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3QFC
Asym. Unit
Info
Asym.Unit (220 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN NADPH-CYTOCHROME P450 (V492E MUTANT)
Authors
:
C. Xia, C. Marohnic, S. P. Panda, B. S. Masters, J. -J. P. Kim
Date
:
21 Jan 11 (Deposition) - 03 Aug 11 (Release) - 31 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Human Cypor, Cytochrome P450 Reductase, Flavoprotein, Fad, Fmn, Nadph, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Xia, S. P. Panda, C. C. Marohnic, P. Martasek, B. S. Masters, J. J. Kim
Structural Basis For Human Nadph-Cytochrome P450 Oxidoreductase Deficiency.
Proc. Natl. Acad. Sci. Usa V. 108 13486 2011
[
close entry info
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3a: FLAVIN MONONUCLEOTIDE (FMNa)
3b: FLAVIN MONONUCLEOTIDE (FMNb)
4a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
4b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
FMN
2
Ligand/Ion
FLAVIN MONONUCLEOTIDE
4
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:1 , HOH A:3 , HOH A:6 , HOH A:33 , HOH A:55 , HIS A:322 , ARG A:427 , ARG A:457 , TYR A:458 , TYR A:459 , SER A:460 , CYS A:475 , ALA A:476 , VAL A:477 , VAL A:479 , TYR A:481 , GLY A:491 , GLU A:492 , ALA A:493 , THR A:494 , TRP A:679 , HOH A:721 , HOH A:735 , FMN A:751 , HOH A:835 , HOH A:866 , HOH A:955 , HOH A:988 , HOH A:1059 , HOH A:1086 , HOH A:1107 , HOH A:1189
BINDING SITE FOR RESIDUE FAD A 752
2
AC2
SOFTWARE
HOH A:31 , SER A:89 , GLN A:90 , THR A:91 , GLY A:92 , THR A:93 , ALA A:94 , ALA A:141 , THR A:142 , TYR A:143 , GLY A:144 , GLY A:146 , LEU A:176 , GLY A:177 , ASN A:178 , TYR A:181 , HIS A:183 , PHE A:184 , ASN A:185 , LEU A:215 , HOH A:713 , FAD A:752 , HOH A:807 , HOH A:933
BINDING SITE FOR RESIDUE FMN A 751
3
AC3
SOFTWARE
HOH A:19 , ARG A:301 , GLY A:537 , THR A:538 , CYS A:569 , ARG A:570 , SER A:599 , ARG A:600 , LYS A:605 , TYR A:607 , GLN A:609 , ASN A:637 , MET A:638 , ASP A:641 , HOH A:683 , HOH A:776 , HOH A:980 , HOH A:1109 , HOH A:1124
BINDING SITE FOR RESIDUE NAP A 753
4
AC4
SOFTWARE
HOH A:34 , ASN A:595 , HOH A:710 , HOH A:912 , HOH A:990 , HOH A:1190 , HOH A:1191
BINDING SITE FOR RESIDUE CA A 762
5
AC5
SOFTWARE
HIS B:322 , ARG B:427 , ARG B:457 , TYR B:458 , TYR B:459 , SER B:460 , CYS B:475 , ALA B:476 , VAL B:477 , VAL B:479 , GLY B:491 , GLU B:492 , ALA B:493 , THR B:494 , ALA B:541 , TRP B:679 , HOH B:702 , HOH B:711 , FMN B:751 , HOH B:760 , HOH B:776
BINDING SITE FOR RESIDUE FAD B 752
6
AC6
SOFTWARE
SER B:89 , GLN B:90 , THR B:91 , GLY B:92 , THR B:93 , ALA B:94 , ALA B:141 , THR B:142 , TYR B:143 , GLY B:144 , GLY B:146 , LEU B:176 , GLY B:177 , ASN B:178 , TYR B:181 , HIS B:183 , PHE B:184 , ASN B:185 , ASP B:211 , LEU B:215 , HOH B:705 , FAD B:752
BINDING SITE FOR RESIDUE FMN B 751
7
AC7
SOFTWARE
ARG B:301 , GLY B:537 , THR B:538 , CYS B:569 , ARG B:570 , SER B:599 , ARG B:600 , LYS B:605 , TYR B:607 , GLN B:609 , ARG B:636 , ASN B:637 , MET B:638 , ASP B:641 , TRP B:679 , SER B:680 , HOH B:706 , HOH B:721 , HOH B:782 , HOH B:800 , HOH B:831
BINDING SITE FOR RESIDUE NAP B 753
[
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]
SAPs(SNPs)/Variants
(11, 22)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_021154 (Y181D, chain A/B, )
02: VAR_047885 (L228L, chain A/B, )
03: VAR_047886 (D255N, chain A/B, )
04: VAR_021155 (A287P, chain A/B, )
05: VAR_021156 (R457H, chain A/B, )
06: VAR_021157 (E492E, chain A/B, )
07: VAR_004617 (V503V, chain A/B, )
08: VAR_004618 (R554Q, chain A/B, )
09: VAR_021158 (C569Y, chain A/B, )
10: VAR_021159 (Y578C, chain A/B, )
11: VAR_021160 (V608F, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_021154
Y
178
D
NCPR_HUMAN
Disease (DISPORD)
---
A/B
Y
181
D
02
UniProt
VAR_047885
P
225
L
NCPR_HUMAN
Polymorphism
---
A/B
L
228
L
03
UniProt
VAR_047886
D
252
N
NCPR_HUMAN
Polymorphism
---
A/B
D
255
N
04
UniProt
VAR_021155
A
284
P
NCPR_HUMAN
Disease (DISPORD)
---
A/B
A
287
P
05
UniProt
VAR_021156
R
454
H
NCPR_HUMAN
Disease (DISPORD)
---
A/B
R
457
H
06
UniProt
VAR_021157
V
489
E
NCPR_HUMAN
Disease (ABS1)
---
A/B
E
492
E
07
UniProt
VAR_004617
A
500
V
NCPR_HUMAN
Polymorphism
1057868
A/B
V
503
V
08
UniProt
VAR_004618
R
551
Q
NCPR_HUMAN
Polymorphism
---
A/B
R
554
Q
09
UniProt
VAR_021158
C
566
Y
NCPR_HUMAN
Disease (DISPORD)
---
A/B
C
569
Y
10
UniProt
VAR_021159
Y
575
C
NCPR_HUMAN
Disease (ABS1)
---
A/B
Y
578
C
11
UniProt
VAR_021160
V
605
F
NCPR_HUMAN
Disease (DISPORD)
---
A/B
V
608
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: FLAVODOXIN_LIKE (A:83-227,B:83-227)
2: FAD_FR (A:282-524,B:282-524)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FLAVODOXIN_LIKE
PS50902
Flavodoxin-like domain profile.
NCPR_HUMAN
80-224
2
A:83-227
B:83-227
2
FAD_FR
PS51384
Ferredoxin reductase-type FAD binding domain profile.
NCPR_HUMAN
279-521
2
A:282-524
B:282-524
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d3qfca2 (A:243-521)
1b: SCOP_d3qfcb2 (B:245-521)
2a: SCOP_d3qfca3 (A:522-680)
2b: SCOP_d3qfcb3 (B:522-680)
3a: SCOP_d3qfca1 (A:69-242)
3b: SCOP_d3qfcb1 (B:70-241)
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Protein Domains
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
NADPH-cytochrome p450 reductase FAD-binding domain-like
(16)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3qfca2
A:243-521
1b
d3qfcb2
B:245-521
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
automated matches
(36)
Protein domain
:
automated matches
(36)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d3qfca3
A:522-680
2b
d3qfcb3
B:522-680
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Flavoproteins
(208)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Human (Homo sapiens) [TaxId: 9606]
(4)
3a
d3qfca1
A:69-242
3b
d3qfcb1
B:70-241
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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