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Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN NADPH-CYTOCHROME P450 (V492E MUTANT)

Authors :   C. Xia, C. Marohnic, S. P. Panda, B. S. Masters, J. -J. P. Kim

Date :   21 Jan 11 (Deposition) - 03 Aug 11 (Release) - 31 Aug 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Human Cypor, Cytochrome P450 Reductase, Flavoprotein, Fad, Fmn, Nadph, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Xia, S. P. Panda, C. C. Marohnic, P. Martasek, B. S. Masters, J. J. Kim
Structural Basis For Human Nadph-Cytochrome P450 Oxidoreductase Deficiency.
Proc. Natl. Acad. Sci. Usa V. 108 13486 2011
PubMed-ID: 21808038 | Reference-DOI: 10.1073/PNAS.1106632108

Molecule 1 - NADPH--CYTOCHROME P450 REDUCTASE
	Chains	:	A, B
	EC Number	:	1.6.2.4
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A-WT CYPOR
	Expression System Strain	:	JM109(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 64-677
	Gene	:	POR, CYPOR
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CPR, P450R

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 7)

No.	Name	Count	Type	Full Name
1	CA	1	Ligand/Ion	CALCIUM ION
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE
4	NAP	2	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE
4	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE
4	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:1 , HOH A:3 , HOH A:6 , HOH A:33 , HOH A:55 , HIS A:322 , ARG A:427 , ARG A:457 , TYR A:458 , TYR A:459 , SER A:460 , CYS A:475 , ALA A:476 , VAL A:477 , VAL A:479 , TYR A:481 , GLY A:491 , GLU A:492 , ALA A:493 , THR A:494 , TRP A:679 , HOH A:721 , HOH A:735 , FMN A:751 , HOH A:835 , HOH A:866 , HOH A:955 , HOH A:988 , HOH A:1059 , HOH A:1086 , HOH A:1107 , HOH A:1189	BINDING SITE FOR RESIDUE FAD A 752
2	AC2	SOFTWARE	HOH A:31 , SER A:89 , GLN A:90 , THR A:91 , GLY A:92 , THR A:93 , ALA A:94 , ALA A:141 , THR A:142 , TYR A:143 , GLY A:144 , GLY A:146 , LEU A:176 , GLY A:177 , ASN A:178 , TYR A:181 , HIS A:183 , PHE A:184 , ASN A:185 , LEU A:215 , HOH A:713 , FAD A:752 , HOH A:807 , HOH A:933	BINDING SITE FOR RESIDUE FMN A 751
3	AC3	SOFTWARE	HOH A:19 , ARG A:301 , GLY A:537 , THR A:538 , CYS A:569 , ARG A:570 , SER A:599 , ARG A:600 , LYS A:605 , TYR A:607 , GLN A:609 , ASN A:637 , MET A:638 , ASP A:641 , HOH A:683 , HOH A:776 , HOH A:980 , HOH A:1109 , HOH A:1124	BINDING SITE FOR RESIDUE NAP A 753
4	AC4	SOFTWARE	HOH A:34 , ASN A:595 , HOH A:710 , HOH A:912 , HOH A:990 , HOH A:1190 , HOH A:1191	BINDING SITE FOR RESIDUE CA A 762
5	AC5	SOFTWARE	HIS B:322 , ARG B:427 , ARG B:457 , TYR B:458 , TYR B:459 , SER B:460 , CYS B:475 , ALA B:476 , VAL B:477 , VAL B:479 , GLY B:491 , GLU B:492 , ALA B:493 , THR B:494 , ALA B:541 , TRP B:679 , HOH B:702 , HOH B:711 , FMN B:751 , HOH B:760 , HOH B:776	BINDING SITE FOR RESIDUE FAD B 752
6	AC6	SOFTWARE	SER B:89 , GLN B:90 , THR B:91 , GLY B:92 , THR B:93 , ALA B:94 , ALA B:141 , THR B:142 , TYR B:143 , GLY B:144 , GLY B:146 , LEU B:176 , GLY B:177 , ASN B:178 , TYR B:181 , HIS B:183 , PHE B:184 , ASN B:185 , ASP B:211 , LEU B:215 , HOH B:705 , FAD B:752	BINDING SITE FOR RESIDUE FMN B 751
7	AC7	SOFTWARE	ARG B:301 , GLY B:537 , THR B:538 , CYS B:569 , ARG B:570 , SER B:599 , ARG B:600 , LYS B:605 , TYR B:607 , GLN B:609 , ARG B:636 , ASN B:637 , MET B:638 , ASP B:641 , TRP B:679 , SER B:680 , HOH B:706 , HOH B:721 , HOH B:782 , HOH B:800 , HOH B:831	BINDING SITE FOR RESIDUE NAP B 753

(no "SS Bond" information available for 3QFC)

Asymmetric Unit

No.	Residues
1	Pro A:277	-	Pro A:278
2	Cys A:366	-	Pro A:367
3	Pro B:277	-	Pro B:278
4	Cys B:366	-	Pro B:367

Asymmetric Unit (11, 22)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_021154	Y	178	D	NCPR_HUMAN	Disease (DISPORD)	---	A/B	Y	181	D
02	UniProt	VAR_047885	P	225	L	NCPR_HUMAN	Polymorphism	---	A/B	L	228	L
03	UniProt	VAR_047886	D	252	N	NCPR_HUMAN	Polymorphism	---	A/B	D	255	N
04	UniProt	VAR_021155	A	284	P	NCPR_HUMAN	Disease (DISPORD)	---	A/B	A	287	P
05	UniProt	VAR_021156	R	454	H	NCPR_HUMAN	Disease (DISPORD)	---	A/B	R	457	H
06	UniProt	VAR_021157	V	489	E	NCPR_HUMAN	Disease (ABS1)	---	A/B	E	492	E
07	UniProt	VAR_004617	A	500	V	NCPR_HUMAN	Polymorphism	1057868	A/B	V	503	V
08	UniProt	VAR_004618	R	551	Q	NCPR_HUMAN	Polymorphism	---	A/B	R	554	Q
09	UniProt	VAR_021158	C	566	Y	NCPR_HUMAN	Disease (DISPORD)	---	A/B	C	569	Y
10	UniProt	VAR_021159	Y	575	C	NCPR_HUMAN	Disease (ABS1)	---	A/B	Y	578	C
11	UniProt	VAR_021160	V	605	F	NCPR_HUMAN	Disease (DISPORD)	---	A/B	V	608	F

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (11, 11)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_021154	Y	178	D	NCPR_HUMAN	Disease (DISPORD)	---	A	Y	181	D
02	UniProt	VAR_047885	P	225	L	NCPR_HUMAN	Polymorphism	---	A	L	228	L
03	UniProt	VAR_047886	D	252	N	NCPR_HUMAN	Polymorphism	---	A	D	255	N
04	UniProt	VAR_021155	A	284	P	NCPR_HUMAN	Disease (DISPORD)	---	A	A	287	P
05	UniProt	VAR_021156	R	454	H	NCPR_HUMAN	Disease (DISPORD)	---	A	R	457	H
06	UniProt	VAR_021157	V	489	E	NCPR_HUMAN	Disease (ABS1)	---	A	E	492	E
07	UniProt	VAR_004617	A	500	V	NCPR_HUMAN	Polymorphism	1057868	A	V	503	V
08	UniProt	VAR_004618	R	551	Q	NCPR_HUMAN	Polymorphism	---	A	R	554	Q
09	UniProt	VAR_021158	C	566	Y	NCPR_HUMAN	Disease (DISPORD)	---	A	C	569	Y
10	UniProt	VAR_021159	Y	575	C	NCPR_HUMAN	Disease (ABS1)	---	A	Y	578	C
11	UniProt	VAR_021160	V	605	F	NCPR_HUMAN	Disease (DISPORD)	---	A	V	608	F

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (11, 11)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_021154	Y	178	D	NCPR_HUMAN	Disease (DISPORD)	---	B	Y	181	D
02	UniProt	VAR_047885	P	225	L	NCPR_HUMAN	Polymorphism	---	B	L	228	L
03	UniProt	VAR_047886	D	252	N	NCPR_HUMAN	Polymorphism	---	B	D	255	N
04	UniProt	VAR_021155	A	284	P	NCPR_HUMAN	Disease (DISPORD)	---	B	A	287	P
05	UniProt	VAR_021156	R	454	H	NCPR_HUMAN	Disease (DISPORD)	---	B	R	457	H
06	UniProt	VAR_021157	V	489	E	NCPR_HUMAN	Disease (ABS1)	---	B	E	492	E
07	UniProt	VAR_004617	A	500	V	NCPR_HUMAN	Polymorphism	1057868	B	V	503	V
08	UniProt	VAR_004618	R	551	Q	NCPR_HUMAN	Polymorphism	---	B	R	554	Q
09	UniProt	VAR_021158	C	566	Y	NCPR_HUMAN	Disease (DISPORD)	---	B	C	569	Y
10	UniProt	VAR_021159	Y	575	C	NCPR_HUMAN	Disease (ABS1)	---	B	Y	578	C
11	UniProt	VAR_021160	V	605	F	NCPR_HUMAN	Disease (DISPORD)	---	B	V	608	F

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	NCPR_HUMAN	80-224	2	A:83-227 B:83-227
2	FAD_FR	PS51384	Ferredoxin reductase-type FAD binding domain profile.	NCPR_HUMAN	279-521	2	A:282-524 B:282-524

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	NCPR_HUMAN	80-224	1	A:83-227 -
2	FAD_FR	PS51384	Ferredoxin reductase-type FAD binding domain profile.	NCPR_HUMAN	279-521	1	A:282-524 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	NCPR_HUMAN	80-224	1	- B:83-227
2	FAD_FR	PS51384	Ferredoxin reductase-type FAD binding domain profile.	NCPR_HUMAN	279-521	1	- B:282-524

(no "Exon" information available for 3QFC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:607
 aligned with NCPR_HUMAN | P16435 from UniProtKB/Swiss-Prot  Length:677

    Alignment length:612
                                    75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675  
           NCPR_HUMAN    66 ESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQETDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHFGVEATGEESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 677
               SCOP domains d3qfca1 A:69-242 automated matches                                                                                                                                            d3qfca2 A:243-521 automated matches                                                                                                                                                                                                                                                    d3qfca3 A:522-680 automated matches                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh...eeeeeeeeehhhee...hhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhhh..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh............eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhhh.....eeeeee..............eehhhhhhhh.......hhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhh.....hhhhhhhh......hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhh....-----..eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------D----------------------------------------------L--------------------------N-------------------------------P-------------------------------------------------------------------------------------------------------------------------------------------------------------------------H----------------------------------E----------V--------------------------------------------------Q--------------Y--------C-----------------------------F------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------FLAVODOXIN_LIKE  PDB: A:83-227 UniProt: 80-224                                                                                                   ------------------------------------------------------FAD_FR  PDB: A:282-524 UniProt: 279-521                                                                                                                                                                                                            ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3qfc A  69 ESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQETDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWLAVCEHFGVEATGEESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGEATNWLRAKEPV-----RALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 680
                                    78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498    |    -|      518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            503   509

Chain B from PDB  Type:PROTEIN  Length:595
 aligned with NCPR_HUMAN | P16435 from UniProtKB/Swiss-Prot  Length:677

    Alignment length:611
                                    76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676 
           NCPR_HUMAN    67 SSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQETDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHFGVEATGEESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 677
               SCOP domains d3qfcb1 B:70-241 automated matches                                                                                                                                             d3qfcb2 B:245-521 automated matches                                                                                                                                                                                                                                                  d3qfcb3 B:522-680 automated matches                                                                                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh...eeeeeeeee...ee...hhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhhh..ee....eeee...hhhhhhhhhhhhhhhhhhhhhh......---...eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhhh.....eeeeee..............eehhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee....--------.hhhhhhhhh....-----..eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------D----------------------------------------------L--------------------------N-------------------------------P-------------------------------------------------------------------------------------------------------------------------------------------------------------------------H----------------------------------E----------V--------------------------------------------------Q--------------Y--------C-----------------------------F------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------FLAVODOXIN_LIKE  PDB: B:83-227 UniProt: 80-224                                                                                                   ------------------------------------------------------FAD_FR  PDB: B:282-524 UniProt: 279-521                                                                                                                                                                                                            ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qfc B  70 SSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQETDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWLAVCEHFGVEATGE---IRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEY--------KGEATNWLRAKEPV-----RALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 680
                                    79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239 |   | 249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479 |       -|      499   |   509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679 
                                                                                                                                                                                                     241 245                                                                                                                                                                                                                                         481      490          503   509

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 3QFC)

(no "Pfam Domain" information available for 3QFC)

Asymmetric Unit(hide GO term definitions)

Chain A,B (NCPR_HUMAN | P16435)

molecular function
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0003958	NADPH-hemoprotein reductase activity	Catalysis of the reaction: NADPH + H+ + n oxidized hemoprotein = NADP+ + n reduced hemoprotein.
	GO:0030586	[methionine synthase] reductase activity	Catalysis of the reaction: [methionine synthase]-cob(II)alamin + NADPH + H+ + S-adenosyl methionine = [methionine synthase]-methylcob(I)alamin + S-adenosylhomocysteine + NADP+.
	GO:0004128	cytochrome-b5 reductase activity, acting on NAD(P)H	Catalysis of the reaction: NAD(P)H + H+ + 2 ferricytochrome b(5) = NAD(P)+ + 2 ferrocytochrome b(5).
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0019899	enzyme binding	Interacting selectively and non-covalently with any enzyme.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0047726	iron-cytochrome-c reductase activity	Catalysis of the reaction: ferrocytochrome c + Fe3+ = ferricytochrome c + Fe2+.
	GO:0008941	nitric oxide dioxygenase activity	Catalysis of the reaction: 2 NO + 2 O2 + NADPH + H+ = 2 nitrate + NADP+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0009437	carnitine metabolic process	The chemical reactions and pathways involving carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane.
	GO:0090346	cellular organofluorine metabolic process	The chemical reactions and pathways involving organofluorine compounds, as carried out by individual cells.
	GO:0071372	cellular response to follicle-stimulating hormone stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a follicle-stimulating hormone stimulus.
	GO:0071371	cellular response to gonadotropin stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gonadotropin stimulus.
	GO:0071375	cellular response to peptide hormone stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals.
	GO:0070988	demethylation	The process of removing one or more methyl groups from a molecule.
	GO:0019395	fatty acid oxidation	The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen.
	GO:0009812	flavonoid metabolic process	The chemical reactions and pathways involving flavonoids, a group of water-soluble phenolic derivatives containing a flavan skeleton including flavones, flavonols and flavanoids, and anthocyanins.
	GO:0018393	internal peptidyl-lysine acetylation	The addition of an acetyl group to a non-terminal lysine residue in a protein.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:0043154	negative regulation of cysteine-type endopeptidase activity involved in apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of a cysteine-type endopeptidase activity involved in the apoptotic process.
	GO:0060192	negative regulation of lipase activity	Any process that decreases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid.
	GO:0043602	nitrate catabolic process	The chemical reactions and pathways resulting in the breakdown of nitrates, inorganic or organic salts and esters of nitric acid.
	GO:0046210	nitric oxide catabolic process	The chemical reactions and pathways resulting in the breakdown of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0045542	positive regulation of cholesterol biosynthetic process	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol.
	GO:0032332	positive regulation of chondrocyte differentiation	Any process that activates or increases the frequency, rate or extent of chondrocyte differentiation.
	GO:0032770	positive regulation of monooxygenase activity	Any process that activates or increases the activity of a monooxygenase.
	GO:0045880	positive regulation of smoothened signaling pathway	Any process that activates or increases the frequency, rate or extent of smoothened signaling.
	GO:0090031	positive regulation of steroid hormone biosynthetic process	Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones.
	GO:0090181	regulation of cholesterol metabolic process	Any process that modulates the rate, frequency, or extent of cholesterol metabolism, the chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
	GO:0003420	regulation of growth plate cartilage chondrocyte proliferation	Any process that modulates the rate, frequency, or extent of the multiplication or reproduction of chondrocytes in a growing endochondral bone, resulting in the expansion of a cell population.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0007584	response to nutrient	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
	GO:0006805	xenobiotic metabolic process	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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	3qfc
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	NCPR_HUMAN \| P16435	:	1b1c 3fjo 3qe2 3qfr 3qfs 3qft 5emn 5fa6

3qe2	FULL-LENGTH WILD TYPE
3qfr	FULL-LENGTH R457H MUTANT
3qfs	FAD/NADPH DOMAIN WILD TYPE
3qft	FAD/NADPH DOMAIN R457H MUTANT

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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