3T88 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF ESCHERICHIA COLI MENB IN COMPLEX WITH SUBSTRATE ANALOGUE, OSB-NCOA

Authors :   H-J. Li, X. Li, N. Liu, H. Zhang, J. Truglio, S. Mishra, C. Kisker, M. Garc P. Tonge

Date :   01 Aug 11 (Deposition) - 24 Aug 11 (Release) - 16 Nov 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Crotonase Superfamily, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. J. Li, X. Li, N. Liu, H. Zhang, J. J. Truglio, S. Mishra, C. Kisker, M. Garcia-Diaz, P. J. Tonge
Mechanism Of The Intramolecular Claisen Condensation Reaction Catalyzed By Menb, A Crotonase Superfamily Member.
Biochemistry V. 50 9532 2011
PubMed-ID: 21830810 | Reference-DOI: 10.1021/BI200877X

Molecule 1 - 1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	4.1.3.36
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-15B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	B2262
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	MENB, DHNA-COA SYNTHASE

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 24)

No.	Name	Count	Type	Full Name
1	CL	6	Ligand/Ion	CHLORIDE ION
2	GOL	6	Ligand/Ion	GLYCEROL
3	PGE	6	Ligand/Ion	TRIETHYLENE GLYCOL
4	S0N	6	Ligand/Ion	O-SUCCINYLBENZOYL-N-COENZYME A

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:43 , VAL A:44 , ARG A:45 , ALA A:47 , PHE A:48 , SER A:84 , GLY A:85 , GLY A:86 , ASP A:87 , GLN A:88 , LYS A:89 , TYR A:97 , LEU A:106 , VAL A:108 , LEU A:109 , TYR A:129 , ILE A:131 , GLY A:133 , THR A:155 , VAL A:159 , SER A:161 , PHE A:162 , ASP A:163 , GLN A:189 , HOH A:1190 , HOH A:1196 , TYR E:258 , PHE E:270 , LYS E:273	BINDING SITE FOR RESIDUE S0N A 300
02	AC2	SOFTWARE	GLY A:132 , GLN A:154 , THR A:155 , GLY A:156 , TRP A:184 , HOH A:1190	BINDING SITE FOR RESIDUE CL A 301
03	AC3	SOFTWARE	LYS A:54 , HIS A:105 , TYR E:65	BINDING SITE FOR RESIDUE PGE A 302
04	AC4	SOFTWARE	THR A:203 , GLU A:213 , ARG A:216 , TRP A:217 , ARG C:188	BINDING SITE FOR RESIDUE GOL A 303
05	AC5	SOFTWARE	GLN B:43 , VAL B:44 , ARG B:45 , ALA B:47 , PHE B:48 , SER B:84 , GLY B:85 , GLY B:86 , ASP B:87 , GLN B:88 , LYS B:89 , TYR B:97 , VAL B:108 , LEU B:109 , TYR B:129 , ILE B:131 , GLY B:133 , THR B:155 , VAL B:159 , SER B:161 , PHE B:162 , ASP B:163 , GLN B:189 , HOH B:326 , HOH B:513 , HOH B:1191 , LYS D:280 , TYR F:258 , PHE F:270 , LYS F:273	BINDING SITE FOR RESIDUE S0N B 400
06	AC6	SOFTWARE	GLY B:132 , GLN B:154 , THR B:155 , GLY B:156 , TRP B:184 , HOH B:1191	BINDING SITE FOR RESIDUE CL B 401
07	AC7	SOFTWARE	LYS B:54 , HIS B:105 , TYR F:65	BINDING SITE FOR RESIDUE PGE B 402
08	AC8	SOFTWARE	ARG A:188 , THR B:203 , VAL B:205 , GLU B:213 , ARG B:216 , TRP B:217	BINDING SITE FOR RESIDUE GOL B 403
09	AC9	SOFTWARE	GLN C:43 , VAL C:44 , ARG C:45 , ALA C:47 , SER C:84 , GLY C:85 , GLY C:86 , ASP C:87 , GLN C:88 , LYS C:89 , TYR C:97 , VAL C:108 , LEU C:109 , TYR C:129 , ILE C:131 , GLY C:133 , THR C:155 , VAL C:159 , SER C:161 , PHE C:162 , GLN C:189 , HOH C:288 , HOH C:505 , HOH C:648 , HOH C:1192 , TYR D:258 , PHE D:270 , LYS D:273	BINDING SITE FOR RESIDUE S0N C 500
10	BC1	SOFTWARE	GLY C:132 , GLN C:154 , THR C:155 , GLY C:156 , TRP C:184 , HOH C:1192	BINDING SITE FOR RESIDUE CL C 501
11	BC2	SOFTWARE	LYS C:54 , HIS C:105 , HOH C:311 , HOH C:1131	BINDING SITE FOR RESIDUE PGE C 502
12	BC3	SOFTWARE	ARG B:188 , THR C:203 , VAL C:205 , GLU C:213 , ARG C:216 , TRP C:217	BINDING SITE FOR RESIDUE GOL C 503
13	BC4	SOFTWARE	TYR C:258 , PHE C:270 , GLN D:43 , VAL D:44 , ARG D:45 , ALA D:47 , PHE D:48 , SER D:84 , GLY D:85 , GLY D:86 , ASP D:87 , GLN D:88 , LYS D:89 , TYR D:97 , VAL D:108 , LEU D:109 , TYR D:129 , ILE D:131 , GLY D:132 , GLY D:133 , THR D:155 , VAL D:159 , SER D:161 , PHE D:162 , ASP D:163 , GLN D:189 , HOH D:766 , HOH D:914 , HOH D:1193	BINDING SITE FOR RESIDUE S0N D 600
14	BC5	SOFTWARE	GLY D:132 , GLN D:154 , THR D:155 , GLY D:156 , TRP D:184 , HOH D:1193	BINDING SITE FOR RESIDUE CL D 601
15	BC6	SOFTWARE	TYR C:65 , LYS D:54 , HIS D:105 , ASN D:107	BINDING SITE FOR RESIDUE PGE D 602
16	BC7	SOFTWARE	THR D:203 , VAL D:205 , GLU D:213 , ARG D:216 , TRP D:217 , HOH D:683 , ARG E:188	BINDING SITE FOR RESIDUE GOL D 603
17	BC8	SOFTWARE	TYR A:258 , PHE A:270 , LYS A:273 , GLN E:43 , VAL E:44 , ARG E:45 , ALA E:47 , PHE E:48 , SER E:84 , GLY E:85 , GLY E:86 , ASP E:87 , GLN E:88 , LYS E:89 , TYR E:97 , LEU E:106 , VAL E:108 , LEU E:109 , TYR E:129 , ILE E:131 , GLY E:133 , THR E:155 , VAL E:159 , SER E:161 , PHE E:162 , ASP E:163 , GLN E:189 , HOH E:321 , HOH E:473 , HOH E:1194	BINDING SITE FOR RESIDUE S0N E 700
18	BC9	SOFTWARE	GLY E:132 , GLN E:154 , THR E:155 , GLY E:156 , TRP E:184 , HOH E:1194	BINDING SITE FOR RESIDUE CL E 701
19	CC1	SOFTWARE	LYS E:54 , HIS E:105 , HOH E:312 , HOH E:1208	BINDING SITE FOR RESIDUE PGE E 702
20	CC2	SOFTWARE	THR E:203 , VAL E:205 , GLU E:213 , ARG E:216 , TRP E:217 , ARG F:188	BINDING SITE FOR RESIDUE GOL E 703
21	CC3	SOFTWARE	TYR B:258 , PHE B:270 , LYS B:273 , GLN F:43 , VAL F:44 , ARG F:45 , ALA F:47 , PHE F:48 , SER F:84 , GLY F:85 , GLY F:86 , ASP F:87 , GLN F:88 , LYS F:89 , TYR F:97 , VAL F:108 , LEU F:109 , TYR F:129 , ILE F:131 , GLY F:133 , THR F:155 , VAL F:159 , SER F:161 , PHE F:162 , ASP F:163 , GLN F:189 , HOH F:1195	BINDING SITE FOR RESIDUE S0N F 800
22	CC4	SOFTWARE	GLY F:132 , GLN F:154 , THR F:155 , GLY F:156 , TRP F:184 , HOH F:1195	BINDING SITE FOR RESIDUE CL F 801
23	CC5	SOFTWARE	LYS F:54 , HIS F:105	BINDING SITE FOR RESIDUE PGE F 802
24	CC6	SOFTWARE	ARG D:188 , THR F:203 , VAL F:205 , GLU F:213 , ARG F:216 , TRP F:217	BINDING SITE FOR RESIDUE GOL F 803

(no "SS Bond" information available for 3T88)

(no "Cis Peptide Bond" information available for 3T88)

(no "SAP(SNP)/Variant" information available for 3T88)

Asymmetric/Biological Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ENOYL_COA_HYDRATASE	PS00166	Enoyl-CoA hydratase/isomerase signature.	MENB_ECOLI	123-143	6	A:123-143 B:123-143 C:123-143 D:123-143 E:123-143 F:123-143

(no "Exon" information available for 3T88)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:281
 aligned with MENB_ECOLI | P0ABU0 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:281
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 
           MENB_ECOLI     5 DEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
               SCOP domains d3t88a_ A: automated matches                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh....eee.......eeeeee...eeeeee.hhhhh...hhhhhhhhhhhhhhhhhh....eeeeee....eee...hhhhh.....ee.....ee.hhhhhhhhhhhh...eeeee..eeehhhhhhhhhh.eeeee...eee.hhhhhh.......hhhhhhhhhhhhhhhhhhhh..eehhhhhhh....eeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t88 A   5 DEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284

Chain B from PDB  Type:PROTEIN  Length:281
 aligned with MENB_ECOLI | P0ABU0 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:281
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 
           MENB_ECOLI     5 DEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
               SCOP domains d3t88b_ B: automated matches                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh....eee.......eeeeee...eeeeee.hhhhh...hhhhhhhhhhhhhhhhhh....eeeeee....eee...hhh.ee...eee.....ee.hhhhhhhhhhhh...eeeee..eeehhhhhhhhhh.eeeee...eee.hhhhhh.......hhhhhhhhhhhhhhhhhhhh..eehhhhhhh....eeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t88 B   5 DEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284

Chain C from PDB  Type:PROTEIN  Length:281
 aligned with MENB_ECOLI | P0ABU0 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:281
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 
           MENB_ECOLI     5 DEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
               SCOP domains d3t88c_ C: automated matches                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh....eee.......eeeeee...eeeeee.hhhhh...hhhhhhhhhhhhhhhhhh....eeeeee....eee.............ee.....ee.hhhhhhhhhhhh...eeeee..eeehhhhhhhhhh.eeeee...eee.hhhhhh.......hhhhhhhhhhhhhhhhhhhh..eehhhhhhh....eeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t88 C   5 DEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284

Chain D from PDB  Type:PROTEIN  Length:281
 aligned with MENB_ECOLI | P0ABU0 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:281
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 
           MENB_ECOLI     5 DEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
               SCOP domains d3t88d_ D: automated matches                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh....eee.......eeeeee...eeeeee.hhhhh...hhhhhhhhhhhhhhhhhh....eeeeee....eee.............ee.....ee.hhhhhhhhhhh....eeeee..eeehhhhhhhhhh.eeeee...eee.hhhhhh.......hhhhhhhhhhhhhhhhhhhh..eehhhhhhh....eeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t88 D   5 DEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284

Chain E from PDB  Type:PROTEIN  Length:281
 aligned with MENB_ECOLI | P0ABU0 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:281
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 
           MENB_ECOLI     5 DEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
               SCOP domains d3t88e_ E: automated matches                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh....eee.......eeeeee...eeeeee.hhhhh...hhhhhhhhhhhhhhhhhh....eeeeee....eee.............ee.....ee.hhhhhhhhhhhh...eeeee..eeehhhhhhhhhh.eeeee...eee.hhhhhh.......hhhhhhhhhhhhhhhhhhhh...hhhhhhhh....eeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t88 E   5 DEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284

Chain F from PDB  Type:PROTEIN  Length:281
 aligned with MENB_ECOLI | P0ABU0 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:281
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 
           MENB_ECOLI     5 DEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
               SCOP domains d3t88f_ F: automated matches                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh....eee.......eeeeee...eeeeee.hhhhh...hhhhhhhhhhhhhhhhhh....eeeeee....eee.............ee.....ee.hhhhhhhhhhhh...eeeee..eeehhhhhhhhhh.eeeee...eee.hhhhhh.......hhhhhhhhhhhhhhhhhhhh..eehhhhhhhh...eeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------ENOYL_COA_HYDRATASE  ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3t88 F   5 DEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: ClpP/crotonase (207)

Superfamily: ClpP/crotonase (207)

Family: automated matches (96)

Protein domain: automated matches (96)

Escherichia coli [TaxId: 562] (2)

1a	d3t88a_	A:
1b	d3t88b_	B:
1c	d3t88c_	C:
1d	d3t88d_	D:
1e	d3t88e_	E:
1f	d3t88f_	F:

(no "CATH Domain" information available for 3T88)

(no "Pfam Domain" information available for 3T88)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (MENB_ECOLI | P0ABU0)

molecular function
	GO:0008935	1,4-dihydroxy-2-naphthoyl-CoA synthase activity	Catalysis of the reaction: 4-(2-carboxyphenyl)-4-oxobutanoyl-CoA = 1,4-dihydroxy-2-napthoyl-CoA + H2O.
	GO:0071890	bicarbonate binding	Interacting selectively and non-covalently with bicarbonate (CHO3-) ions.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0009234	menaquinone biosynthetic process	The chemical reactions and pathways resulting in the formation of any of the menaquinones. Structurally, menaquinones consist of a methylated naphthoquinone ring structure and side chains composed of a variable number of unsaturated isoprenoid residues. Menaquinones that have vitamin K activity and are known as vitamin K2.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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	Cis Peptide Bonds
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	3t88
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	4.1.3.36
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	MENB_ECOLI \| P0ABU0	:	3t89 4els 4elw 4elx 4i42

3t89	CRYSTAL STRUCTURE OF ESCHERICHIA COLI MENB
3t8a	CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MENB IN COMPLEX WITH SUBSTRATE ANALOGUE, OSB-NCOA
3t8b	CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MENB WITH ALTERED HEXAMERIC ASSEMBLY

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 24)

Sites (24, 24)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 6)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File