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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF ESCHERICHIA COLI MENB IN COMPLEX WITH S ANALOGUE, OSB-NCOA
Keywords CROTONASE SUPERFAMILY, LYASE-LYASE INHIBITOR COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3T88     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE  A 281 2163 0
2  Protein   1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE  B 281 2156 0
3  Protein   1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE  C 281 2158 0
4  Protein   1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE  D 281 2154 0
5  Protein   1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE  E 281 2149 0
6  Protein   1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE  F 281 2147 0
7  Ligand   1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE  A 4 0 80
8  Ligand   1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE  B 4 0 80
9  Ligand   1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE  C 4 0 80
10  Ligand   1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE  D 4 0 80
11  Ligand   1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE  E 4 0 80
12  Ligand   1,4-DIHYDROXY-2-NAPHTHOYL-COA SYNTHASE  F 4 0 80
13 Water     811 0 811
total       2521 12927 1291
Proteins
Unit 1 ASP5 GLU6 ALA7 MET8 LEU9 TYR10 ALA11 PRO12 VAL13 GLU14 TRP15 HIS16 ASP17 CYS18 SER19 GLU20 GLY21 PHE22 GLU23 ASP24 ILE25 ARG26 TYR27 GLU28 LYS29 SER30 THR31 ASP32 GLY33 ILE34 ALA35 LYS36 ILE37 THR38 ILE39 ASN40 ARG41 PRO42 GLN43 VAL44 ARG45 ASN46 ALA47 PHE48 ARG49 PRO50 LEU51 THR52 VAL53 LYS54 GLU55 MET56 ILE57 GLN58 ALA59 LEU60 ALA61 ASP62 ALA63 ARG64 TYR65 ASP66 ASP67 ASN68 ILE69 GLY70 VAL71 ILE72 ILE73 LEU74 THR75 GLY76 ALA77 GLY78 ASP79 LYS80 ALA81 PHE82 CYS83 SER84 GLY85 GLY86 ASP87 GLN88 LYS89 VAL90 ARG91 GLY92 ASP93 TYR94 GLY95 GLY96 TYR97 LYS98 ASP99 ASP100 SER101 GLY102 VAL103 HIS104 HIS105 LEU106 ASN107 VAL108 LEU109 ASP110 PHE111 GLN112 ARG113 GLN114 ILE115 ARG116 THR117 CYS118 PRO119 LYS120 PRO121 VAL122 VAL123 ALA124 MET125 VAL126 ALA127 GLY128 TYR129 SER130 ILE131 GLY132 GLY133 GLY134 HIS135 VAL136 LEU137 HIS138 MET139 MET140 CYS141 ASP142 LEU143 THR144 ILE145 ALA146 ALA147 ASP148 ASN149 ALA150 ILE151 PHE152 GLY153 GLN154 THR155 GLY156 PRO157 LYS158 VAL159 GLY160 SER161 PHE162 ASP163 GLY164 GLY165 TRP166 GLY167 ALA168 SER169 TYR170 MET171 ALA172 ARG173 ILE174 VAL175 GLY176 GLN177 LYS178 LYS179 ALA180 ARG181 GLU182 ILE183 TRP184 PHE185 LEU186 CYS187 ARG188 GLN189 TYR190 ASP191 ALA192 LYS193 GLN194 ALA195 LEU196 ASP197 MET198 GLY199 LEU200 VAL201 ASN202 THR203 VAL204 VAL205 PRO206 LEU207 ALA208 ASP209 LEU210 GLU211 LYS212 GLU213 THR214 VAL215 ARG216 TRP217 CYS218 ARG219 GLU220 MET221 LEU222 GLN223 ASN224 SER225 PRO226 MET227 ALA228 LEU229 ARG230 CYS231 LEU232 LYS233 ALA234 ALA235 LEU236 ASN237 ALA238 ASP239 CYS240 ASP241 GLY242 GLN243 ALA244 GLY245 LEU246 GLN247 GLU248 LEU249 ALA250 GLY251 ASN252 ALA253 THR254 MET255 LEU256 PHE257 TYR258 MET259 THR260 GLU261 GLU262 GLY263 GLN264 GLU265 GLY266 ARG267 ASN268 ALA269 PHE270 ASN271 GLN272 LYS273 ARG274 GLN275 PRO276 ASP277 PHE278 SER279 LYS280 PHE281 LYS282 ARG283 ASN284 PRO285
Unit 2 ASP5 GLU6 ALA7 MET8 LEU9 TYR10 ALA11 PRO12 VAL13 GLU14 TRP15 HIS16 ASP17 CYS18 SER19 GLU20 GLY21 PHE22 GLU23 ASP24 ILE25 ARG26 TYR27 GLU28 LYS29 SER30 THR31 ASP32 GLY33 ILE34 ALA35 LYS36 ILE37 THR38 ILE39 ASN40 ARG41 PRO42 GLN43 VAL44 ARG45 ASN46 ALA47 PHE48 ARG49 PRO50 LEU51 THR52 VAL53 LYS54 GLU55 MET56 ILE57 GLN58 ALA59 LEU60 ALA61 ASP62 ALA63 ARG64 TYR65 ASP66 ASP67 ASN68 ILE69 GLY70 VAL71 ILE72 ILE73 LEU74 THR75 GLY76 ALA77 GLY78 ASP79 LYS80 ALA81 PHE82 CYS83 SER84 GLY85 GLY86 ASP87 GLN88 LYS89 VAL90 ARG91 GLY92 ASP93 TYR94 GLY95 GLY96 TYR97 LYS98 ASP99 ASP100 SER101 GLY102 VAL103 HIS104 HIS105 LEU106 ASN107 VAL108 LEU109 ASP110 PHE111 GLN112 ARG113 GLN114 ILE115 ARG116 THR117 CYS118 PRO119 LYS120 PRO121 VAL122 VAL123 ALA124 MET125 VAL126 ALA127 GLY128 TYR129 SER130 ILE131 GLY132 GLY133 GLY134 HIS135 VAL136 LEU137 HIS138 MET139 MET140 CYS141 ASP142 LEU143 THR144 ILE145 ALA146 ALA147 ASP148 ASN149 ALA150 ILE151 PHE152 GLY153 GLN154 THR155 GLY156 PRO157 LYS158 VAL159 GLY160 SER161 PHE162 ASP163 GLY164 GLY165 TRP166 GLY167 ALA168 SER169 TYR170 MET171 ALA172 ARG173 ILE174 VAL175 GLY176 GLN177 LYS178 LYS179 ALA180 ARG181 GLU182 ILE183 TRP184 PHE185 LEU186 CYS187 ARG188 GLN189 TYR190 ASP191 ALA192 LYS193 GLN194 ALA195 LEU196 ASP197 MET198 GLY199 LEU200 VAL201 ASN202 THR203 VAL204 VAL205 PRO206 LEU207 ALA208 ASP209 LEU210 GLU211 LYS212 GLU213 THR214 VAL215 ARG216 TRP217 CYS218 ARG219 GLU220 MET221 LEU222 GLN223 ASN224 SER225 PRO226 MET227 ALA228 LEU229 ARG230 CYS231 LEU232 LYS233 ALA234 ALA235 LEU236 ASN237 ALA238 ASP239 CYS240 ASP241 GLY242 GLN243 ALA244 GLY245 LEU246 GLN247 GLU248 LEU249 ALA250 GLY251 ASN252 ALA253 THR254 MET255 LEU256 PHE257 TYR258 MET259 THR260 GLU261 GLU262 GLY263 GLN264 GLU265 GLY266 ARG267 ASN268 ALA269 PHE270 ASN271 GLN272 LYS273 ARG274 GLN275 PRO276 ASP277 PHE278 SER279 LYS280 PHE281 LYS282 ARG283 ASN284 PRO285
Unit 3 ASP5 GLU6 ALA7 MET8 LEU9 TYR10 ALA11 PRO12 VAL13 GLU14 TRP15 HIS16 ASP17 CYS18 SER19 GLU20 GLY21 PHE22 GLU23 ASP24 ILE25 ARG26 TYR27 GLU28 LYS29 SER30 THR31 ASP32 GLY33 ILE34 ALA35 LYS36 ILE37 THR38 ILE39 ASN40 ARG41 PRO42 GLN43 VAL44 ARG45 ASN46 ALA47 PHE48 ARG49 PRO50 LEU51 THR52 VAL53 LYS54 GLU55 MET56 ILE57 GLN58 ALA59 LEU60 ALA61 ASP62 ALA63 ARG64 TYR65 ASP66 ASP67 ASN68 ILE69 GLY70 VAL71 ILE72 ILE73 LEU74 THR75 GLY76 ALA77 GLY78 ASP79 LYS80 ALA81 PHE82 CYS83 SER84 GLY85 GLY86 ASP87 GLN88 LYS89 VAL90 ARG91 GLY92 ASP93 TYR94 GLY95 GLY96 TYR97 LYS98 ASP99 ASP100 SER101 GLY102 VAL103 HIS104 HIS105 LEU106 ASN107 VAL108 LEU109 ASP110 PHE111 GLN112 ARG113 GLN114 ILE115 ARG116 THR117 CYS118 PRO119 LYS120 PRO121 VAL122 VAL123 ALA124 MET125 VAL126 ALA127 GLY128 TYR129 SER130 ILE131 GLY132 GLY133 GLY134 HIS135 VAL136 LEU137 HIS138 MET139 MET140 CYS141 ASP142 LEU143 THR144 ILE145 ALA146 ALA147 ASP148 ASN149 ALA150 ILE151 PHE152 GLY153 GLN154 THR155 GLY156 PRO157 LYS158 VAL159 GLY160 SER161 PHE162 ASP163 GLY164 GLY165 TRP166 GLY167 ALA168 SER169 TYR170 MET171 ALA172 ARG173 ILE174 VAL175 GLY176 GLN177 LYS178 LYS179 ALA180 ARG181 GLU182 ILE183 TRP184 PHE185 LEU186 CYS187 ARG188 GLN189 TYR190 ASP191 ALA192 LYS193 GLN194 ALA195 LEU196 ASP197 MET198 GLY199 LEU200 VAL201 ASN202 THR203 VAL204 VAL205 PRO206 LEU207 ALA208 ASP209 LEU210 GLU211 LYS212 GLU213 THR214 VAL215 ARG216 TRP217 CYS218 ARG219 GLU220 MET221 LEU222 GLN223 ASN224 SER225 PRO226 MET227 ALA228 LEU229 ARG230 CYS231 LEU232 LYS233 ALA234 ALA235 LEU236 ASN237 ALA238 ASP239 CYS240 ASP241 GLY242 GLN243 ALA244 GLY245 LEU246 GLN247 GLU248 LEU249 ALA250 GLY251 ASN252 ALA253 THR254 MET255 LEU256 PHE257 TYR258 MET259 THR260 GLU261 GLU262 GLY263 GLN264 GLU265 GLY266 ARG267 ASN268 ALA269 PHE270 ASN271 GLN272 LYS273 ARG274 GLN275 PRO276 ASP277 PHE278 SER279 LYS280 PHE281 LYS282 ARG283 ASN284 PRO285
Unit 4 ASP5 GLU6 ALA7 MET8 LEU9 TYR10 ALA11 PRO12 VAL13 GLU14 TRP15 HIS16 ASP17 CYS18 SER19 GLU20 GLY21 PHE22 GLU23 ASP24 ILE25 ARG26 TYR27 GLU28 LYS29 SER30 THR31 ASP32 GLY33 ILE34 ALA35 LYS36 ILE37 THR38 ILE39 ASN40 ARG41 PRO42 GLN43 VAL44 ARG45 ASN46 ALA47 PHE48 ARG49 PRO50 LEU51 THR52 VAL53 LYS54 GLU55 MET56 ILE57 GLN58 ALA59 LEU60 ALA61 ASP62 ALA63 ARG64 TYR65 ASP66 ASP67 ASN68 ILE69 GLY70 VAL71 ILE72 ILE73 LEU74 THR75 GLY76 ALA77 GLY78 ASP79 LYS80 ALA81 PHE82 CYS83 SER84 GLY85 GLY86 ASP87 GLN88 LYS89 VAL90 ARG91 GLY92 ASP93 TYR94 GLY95 GLY96 TYR97 LYS98 ASP99 ASP100 SER101 GLY102 VAL103 HIS104 HIS105 LEU106 ASN107 VAL108 LEU109 ASP110 PHE111 GLN112 ARG113 GLN114 ILE115 ARG116 THR117 CYS118 PRO119 LYS120 PRO121 VAL122 VAL123 ALA124 MET125 VAL126 ALA127 GLY128 TYR129 SER130 ILE131 GLY132 GLY133 GLY134 HIS135 VAL136 LEU137 HIS138 MET139 MET140 CYS141 ASP142 LEU143 THR144 ILE145 ALA146 ALA147 ASP148 ASN149 ALA150 ILE151 PHE152 GLY153 GLN154 THR155 GLY156 PRO157 LYS158 VAL159 GLY160 SER161 PHE162 ASP163 GLY164 GLY165 TRP166 GLY167 ALA168 SER169 TYR170 MET171 ALA172 ARG173 ILE174 VAL175 GLY176 GLN177 LYS178 LYS179 ALA180 ARG181 GLU182 ILE183 TRP184 PHE185 LEU186 CYS187 ARG188 GLN189 TYR190 ASP191 ALA192 LYS193 GLN194 ALA195 LEU196 ASP197 MET198 GLY199 LEU200 VAL201 ASN202 THR203 VAL204 VAL205 PRO206 LEU207 ALA208 ASP209 LEU210 GLU211 LYS212 GLU213 THR214 VAL215 ARG216 TRP217 CYS218 ARG219 GLU220 MET221 LEU222 GLN223 ASN224 SER225 PRO226 MET227 ALA228 LEU229 ARG230 CYS231 LEU232 LYS233 ALA234 ALA235 LEU236 ASN237 ALA238 ASP239 CYS240 ASP241 GLY242 GLN243 ALA244 GLY245 LEU246 GLN247 GLU248 LEU249 ALA250 GLY251 ASN252 ALA253 THR254 MET255 LEU256 PHE257 TYR258 MET259 THR260 GLU261 GLU262 GLY263 GLN264 GLU265 GLY266 ARG267 ASN268 ALA269 PHE270 ASN271 GLN272 LYS273 ARG274 GLN275 PRO276 ASP277 PHE278 SER279 LYS280 PHE281 LYS282 ARG283 ASN284 PRO285
Unit 5 ASP5 GLU6 ALA7 MET8 LEU9 TYR10 ALA11 PRO12 VAL13 GLU14 TRP15 HIS16 ASP17 CYS18 SER19 GLU20 GLY21 PHE22 GLU23 ASP24 ILE25 ARG26 TYR27 GLU28 LYS29 SER30 THR31 ASP32 GLY33 ILE34 ALA35 LYS36 ILE37 THR38 ILE39 ASN40 ARG41 PRO42 GLN43 VAL44 ARG45 ASN46 ALA47 PHE48 ARG49 PRO50 LEU51 THR52 VAL53 LYS54 GLU55 MET56 ILE57 GLN58 ALA59 LEU60 ALA61 ASP62 ALA63 ARG64 TYR65 ASP66 ASP67 ASN68 ILE69 GLY70 VAL71 ILE72 ILE73 LEU74 THR75 GLY76 ALA77 GLY78 ASP79 LYS80 ALA81 PHE82 CYS83 SER84 GLY85 GLY86 ASP87 GLN88 LYS89 VAL90 ARG91 GLY92 ASP93 TYR94 GLY95 GLY96 TYR97 LYS98 ASP99 ASP100 SER101 GLY102 VAL103 HIS104 HIS105 LEU106 ASN107 VAL108 LEU109 ASP110 PHE111 GLN112 ARG113 GLN114 ILE115 ARG116 THR117 CYS118 PRO119 LYS120 PRO121 VAL122 VAL123 ALA124 MET125 VAL126 ALA127 GLY128 TYR129 SER130 ILE131 GLY132 GLY133 GLY134 HIS135 VAL136 LEU137 HIS138 MET139 MET140 CYS141 ASP142 LEU143 THR144 ILE145 ALA146 ALA147 ASP148 ASN149 ALA150 ILE151 PHE152 GLY153 GLN154 THR155 GLY156 PRO157 LYS158 VAL159 GLY160 SER161 PHE162 ASP163 GLY164 GLY165 TRP166 GLY167 ALA168 SER169 TYR170 MET171 ALA172 ARG173 ILE174 VAL175 GLY176 GLN177 LYS178 LYS179 ALA180 ARG181 GLU182 ILE183 TRP184 PHE185 LEU186 CYS187 ARG188 GLN189 TYR190 ASP191 ALA192 LYS193 GLN194 ALA195 LEU196 ASP197 MET198 GLY199 LEU200 VAL201 ASN202 THR203 VAL204 VAL205 PRO206 LEU207 ALA208 ASP209 LEU210 GLU211 LYS212 GLU213 THR214 VAL215 ARG216 TRP217 CYS218 ARG219 GLU220 MET221 LEU222 GLN223 ASN224 SER225 PRO226 MET227 ALA228 LEU229 ARG230 CYS231 LEU232 LYS233 ALA234 ALA235 LEU236 ASN237 ALA238 ASP239 CYS240 ASP241 GLY242 GLN243 ALA244 GLY245 LEU246 GLN247 GLU248 LEU249 ALA250 GLY251 ASN252 ALA253 THR254 MET255 LEU256 PHE257 TYR258 MET259 THR260 GLU261 GLU262 GLY263 GLN264 GLU265 GLY266 ARG267 ASN268 ALA269 PHE270 ASN271 GLN272 LYS273 ARG274 GLN275 PRO276 ASP277 PHE278 SER279 LYS280 PHE281 LYS282 ARG283 ASN284 PRO285
Unit 6 ASP5 GLU6 ALA7 MET8 LEU9 TYR10 ALA11 PRO12 VAL13 GLU14 TRP15 HIS16 ASP17 CYS18 SER19 GLU20 GLY21 PHE22 GLU23 ASP24 ILE25 ARG26 TYR27 GLU28 LYS29 SER30 THR31 ASP32 GLY33 ILE34 ALA35 LYS36 ILE37 THR38 ILE39 ASN40 ARG41 PRO42 GLN43 VAL44 ARG45 ASN46 ALA47 PHE48 ARG49 PRO50 LEU51 THR52 VAL53 LYS54 GLU55 MET56 ILE57 GLN58 ALA59 LEU60 ALA61 ASP62 ALA63 ARG64 TYR65 ASP66 ASP67 ASN68 ILE69 GLY70 VAL71 ILE72 ILE73 LEU74 THR75 GLY76 ALA77 GLY78 ASP79 LYS80 ALA81 PHE82 CYS83 SER84 GLY85 GLY86 ASP87 GLN88 LYS89 VAL90 ARG91 GLY92 ASP93 TYR94 GLY95 GLY96 TYR97 LYS98 ASP99 ASP100 SER101 GLY102 VAL103 HIS104 HIS105 LEU106 ASN107 VAL108 LEU109 ASP110 PHE111 GLN112 ARG113 GLN114 ILE115 ARG116 THR117 CYS118 PRO119 LYS120 PRO121 VAL122 VAL123 ALA124 MET125 VAL126 ALA127 GLY128 TYR129 SER130 ILE131 GLY132 GLY133 GLY134 HIS135 VAL136 LEU137 HIS138 MET139 MET140 CYS141 ASP142 LEU143 THR144 ILE145 ALA146 ALA147 ASP148 ASN149 ALA150 ILE151 PHE152 GLY153 GLN154 THR155 GLY156 PRO157 LYS158 VAL159 GLY160 SER161 PHE162 ASP163 GLY164 GLY165 TRP166 GLY167 ALA168 SER169 TYR170 MET171 ALA172 ARG173 ILE174 VAL175 GLY176 GLN177 LYS178 LYS179 ALA180 ARG181 GLU182 ILE183 TRP184 PHE185 LEU186 CYS187 ARG188 GLN189 TYR190 ASP191 ALA192 LYS193 GLN194 ALA195 LEU196 ASP197 MET198 GLY199 LEU200 VAL201 ASN202 THR203 VAL204 VAL205 PRO206 LEU207 ALA208 ASP209 LEU210 GLU211 LYS212 GLU213 THR214 VAL215 ARG216 TRP217 CYS218 ARG219 GLU220 MET221 LEU222 GLN223 ASN224 SER225 PRO226 MET227 ALA228 LEU229 ARG230 CYS231 LEU232 LYS233 ALA234 ALA235 LEU236 ASN237 ALA238 ASP239 CYS240 ASP241 GLY242 GLN243 ALA244 GLY245 LEU246 GLN247 GLU248 LEU249 ALA250 GLY251 ASN252 ALA253 THR254 MET255 LEU256 PHE257 TYR258 MET259 THR260 GLU261 GLU262 GLY263 GLN264 GLU265 GLY266 ARG267 ASN268 ALA269 PHE270 ASN271 GLN272 LYS273 ARG274 GLN275 PRO276 ASP277 PHE278 SER279 LYS280 PHE281 LYS282 ARG283 ASN284 PRO285
Ligands
Unit 7 S0N300 CL301 PGE302 GOL303
Unit 8 S0N400 CL401 PGE402 GOL403
Unit 9 S0N500 CL501 PGE502 GOL503
Unit 10 S0N600 CL601 PGE602 GOL603
Unit 11 S0N700 CL701 PGE702 GOL703
Unit 12 S0N800 CL801 PGE802 GOL803
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany