3SH6 - JenaLib

Title :   FROG M-FERRITIN, D122R MUTANT, WITH MAGNESIUM

Authors :   T. Tosha, H. L. Ng, T. Alber, E. C. Theil

Date :   16 Jun 11 (Deposition) - 29 Feb 12 (Release) - 29 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym. Unit : A
Biol. Unit 1: A  (24x)

Keywords :   Iron Storage, Diiron, Metal-Binding, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Tosha, H. L. Ng, T. Alber, E. C. Theil
Frog M-Ferritin, D122R Mutant, With Magnesium
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 10)

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:103 , GLN A:137 , ASP A:140 , HOH A:249 , HOH A:282 , HOH A:291	BINDING SITE FOR RESIDUE MG A 176
02	AC2	SOFTWARE	MG A:178 , HOH A:199 , HOH A:316 , HOH A:317	BINDING SITE FOR RESIDUE MG A 177
03	AC3	SOFTWARE	LYS A:83 , MG A:177 , HOH A:187 , HOH A:199 , HOH A:316 , HOH A:317	BINDING SITE FOR RESIDUE MG A 178
04	AC4	SOFTWARE	HOH A:315	BINDING SITE FOR RESIDUE MG A 179
05	AC5	SOFTWARE	GLU A:57 , GLU A:136 , ASP A:140 , HOH A:281 , HOH A:318 , HOH A:319	BINDING SITE FOR RESIDUE MG A 180
06	AC6	SOFTWARE	HIS A:169	BINDING SITE FOR RESIDUE CL A 181
07	AC7	SOFTWARE	HIS A:169	BINDING SITE FOR RESIDUE CL A 182
08	AC8	SOFTWARE	ASP A:87 , HOH A:312	BINDING SITE FOR RESIDUE CL A 183
09	AC9	SOFTWARE	GLU A:23 , GLU A:58 , HIS A:61 , GLN A:137 , HOH A:267 , HOH A:291	BINDING SITE FOR RESIDUE MG A 184
10	BC1	SOFTWARE	HOH A:273 , HOH A:300	BINDING SITE FOR RESIDUE MG A 185

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 3)

Asymmetric Unit (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FERRITIN_LIKE	PS50905	Ferritin-like diiron domain profile.	FRI2_LITCT	7-156	1	A:6-155
2	FERRITIN_1	PS00540	Ferritin iron-binding regions signature 1.	FRI2_LITCT	58-76	1	A:57-75
3	FERRITIN_2	PS00204	Ferritin iron-binding regions signature 2.	FRI2_LITCT	123-143	1	A:123-142

Biological Unit 1 (3, 72)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FERRITIN_LIKE	PS50905	Ferritin-like diiron domain profile.	FRI2_LITCT	7-156	24	A:6-155
2	FERRITIN_1	PS00540	Ferritin iron-binding regions signature 1.	FRI2_LITCT	58-76	24	A:57-75
3	FERRITIN_2	PS00204	Ferritin iron-binding regions signature 2.	FRI2_LITCT	123-143	24	A:123-142

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:174
 aligned with FRI2_LITCT | P07798 from UniProtKB/Swiss-Prot  Length:176

    Alignment length:174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    
           FRI2_LITCT     2 VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRGGRVVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLGLPENGMGEYLFDKHSVKES 175
               SCOP domains d3sh6a_ A: automated matches                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -----FERRITIN_LIKE  PDB: A:6-155 UniProt: 7-156                                                                                                            ------------------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------FERRITIN_1         ----------------------------------------------FERRITIN_2           -------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3sh6 A   1 VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRGGRVVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVRPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLGLPENGMGEYLFDKHSVKES 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric Unit(hide GO term definitions)

Chain A (FRI2_LITCT | P07798)

molecular function
	GO:0008199	ferric iron binding	Interacting selectively and non-covalently with ferric iron, Fe(III).
	GO:0004322	ferroxidase activity	Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0006879	cellular iron ion homeostasis	Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
	GO:0006826	iron ion transport	The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005623	cell	The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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