3PKJ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Title :   HUMAN SIRT6 CRYSTAL STRUCTURE IN COMPLEX WITH 2'-N-ACETYL ADP RIBOSE

Authors :   P. W. Pan, A. Dong, W. Qiu, P. Loppnau, J. Wang, M. Ravichandran, J. R. Wal C. Bountra, J. Weigelt, C. H. Arrowsmith, J. Min, A. M. Edwards, Struct Genomics Consortium (Sgc)

Date :   11 Nov 10 (Deposition) - 26 Jan 11 (Release) - 01 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.12

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: A (1x),B (1x),C (1x),D (1x),E (1x),F (1x)

Keywords :   Rossmann Fold, Zn-Binding Domain, Structural Genomics, Structural Genomics Consortium, Sgc, Adp-Ribosylation, 2'-N-Acetyl Adp Ribose, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. W. Pan, J. L. Feldman, M. K. Devries, A. Dong, A. M. Edwards, J. M. Denu
Structure And Biochemical Functions Of Sirt6.
J. Biol. Chem. V. 286 14575 2011
PubMed-ID: 21362626 | Reference-DOI: 10.1074/JBC.M111.218990

Molecule 1 - NAD-DEPENDENT DEACETYLASE SIRTUIN-6
	Chains	:	A, B, C, D, E, F
	EC Number	:	3.5.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28-LIC
	Expression System Strain	:	BL21(DE3) CODON(+) PRARE
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	SIRT6, SIR2L6
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	SIR2-LIKE PROTEIN 6

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)	E (1x)	F (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 59)

No.	Name	Count	Type	Full Name
1	A2N	6	Ligand/Ion	[(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
2	SO4	12	Ligand/Ion	SULFATE ION
3	UNX	35	Ligand/Ion	UNKNOWN ATOM OR ION
4	ZN	6	Ligand/Ion	ZINC ION

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	A2N	1	Ligand/Ion	[(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
2	SO4	1	Ligand/Ion	SULFATE ION
3	UNX	3	Ligand/Ion	UNKNOWN ATOM OR ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (3, 9)

No.	Name	Count	Type	Full Name
1	A2N	1	Ligand/Ion	[(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
2	SO4	3	Ligand/Ion	SULFATE ION
3	UNX	5	Ligand/Ion	UNKNOWN ATOM OR ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (3, 14)

No.	Name	Count	Type	Full Name
1	A2N	1	Ligand/Ion	[(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
2	SO4	1	Ligand/Ion	SULFATE ION
3	UNX	12	Ligand/Ion	UNKNOWN ATOM OR ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (3, 5)

No.	Name	Count	Type	Full Name
1	A2N	1	Ligand/Ion	[(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
2	SO4	1	Ligand/Ion	SULFATE ION
3	UNX	3	Ligand/Ion	UNKNOWN ATOM OR ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (3, 8)

No.	Name	Count	Type	Full Name
1	A2N	1	Ligand/Ion	[(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
2	SO4	3	Ligand/Ion	SULFATE ION
3	UNX	4	Ligand/Ion	UNKNOWN ATOM OR ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 6 (3, 12)

No.	Name	Count	Type	Full Name
1	A2N	1	Ligand/Ion	[(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
2	SO4	3	Ligand/Ion	SULFATE ION
3	UNX	8	Ligand/Ion	UNKNOWN ATOM OR ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 7 (0, 0)

No.	Name	Count	Type	Full Name
1	A2N	-1	Ligand/Ion	[(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
2	SO4	-1	Ligand/Ion	SULFATE ION
3	UNX	-1	Ligand/Ion	UNKNOWN ATOM OR ION
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:50 , ALA A:51 , GLY A:52 , THR A:55 , ASP A:61 , PHE A:62 , ARG A:63 , TRP A:69 , GLN A:111 , HIS A:131 , LEU A:184 , TRP A:186 , GLY A:212 , THR A:213 , SER A:214 , ILE A:217 , ASN A:238 , LEU A:239 , GLN A:240 , GLY A:254 , TYR A:255 , VAL A:256 , HOH A:428	BINDING SITE FOR RESIDUE A2N A 1000
02	AC2	SOFTWARE	CYS A:139 , CYS A:142 , CYS A:164 , CYS A:175	BINDING SITE FOR RESIDUE ZN A 354
03	AC3	SOFTWARE	LYS A:31 , ARG A:251 , HIS A:253	BINDING SITE FOR RESIDUE SO4 A 1008
04	AC4	SOFTWARE	GLY B:50 , ALA B:51 , GLY B:52 , THR B:55 , ASP B:61 , PHE B:62 , ARG B:63 , TRP B:69 , GLN B:111 , HIS B:131 , LEU B:184 , GLY B:212 , THR B:213 , SER B:214 , ILE B:217 , ASN B:238 , LEU B:239 , GLN B:240 , GLY B:254 , TYR B:255 , VAL B:256 , HOH B:406 , HOH B:422	BINDING SITE FOR RESIDUE A2N B 1000
05	AC5	SOFTWARE	CYS B:139 , CYS B:142 , CYS B:164 , CYS B:175	BINDING SITE FOR RESIDUE ZN B 354
06	AC6	SOFTWARE	HIS B:66 , ARG B:74 , LEU E:76 , ALA E:77	BINDING SITE FOR RESIDUE SO4 B 1005
07	AC7	SOFTWARE	LYS B:31 , ARG B:251 , HIS B:253 , HOH B:412 , ASP C:12	BINDING SITE FOR RESIDUE SO4 B 1006
08	AC8	SOFTWARE	ARG A:106 , ARG B:229 , ARG B:230 , HOH B:399	BINDING SITE FOR RESIDUE SO4 B 1011
09	AC9	SOFTWARE	GLY C:50 , ALA C:51 , GLY C:52 , THR C:55 , ASP C:61 , PHE C:62 , ARG C:63 , TRP C:69 , GLN C:111 , HIS C:131 , LEU C:184 , GLY C:212 , THR C:213 , SER C:214 , ILE C:217 , ASN C:238 , LEU C:239 , GLN C:240 , GLY C:254 , TYR C:255 , VAL C:256 , HOH C:383 , HOH C:403	BINDING SITE FOR RESIDUE A2N C 1000
10	BC1	SOFTWARE	CYS C:139 , CYS C:142 , CYS C:164 , CYS C:175	BINDING SITE FOR RESIDUE ZN C 354
11	BC2	SOFTWARE	ARG C:218 , PRO C:219 , ASN C:222 , HOH C:422 , HOH C:512	BINDING SITE FOR RESIDUE SO4 C 1003
12	BC3	SOFTWARE	GLY D:50 , ALA D:51 , GLY D:52 , THR D:55 , ASP D:61 , PHE D:62 , ARG D:63 , TRP D:69 , GLN D:111 , HIS D:131 , GLY D:212 , THR D:213 , SER D:214 , ILE D:217 , ASN D:238 , LEU D:239 , GLN D:240 , GLY D:254 , TYR D:255 , VAL D:256	BINDING SITE FOR RESIDUE A2N D 1000
13	BC4	SOFTWARE	CYS D:139 , CYS D:142 , CYS D:164 , ARG D:176	BINDING SITE FOR RESIDUE ZN D 354
14	BC5	SOFTWARE	HIS D:66 , LYS D:79 , HOH D:377 , HOH D:386	BINDING SITE FOR RESIDUE SO4 D 355
15	BC6	SOFTWARE	ASP B:81 , GLY E:50 , ALA E:51 , GLY E:52 , THR E:55 , ASP E:61 , PHE E:62 , ARG E:63 , TRP E:69 , GLN E:111 , HIS E:131 , GLY E:212 , THR E:213 , SER E:214 , ASN E:238 , LEU E:239 , GLN E:240 , GLY E:254 , TYR E:255 , VAL E:256	BINDING SITE FOR RESIDUE A2N E 1000
16	BC7	SOFTWARE	CYS E:139 , CYS E:142 , CYS E:164 , CYS E:175	BINDING SITE FOR RESIDUE ZN E 354
17	BC8	SOFTWARE	HIS B:66 , LYS B:79 , HIS E:66 , LYS E:79	BINDING SITE FOR RESIDUE SO4 E 1002
18	BC9	SOFTWARE	GLU E:27 , LYS E:31 , ARG E:251 , HIS E:253	BINDING SITE FOR RESIDUE SO4 E 1007
19	CC1	SOFTWARE	ARG E:162	BINDING SITE FOR RESIDUE SO4 E 1010
20	CC2	SOFTWARE	GLY F:50 , ALA F:51 , GLY F:52 , THR F:55 , ASP F:61 , PHE F:62 , ARG F:63 , TRP F:69 , GLN F:111 , HIS F:131 , GLY F:212 , THR F:213 , SER F:214 , ASN F:238 , LEU F:239 , GLN F:240 , GLY F:254 , TYR F:255 , VAL F:256	BINDING SITE FOR RESIDUE A2N F 1000
21	CC3	SOFTWARE	CYS F:139 , CYS F:142 , CYS F:164 , CYS F:175	BINDING SITE FOR RESIDUE ZN F 354
22	CC4	SOFTWARE	THR F:83 , PHE F:84 , GLU F:85 , VAL F:151 , HOH F:416	BINDING SITE FOR RESIDUE SO4 F 1001
23	CC5	SOFTWARE	VAL F:151 , GLY F:153 , ARG F:162	BINDING SITE FOR RESIDUE SO4 F 1004
24	CC6	SOFTWARE	HIS F:66 , LYS F:79	BINDING SITE FOR RESIDUE SO4 F 1009

(no "SS Bond" information available for 3PKJ)

Asymmetric Unit

No.	Residues
1	Arg A:218	-	Pro A:219
2	Arg B:218	-	Pro B:219
3	Arg C:218	-	Pro C:219
4	Arg D:218	-	Pro D:219
5	Arg E:218	-	Pro E:219
6	Arg F:218	-	Pro F:219

Asymmetric Unit (1, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_017154	S	46	N	SIR6_HUMAN	Polymorphism	352493	A/B/C/D/E/F	S	44	N

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_017154	S	46	N	SIR6_HUMAN	Polymorphism	352493	A	S	44	N

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_017154	S	46	N	SIR6_HUMAN	Polymorphism	352493	B	S	44	N

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_017154	S	46	N	SIR6_HUMAN	Polymorphism	352493	C	S	44	N

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_017154	S	46	N	SIR6_HUMAN	Polymorphism	352493	D	S	44	N

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_017154	S	46	N	SIR6_HUMAN	Polymorphism	352493	E	S	44	N

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 6 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_017154	S	46	N	SIR6_HUMAN	Polymorphism	352493	F	S	44	N

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 7 (1, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_017154	S	46	N	SIR6_HUMAN	Polymorphism	352493	A/B/C/D/E/F	S	44	N

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIRTUIN	PS50305	Sirtuin catalytic domain profile.	SIR6_HUMAN	35-274	6	A:33-272 B:33-272 C:33-272 D:33-272 E:33-272 F:33-272

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIRTUIN	PS50305	Sirtuin catalytic domain profile.	SIR6_HUMAN	35-274	1	A:33-272 - - - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIRTUIN	PS50305	Sirtuin catalytic domain profile.	SIR6_HUMAN	35-274	1	- B:33-272 - - - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIRTUIN	PS50305	Sirtuin catalytic domain profile.	SIR6_HUMAN	35-274	1	- - C:33-272 - - -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIRTUIN	PS50305	Sirtuin catalytic domain profile.	SIR6_HUMAN	35-274	1	- - - D:33-272 - -

Biological Unit 5 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIRTUIN	PS50305	Sirtuin catalytic domain profile.	SIR6_HUMAN	35-274	1	- - - - E:33-272 -

Biological Unit 6 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIRTUIN	PS50305	Sirtuin catalytic domain profile.	SIR6_HUMAN	35-274	1	- - - - - F:33-272

Biological Unit 7 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SIRTUIN	PS50305	Sirtuin catalytic domain profile.	SIR6_HUMAN	35-274	6	A:33-272 B:33-272 C:33-272 D:33-272 E:33-272 F:33-272

(no "Exon" information available for 3PKJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:277
 aligned with SIR6_HUMAN | Q8N6T7 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:284
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292    
           SIR6_HUMAN    13 ADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPRPPTPK 296
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhh........hhhhhhhh...............hhhhhhhhhhhhh....eeee....hhhhhh..hhh.eee......eeee.....eee...........eeeee...-------....eeee.........hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhh...eeeee......hhhhh.eee..hhhhhhhhhhhhhh.......................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------N---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------SIRTUIN  PDB: A:33-272 UniProt: 35-274                                                                                                                                                                                                          ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkj A  11 ADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTV-------ACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDGPRVLERALPPLPRPPTPK 294
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     |   -   |   180       190       200       210       220       230       240       250       260       270       280       290    
                                                                                                                                                                                     166     174

Chain B from PDB  Type:PROTEIN  Length:280
 aligned with SIR6_HUMAN | Q8N6T7 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:284
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292    
           SIR6_HUMAN    13 ADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPRPPTPK 296
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhh........hhhhhhhh...............hhhhhhhhhhhhh....eeee....hhhhhh..hhh.eee......eeee.....eee...........eeeee.....----.....eeee.........hhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhh.eeeee......hhhhh.eee..hhhhhhhhhhhhhh.......................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------N---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------SIRTUIN  PDB: B:33-272 UniProt: 35-274                                                                                                                                                                                                          ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkj B  11 ADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAK----RACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDGPRVLERALPPLPRPPTPK 294
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       | -  |    180       190       200       210       220       230       240       250       260       270       280       290    
                                                                                                                                                                                       168  173

Chain C from PDB  Type:PROTEIN  Length:276
 aligned with SIR6_HUMAN | Q8N6T7 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:283
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293   
           SIR6_HUMAN    14 DKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPRPPTPK 296
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhh........hhhhhhhh...............hhhhhhhhhhhhh....eeee....hhhhhh..hhh.eee......eeee.....eee...........eeeee....-------...eeee.........hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhh...eeeee......hhhhh.eee..hhhhhhhhhhhhhh.......................... Sec.struct. author
                 SAPs(SNPs) --------------------------------N---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------SIRTUIN  PDB: C:33-272 UniProt: 35-274                                                                                                                                                                                                          ---------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkj C  12 DKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVA-------CRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDGPRVLERALPPLPRPPTPK 294
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161     |   -   |   181       191       201       211       221       231       241       251       261       271       281       291   
                                                                                                                                                                                     167     175

Chain D from PDB  Type:PROTEIN  Length:276
 aligned with SIR6_HUMAN | Q8N6T7 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:282
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295  
           SIR6_HUMAN    16 GKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPRPPTPKL 297
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhh........hhhhhhhh...............hhhhhhhhhhhhh....eeee....hhhhhh..hhh.eee......eeee.....eee...........eeeee......------..eeee.........hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhh.eeeee......hhhhh.eee..hhhhhhhhhhhhhh........................... Sec.struct. author
                 SAPs(SNPs) ------------------------------N----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------SIRTUIN  PDB: D:33-272 UniProt: 35-274                                                                                                                                                                                                          ----------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3pkj D  14 GKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKA------RGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDGPRVLERALPPLPRPPTPKL 295
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163     |   -  |    183       193       203       213       223       233       243       253       263       273       283       293  
                                                                                                                                                                                     169    176

Chain E from PDB  Type:PROTEIN  Length:278
 aligned with SIR6_HUMAN | Q8N6T7 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:284
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292    
           SIR6_HUMAN    13 ADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPRPPTPK 296
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhh........hhhhhhhh...............hhhhhhhhhhhhh....eeee....hhhhhh..hhh.eee......eeee.....eee...........eeeee....------....eeee.........hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhh..eeeee......hhhhh.eee..hhhhhhhhhhhhhh.......................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------N---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------SIRTUIN  PDB: E:33-272 UniProt: 35-274                                                                                                                                                                                                          ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkj E  11 ADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVA------ACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDGPRVLERALPPLPRPPTPK 294
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      |  -   |   180       190       200       210       220       230       240       250       260       270       280       290    
                                                                                                                                                                                      167    174

Chain F from PDB  Type:PROTEIN  Length:277
 aligned with SIR6_HUMAN | Q8N6T7 from UniProtKB/Swiss-Prot  Length:355

    Alignment length:284
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292    
           SIR6_HUMAN    13 ADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPRPPTPK 296
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhh..eeeee.hhhhh...........hhhhhhhh...............hhhhhhhhhhhhh....eeee....hhhhhh..hhh.eee......eeee.....eee...........eeeee...-------....eeee.........hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhh..eeeee......hhhhh.eee..hhhhhhhhhhhhhh.......................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------N---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------SIRTUIN  PDB: F:33-272 UniProt: 35-274                                                                                                                                                                                                          ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkj F  11 ADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTV-------ACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDGPRVLERALPPLPRPPTPK 294
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     |   -   |   180       190       200       210       220       230       240       250       260       270       280       290    
                                                                                                                                                                                     166     174

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3PKJ)

(no "CATH Domain" information available for 3PKJ)

(no "Pfam Domain" information available for 3PKJ)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (SIR6_HUMAN | Q8N6T7)

molecular function
	GO:0003956	NAD(P)+-protein-arginine ADP-ribosyltransferase activity	Catalysis of the reaction: NAD(P)+ + L-arginine = nicotinamide + N2-(ADP-D-ribosyl)-L-arginine.
	GO:0003950	NAD+ ADP-ribosyltransferase activity	Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor.
	GO:0070403	NAD+ binding	Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
	GO:0017136	NAD-dependent histone deacetylase activity	Catalysis of the reaction: histone N6-acetyl-L-lysine + H2O = histone L-lysine + acetate. This reaction requires the presence of NAD, and represents the removal of an acetyl group from a histone.
	GO:0046969	NAD-dependent histone deacetylase activity (H3-K9 specific)	Catalysis of the reaction: histone H3 N6-acetyl-L-lysine (position 9) + H2O = histone H3 L-lysine (position 9) + acetate. This reaction requires the presence of NAD, and represents the removal of an acetyl group from lysine at position 9 of the histone H3 protein.
	GO:0034979	NAD-dependent protein deacetylase activity	Catalysis of the removal of one or more acetyl groups from a protein, requiring NAD.
	GO:0003682	chromatin binding	Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0033558	protein deacetylase activity	Catalysis of the hydrolysis of an acetyl group or groups from a protein substrate.
	GO:0003714	transcription corepressor activity	Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0006284	base-excision repair	In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
	GO:0042593	glucose homeostasis	Any process involved in the maintenance of an internal steady state of glucose within an organism or cell.
	GO:1990619	histone H3-K9 deacetylation	The modification of histone H3 by the removal of an acetyl group from lysine at position 9 of the histone.
	GO:0061647	histone H3-K9 modification	The modification of histone H3 at a lysine in position 9 of the histone.
	GO:0016575	histone deacetylation	The modification of histones by removal of acetyl groups.
	GO:0008285	negative regulation of cell proliferation	Any process that stops, prevents or reduces the rate or extent of cell proliferation.
	GO:0046325	negative regulation of glucose import	Any process that stops, prevents, or reduces the frequency, rate or extent of the import of the hexose monosaccharide glucose into a cell or organelle.
	GO:0045820	negative regulation of glycolytic process	Any process that stops, prevents, or reduces the frequency, rate or extent of glycolysis.
	GO:0045892	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0048146	positive regulation of fibroblast proliferation	Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells.
	GO:2000648	positive regulation of stem cell proliferation	Any process that activates or increases the frequency, rate or extent of stem cell proliferation.
	GO:0003247	post-embryonic cardiac muscle cell growth involved in heart morphogenesis	The growth of a cardiac muscle cell during the postembryonic period that contributes to the shaping of the heart.
	GO:0006471	protein ADP-ribosylation	The transfer, from NAD, of ADP-ribose to protein amino acids.
	GO:0006476	protein deacetylation	The removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid.
	GO:0031648	protein destabilization	Any process that decreases the stability of a protein, making it more vulnerable to degradative processes or aggregation.
	GO:0010569	regulation of double-strand break repair via homologous recombination	Any process that modulates the frequency, rate or extent of the error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences.
	GO:0031667	response to nutrient levels	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005724	nuclear telomeric heterochromatin	Heterochromatic regions of the chromosome found at the telomeres of a chromosome in the nucleus.
	GO:0005730	nucleolus	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	3pkj
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	SIR6_HUMAN \| Q8N6T7	:	3k35 3pki 3zg6 5mf6 5mfp 5mfz 5mgn

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 59)

Sites (24, 24)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 6)

PROSITE Motifs (1, 6)

Exons (0, 0)

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