINAFKEAVTKIDRVEINRRLELAYAYNASIAGAKTNGEYPALKDPYSAEQKQAGVVEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVEKTVQKD 252
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.hhhhhhhhhhhhhhhhh....-------........--------...hhhhh.....eeeeehhhheeeeeee..hhhhhh..eee............eeeeee........hhhhhhhhh....eeeeee..eeeeeeeeeeeee....hhhhh.....eeeeeeeee......eeeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tbe A   3 HANINAFKEAVTKIDRVEINRRLELAYAYNASIAG-------PALKDPYS--------VEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVEKTVQKD 211
                                    12        22        32    |    -  |     52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202         
                                                             37      45     52       61                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:193
 aligned with Q8E0S7_STRA5 | Q8E0S7 from UniProtKB/TrEMBL  Length:305

    Alignment length:201
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245 
         Q8E0S7_STRA5    46 NINAFKEAVTKIDRVEINRRLELAYAYNASIAGAKTNGEYPALKDPYSAEQKQAGVVEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVE 246
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhhhhhhhhh......-----.......--.....-....hhhhh.....eeee.hhhh.eeeee...........eee............eeeeee............hhhhh....eeeeee..eeeeeeeeeeeee....hhhhh.....eeeeeeeee......eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tbe B   5 NINAFKEAVTKIDRVEINRRLELAYAYNASIAGAK-----PALKDPY--EQKQA-VVEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVE 205
                                    14        24        34    |    -|     | 54   | |  64        74        84        94       104       114       124       134       144       154       164       174       184       194       204 
                                                             39    45    51 54  58 |                                                                                                                                                 
                                                                                  60                                                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:189
 aligned with Q8E0S7_STRA5 | Q8E0S7 from UniProtKB/TrEMBL  Length:305

    Alignment length:203
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245   
         Q8E0S7_STRA5    46 NINAFKEAVTKIDRVEINRRLELAYAYNASIAGAKTNGEYPALKDPYSAEQKQAGVVEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVEKT 248
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.------.......--------...hhhhh.....eeeee....eeeeeee..hhhhhh..eee.............eeeee............hhhhh....eeeeee..eeeeeeeeeeeee....hhhhh......eeeeeeee......eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tbe C   5 NINAFKEAVTKIDRVEINRRLELAYAYNASIAGAK------ALKDPYS--------VEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVEKT 207
                                    14        24        34    |    - |     | -      | 64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
                                                             39     46    52       61                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:193
 aligned with Q8E0S7_STRA5 | Q8E0S7 from UniProtKB/TrEMBL  Length:305

    Alignment length:204
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244    
         Q8E0S7_STRA5    45 ANINAFKEAVTKIDRVEINRRLELAYAYNASIAGAKTNGEYPALKDPYSAEQKQAGVVEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVEKT 248
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh------.......---...--....hhhhh.....eeeee....eeeeee...hhhhhh..eee............eeeeee........hhhhhhhhh....eeeeee..eeeeeeeeeeeee....hhhhh.....eeeeeeeee......eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3tbe D   4 ANINAFKEAVTKIDRVEINRRLELAYAYNASIAGA------PALKDPY---QKQ--VVEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVEKT 207
                                    13        23        33    |    - |     | - | |  | 63        73        83        93       103       113       123       133       143       153       163       173       183       193       203    
                                                             38     45    51  55 | 60                                                                                                                                                   
                                                                                57                                                                                                                                                      


Chain E from PDB  Type:PROTEIN  Length:193
 aligned with Q8E0S7_STRA5 | Q8E0S7 from UniProtKB/TrEMBL  Length:305

    Alignment length:205
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243     
         Q8E0S7_STRA5    44 HANINAFKEAVTKIDRVEINRRLELAYAYNASIAGAKTNGEYPALKDPYSAEQKQAGVVEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVEKT 248
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..------...hhhhh.------...hhhhh.....eeeeehhhheeeeee...........eee............eeeeee............hhhhh....eeeeee..eeeeeeeeeeeee....hhhhh.....eeeeeeeee......eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tbe E   3 HANINAFKEAVTKIDRVEINRRLELAYAYNASIAGAK------ALKDPYSAE------VEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVEKT 207
                                    12        22        32      |  -   |    52 |      62        72        82        92       102       112       122       132       142       152       162       172       182       192       202     
                                                               39     46      54     61                                                                                                                                                  


Chain F from PDB  Type:PROTEIN  Length:188
 aligned with Q8E0S7_STRA5 | Q8E0S7 from UniProtKB/TrEMBL  Length:305

    Alignment length:201
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246 
         Q8E0S7_STRA5    47 INAFKEAVTKIDRVEINRRLELAYAYNASIAGAKTNGEYPALKDPYSAEQKQAGVVEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVEK 247
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..----.......---------...hhhhh.....eeeeehhhheeeeee.....hhhhh.eee............eeeeee............hhhhh....eeeeee..eeeeeeeeeeeee....hhhhh.....eeeeeeeee......eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tbe F   6 INAFKEAVTKIDRVEINRRLELAYAYNASIAGAKT----PALKDPY---------VEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVEK 206
                                    15        25        35    |   45     |   -     |  65        75        85        95       105       115       125       135       145       155       165       175       185       195       205 
                                                             40   45    51        61
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TBE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TBE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TBE)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q8E0S7_STRA5 | Q8E0S7)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  3tbe
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  Q8E0S7_STRA5 | Q8E0S7
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  3.4.22.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8E0S7_STRA5 | Q8E0S7: 3rbi 3rbj 3rbk 3tb7 4g1j

(-) Related Entries Specified in the PDB File

3tb7 THE TYPE I CRYSTAL STRUCTURE OF STREPTOCOCCUS AGALACTIAE SORTASE C1