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3T88
Asym. Unit
Info
Asym.Unit (297 KB)
Biol.Unit 1 (288 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ESCHERICHIA COLI MENB IN COMPLEX WITH SUBSTRATE ANALOGUE, OSB-NCOA
Authors
:
H-J. Li, X. Li, N. Liu, H. Zhang, J. Truglio, S. Mishra, C. Kisker, M. Garc P. Tonge
Date
:
01 Aug 11 (Deposition) - 24 Aug 11 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Crotonase Superfamily, Lyase-Lyase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Li, X. Li, N. Liu, H. Zhang, J. J. Truglio, S. Mishra, C. Kisker, M. Garcia-Diaz, P. J. Tonge
Mechanism Of The Intramolecular Claisen Condensation Reaction Catalyzed By Menb, A Crotonase Superfamily Member.
Biochemistry V. 50 9532 2011
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: TRIETHYLENE GLYCOL (PGEa)
3b: TRIETHYLENE GLYCOL (PGEb)
3c: TRIETHYLENE GLYCOL (PGEc)
3d: TRIETHYLENE GLYCOL (PGEd)
3e: TRIETHYLENE GLYCOL (PGEe)
3f: TRIETHYLENE GLYCOL (PGEf)
4a: O-SUCCINYLBENZOYL-N-COENZYME A (S0Na)
4b: O-SUCCINYLBENZOYL-N-COENZYME A (S0Nb)
4c: O-SUCCINYLBENZOYL-N-COENZYME A (S0Nc)
4d: O-SUCCINYLBENZOYL-N-COENZYME A (S0Nd)
4e: O-SUCCINYLBENZOYL-N-COENZYME A (S0Ne)
4f: O-SUCCINYLBENZOYL-N-COENZYME A (S0Nf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
2
GOL
6
Ligand/Ion
GLYCEROL
3
PGE
6
Ligand/Ion
TRIETHYLENE GLYCOL
4
S0N
6
Ligand/Ion
O-SUCCINYLBENZOYL-N-COENZYME A
[
close Hetero Component info
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:43 , VAL A:44 , ARG A:45 , ALA A:47 , PHE A:48 , SER A:84 , GLY A:85 , GLY A:86 , ASP A:87 , GLN A:88 , LYS A:89 , TYR A:97 , LEU A:106 , VAL A:108 , LEU A:109 , TYR A:129 , ILE A:131 , GLY A:133 , THR A:155 , VAL A:159 , SER A:161 , PHE A:162 , ASP A:163 , GLN A:189 , HOH A:1190 , HOH A:1196 , TYR E:258 , PHE E:270 , LYS E:273
BINDING SITE FOR RESIDUE S0N A 300
02
AC2
SOFTWARE
GLY A:132 , GLN A:154 , THR A:155 , GLY A:156 , TRP A:184 , HOH A:1190
BINDING SITE FOR RESIDUE CL A 301
03
AC3
SOFTWARE
LYS A:54 , HIS A:105 , TYR E:65
BINDING SITE FOR RESIDUE PGE A 302
04
AC4
SOFTWARE
THR A:203 , GLU A:213 , ARG A:216 , TRP A:217 , ARG C:188
BINDING SITE FOR RESIDUE GOL A 303
05
AC5
SOFTWARE
GLN B:43 , VAL B:44 , ARG B:45 , ALA B:47 , PHE B:48 , SER B:84 , GLY B:85 , GLY B:86 , ASP B:87 , GLN B:88 , LYS B:89 , TYR B:97 , VAL B:108 , LEU B:109 , TYR B:129 , ILE B:131 , GLY B:133 , THR B:155 , VAL B:159 , SER B:161 , PHE B:162 , ASP B:163 , GLN B:189 , HOH B:326 , HOH B:513 , HOH B:1191 , LYS D:280 , TYR F:258 , PHE F:270 , LYS F:273
BINDING SITE FOR RESIDUE S0N B 400
06
AC6
SOFTWARE
GLY B:132 , GLN B:154 , THR B:155 , GLY B:156 , TRP B:184 , HOH B:1191
BINDING SITE FOR RESIDUE CL B 401
07
AC7
SOFTWARE
LYS B:54 , HIS B:105 , TYR F:65
BINDING SITE FOR RESIDUE PGE B 402
08
AC8
SOFTWARE
ARG A:188 , THR B:203 , VAL B:205 , GLU B:213 , ARG B:216 , TRP B:217
BINDING SITE FOR RESIDUE GOL B 403
09
AC9
SOFTWARE
GLN C:43 , VAL C:44 , ARG C:45 , ALA C:47 , SER C:84 , GLY C:85 , GLY C:86 , ASP C:87 , GLN C:88 , LYS C:89 , TYR C:97 , VAL C:108 , LEU C:109 , TYR C:129 , ILE C:131 , GLY C:133 , THR C:155 , VAL C:159 , SER C:161 , PHE C:162 , GLN C:189 , HOH C:288 , HOH C:505 , HOH C:648 , HOH C:1192 , TYR D:258 , PHE D:270 , LYS D:273
BINDING SITE FOR RESIDUE S0N C 500
10
BC1
SOFTWARE
GLY C:132 , GLN C:154 , THR C:155 , GLY C:156 , TRP C:184 , HOH C:1192
BINDING SITE FOR RESIDUE CL C 501
11
BC2
SOFTWARE
LYS C:54 , HIS C:105 , HOH C:311 , HOH C:1131
BINDING SITE FOR RESIDUE PGE C 502
12
BC3
SOFTWARE
ARG B:188 , THR C:203 , VAL C:205 , GLU C:213 , ARG C:216 , TRP C:217
BINDING SITE FOR RESIDUE GOL C 503
13
BC4
SOFTWARE
TYR C:258 , PHE C:270 , GLN D:43 , VAL D:44 , ARG D:45 , ALA D:47 , PHE D:48 , SER D:84 , GLY D:85 , GLY D:86 , ASP D:87 , GLN D:88 , LYS D:89 , TYR D:97 , VAL D:108 , LEU D:109 , TYR D:129 , ILE D:131 , GLY D:132 , GLY D:133 , THR D:155 , VAL D:159 , SER D:161 , PHE D:162 , ASP D:163 , GLN D:189 , HOH D:766 , HOH D:914 , HOH D:1193
BINDING SITE FOR RESIDUE S0N D 600
14
BC5
SOFTWARE
GLY D:132 , GLN D:154 , THR D:155 , GLY D:156 , TRP D:184 , HOH D:1193
BINDING SITE FOR RESIDUE CL D 601
15
BC6
SOFTWARE
TYR C:65 , LYS D:54 , HIS D:105 , ASN D:107
BINDING SITE FOR RESIDUE PGE D 602
16
BC7
SOFTWARE
THR D:203 , VAL D:205 , GLU D:213 , ARG D:216 , TRP D:217 , HOH D:683 , ARG E:188
BINDING SITE FOR RESIDUE GOL D 603
17
BC8
SOFTWARE
TYR A:258 , PHE A:270 , LYS A:273 , GLN E:43 , VAL E:44 , ARG E:45 , ALA E:47 , PHE E:48 , SER E:84 , GLY E:85 , GLY E:86 , ASP E:87 , GLN E:88 , LYS E:89 , TYR E:97 , LEU E:106 , VAL E:108 , LEU E:109 , TYR E:129 , ILE E:131 , GLY E:133 , THR E:155 , VAL E:159 , SER E:161 , PHE E:162 , ASP E:163 , GLN E:189 , HOH E:321 , HOH E:473 , HOH E:1194
BINDING SITE FOR RESIDUE S0N E 700
18
BC9
SOFTWARE
GLY E:132 , GLN E:154 , THR E:155 , GLY E:156 , TRP E:184 , HOH E:1194
BINDING SITE FOR RESIDUE CL E 701
19
CC1
SOFTWARE
LYS E:54 , HIS E:105 , HOH E:312 , HOH E:1208
BINDING SITE FOR RESIDUE PGE E 702
20
CC2
SOFTWARE
THR E:203 , VAL E:205 , GLU E:213 , ARG E:216 , TRP E:217 , ARG F:188
BINDING SITE FOR RESIDUE GOL E 703
21
CC3
SOFTWARE
TYR B:258 , PHE B:270 , LYS B:273 , GLN F:43 , VAL F:44 , ARG F:45 , ALA F:47 , PHE F:48 , SER F:84 , GLY F:85 , GLY F:86 , ASP F:87 , GLN F:88 , LYS F:89 , TYR F:97 , VAL F:108 , LEU F:109 , TYR F:129 , ILE F:131 , GLY F:133 , THR F:155 , VAL F:159 , SER F:161 , PHE F:162 , ASP F:163 , GLN F:189 , HOH F:1195
BINDING SITE FOR RESIDUE S0N F 800
22
CC4
SOFTWARE
GLY F:132 , GLN F:154 , THR F:155 , GLY F:156 , TRP F:184 , HOH F:1195
BINDING SITE FOR RESIDUE CL F 801
23
CC5
SOFTWARE
LYS F:54 , HIS F:105
BINDING SITE FOR RESIDUE PGE F 802
24
CC6
SOFTWARE
ARG D:188 , THR F:203 , VAL F:205 , GLU F:213 , ARG F:216 , TRP F:217
BINDING SITE FOR RESIDUE GOL F 803
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: ENOYL_COA_HYDRATASE (A:123-143,B:123-143,C:123-143,D:12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOYL_COA_HYDRATASE
PS00166
Enoyl-CoA hydratase/isomerase signature.
MENB_ECOLI
123-143
6
A:123-143
B:123-143
C:123-143
D:123-143
E:123-143
F:123-143
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3t88a_ (A:)
1b: SCOP_d3t88b_ (B:)
1c: SCOP_d3t88c_ (C:)
1d: SCOP_d3t88d_ (D:)
1e: SCOP_d3t88e_ (E:)
1f: SCOP_d3t88f_ (F:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
automated matches
(96)
Protein domain
:
automated matches
(96)
Escherichia coli [TaxId: 562]
(2)
1a
d3t88a_
A:
1b
d3t88b_
B:
1c
d3t88c_
C:
1d
d3t88d_
D:
1e
d3t88e_
E:
1f
d3t88f_
F:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
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Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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Asym.Unit (297 KB)
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