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(-) Description

Title :  WILD TYPE HUMAN CYPOR
 
Authors :  C. Xia, C. Marohnic, S. Panda, B. S. Masters, J. J. K. Kim
Date :  11 Dec 15  (Deposition) - 17 Aug 16  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cypor, Cytochrome P450 Reductase, Flavoprotein, Abs-Like Phenotype, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Mccammon, S. P. Panda, C. Xia, J. J. Kim, D. Moutinho, M. Kranendonk, R. J. Auchus, E. M. Lafer, D. Ghosh, P. Martasek, R. Kar, B. S. Masters, L. J. Roman
Instability Of The Human Cytochrome P450 Reductase A287P Variant Is The Major Contributor To Its Antley-Bixler Syndrome-Like Phenotype.
J. Biol. Chem. V. 291 20487 2016
PubMed-ID: 27496950  |  Reference-DOI: 10.1074/JBC.M116.716019

(-) Compounds

Molecule 1 - NADPH--CYTOCHROME P450 REDUCTASE
    Chains: A, B
    EC Number: 1.6.2.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A-CYPOR
    Expression System Strain: JM109(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 64-677
    Gene: POR, CYPOR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P450R
    Variant: DELTA66

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:89 , GLN A:90 , THR A:91 , GLY A:92 , THR A:93 , ALA A:94 , ALA A:141 , THR A:142 , TYR A:143 , GLY A:146 , LEU A:176 , GLY A:177 , ASN A:178 , TYR A:181 , HIS A:183 , PHE A:184 , ASN A:185 , ASP A:211 , LEU A:215binding site for residue FMN A 701
2AC2SOFTWAREARG A:427 , ARG A:457 , TYR A:458 , TYR A:459 , SER A:460 , CYS A:475 , ALA A:476 , VAL A:477 , VAL A:479 , TYR A:481 , GLY A:491 , VAL A:492 , ALA A:493 , THR A:494 , TRP A:679 , HOH A:806 , HOH A:810 , HOH A:837 , HOH A:870 , HOH A:874 , HOH A:907binding site for residue FAD A 702
3AC3SOFTWAREARG A:301 , PRO A:536 , GLY A:537 , THR A:538 , CYS A:569 , ARG A:570 , SER A:599 , ARG A:600 , LYS A:605 , TYR A:607 , GLN A:609 , ASN A:637 , MET A:638 , ASP A:641 , HOH A:823 , HOH A:832 , HOH A:920binding site for residue NAP A 703
4AC4SOFTWARESER B:89 , GLN B:90 , THR B:91 , GLY B:92 , THR B:93 , ALA B:94 , ALA B:141 , THR B:142 , TYR B:143 , GLY B:144 , GLU B:145 , GLY B:146 , LEU B:176 , GLY B:177 , ASN B:178 , TYR B:181 , HIS B:183 , PHE B:184 , ASN B:185 , LEU B:215 , FAD B:702 , HOH B:805binding site for residue FMN B 701
5AC5SOFTWAREARG B:427 , ARG B:457 , TYR B:458 , TYR B:459 , SER B:460 , CYS B:475 , ALA B:476 , VAL B:477 , VAL B:479 , TYR B:481 , GLY B:491 , VAL B:492 , ALA B:493 , THR B:494 , THR B:538 , TRP B:679 , FMN B:701 , HOH B:806 , HOH B:810binding site for residue FAD B 702
6AC6SOFTWAREARG B:301 , PRO B:536 , GLY B:537 , THR B:538 , CYS B:569 , ARG B:570 , SER B:599 , ARG B:600 , LYS B:605 , TYR B:607 , GLN B:609 , MET B:638 , ASP B:641 , HOH B:838binding site for residue NAP B 703

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FA6)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Pro A:277 -Pro A:278
2Cys A:366 -Pro A:367
3Pro B:277 -Pro B:278
4Cys B:366 -Pro B:367

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FA6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FA6)

(-) Exons   (0, 0)

(no "Exon" information available for 5FA6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:606
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhhhh.eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh............eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhhh......eeeeee..............eehhhhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhh......eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fa6 A  70 SSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQETDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHFGVEATGEESSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPARALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 680
                                    79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499   ||  514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                           503|                                                                                                                                                                           
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            509                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:602
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh...eeeeeeeee...ee...hhhhhhhhhhh.......eeeeeeee.......hhhhhhhhhhhhhh..ee....eeee...hhhhhhhhhhhhhhhhhhhhhh........eeeee....hhhhh.......................eeeeeeeeee........eeeeeee............eeee....hhhhhhhhhhh.......eeeeee..............eehhhhhhh........hhhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhh.....eeee..........eeeeeee..eee.....eeehhhhhhhhh......eeeeeee.............eeee.hhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fa6 B  70 SSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQETDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEHFGVEATSIRQYELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPARALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 680
                                    79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239|      253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503|      518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678  
                                                                                                                                                                                                   239|                                                                                                                                                                                                                                                                503|                                                                                                                                                                           
                                                                                                                                                                                                    244                                                                                                                                                                                                                                                                 509
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FA6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FA6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FA6)

(-) Gene Ontology  (44, 44)

Asymmetric Unit(hide GO term definitions)

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        NCPR_HUMAN | P16435: 1b1c 3fjo 3qe2 3qfc 3qfr 3qfs 3qft 5emn

(-) Related Entries Specified in the PDB File

3qe2 THIS IS THE TRUE WILD TYPE HUMAN CYPOR, WHILE 3QE2 CONTAINS P228L AND A503V MUTATIONS.