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3PKJ
Biol. Unit 7
Info
Asym.Unit (278 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (49 KB)
Biol.Unit 4 (49 KB)
Biol.Unit 5 (49 KB)
Biol.Unit 6 (49 KB)
Biol.Unit 7 (269 KB)
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(1)
Title
:
HUMAN SIRT6 CRYSTAL STRUCTURE IN COMPLEX WITH 2'-N-ACETYL ADP RIBOSE
Authors
:
P. W. Pan, A. Dong, W. Qiu, P. Loppnau, J. Wang, M. Ravichandran, J. R. Wal C. Bountra, J. Weigelt, C. H. Arrowsmith, J. Min, A. M. Edwards, Struct Genomics Consortium (Sgc)
Date
:
11 Nov 10 (Deposition) - 26 Jan 11 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.12
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: A,B,C,D,E,F (1x)
Keywords
:
Rossmann Fold, Zn-Binding Domain, Structural Genomics, Structural Genomics Consortium, Sgc, Adp-Ribosylation, 2'-N-Acetyl Adp Ribose, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. W. Pan, J. L. Feldman, M. K. Devries, A. Dong, A. M. Edwards, J. M. Denu
Structure And Biochemical Functions Of Sirt6.
J. Biol. Chem. V. 286 14575 2011
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: [(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5... (A2Na)
1b: [(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5... (A2Nb)
1c: [(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5... (A2Nc)
1d: [(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5... (A2Nd)
1e: [(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5... (A2Ne)
1f: [(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5... (A2Nf)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
3a: UNKNOWN ATOM OR ION (UNXa)
3aa: UNKNOWN ATOM OR ION (UNXaa)
3ab: UNKNOWN ATOM OR ION (UNXab)
3ac: UNKNOWN ATOM OR ION (UNXac)
3ad: UNKNOWN ATOM OR ION (UNXad)
3ae: UNKNOWN ATOM OR ION (UNXae)
3af: UNKNOWN ATOM OR ION (UNXaf)
3ag: UNKNOWN ATOM OR ION (UNXag)
3ah: UNKNOWN ATOM OR ION (UNXah)
3ai: UNKNOWN ATOM OR ION (UNXai)
3b: UNKNOWN ATOM OR ION (UNXb)
3c: UNKNOWN ATOM OR ION (UNXc)
3d: UNKNOWN ATOM OR ION (UNXd)
3e: UNKNOWN ATOM OR ION (UNXe)
3f: UNKNOWN ATOM OR ION (UNXf)
3g: UNKNOWN ATOM OR ION (UNXg)
3h: UNKNOWN ATOM OR ION (UNXh)
3i: UNKNOWN ATOM OR ION (UNXi)
3j: UNKNOWN ATOM OR ION (UNXj)
3k: UNKNOWN ATOM OR ION (UNXk)
3l: UNKNOWN ATOM OR ION (UNXl)
3m: UNKNOWN ATOM OR ION (UNXm)
3n: UNKNOWN ATOM OR ION (UNXn)
3o: UNKNOWN ATOM OR ION (UNXo)
3p: UNKNOWN ATOM OR ION (UNXp)
3q: UNKNOWN ATOM OR ION (UNXq)
3r: UNKNOWN ATOM OR ION (UNXr)
3s: UNKNOWN ATOM OR ION (UNXs)
3t: UNKNOWN ATOM OR ION (UNXt)
3u: UNKNOWN ATOM OR ION (UNXu)
3v: UNKNOWN ATOM OR ION (UNXv)
3w: UNKNOWN ATOM OR ION (UNXw)
3x: UNKNOWN ATOM OR ION (UNXx)
3y: UNKNOWN ATOM OR ION (UNXy)
3z: UNKNOWN ATOM OR ION (UNXz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:50 , ALA A:51 , GLY A:52 , THR A:55 , ASP A:61 , PHE A:62 , ARG A:63 , TRP A:69 , GLN A:111 , HIS A:131 , LEU A:184 , TRP A:186 , GLY A:212 , THR A:213 , SER A:214 , ILE A:217 , ASN A:238 , LEU A:239 , GLN A:240 , GLY A:254 , TYR A:255 , VAL A:256 , HOH A:428
BINDING SITE FOR RESIDUE A2N A 1000
02
AC2
SOFTWARE
CYS A:139 , CYS A:142 , CYS A:164 , CYS A:175
BINDING SITE FOR RESIDUE ZN A 354
03
AC3
SOFTWARE
LYS A:31 , ARG A:251 , HIS A:253
BINDING SITE FOR RESIDUE SO4 A 1008
04
AC4
SOFTWARE
GLY B:50 , ALA B:51 , GLY B:52 , THR B:55 , ASP B:61 , PHE B:62 , ARG B:63 , TRP B:69 , GLN B:111 , HIS B:131 , LEU B:184 , GLY B:212 , THR B:213 , SER B:214 , ILE B:217 , ASN B:238 , LEU B:239 , GLN B:240 , GLY B:254 , TYR B:255 , VAL B:256 , HOH B:406 , HOH B:422
BINDING SITE FOR RESIDUE A2N B 1000
05
AC5
SOFTWARE
CYS B:139 , CYS B:142 , CYS B:164 , CYS B:175
BINDING SITE FOR RESIDUE ZN B 354
06
AC6
SOFTWARE
HIS B:66 , ARG B:74 , LEU E:76 , ALA E:77
BINDING SITE FOR RESIDUE SO4 B 1005
07
AC7
SOFTWARE
LYS B:31 , ARG B:251 , HIS B:253 , HOH B:412 , ASP C:12
BINDING SITE FOR RESIDUE SO4 B 1006
08
AC8
SOFTWARE
ARG A:106 , ARG B:229 , ARG B:230 , HOH B:399
BINDING SITE FOR RESIDUE SO4 B 1011
09
AC9
SOFTWARE
GLY C:50 , ALA C:51 , GLY C:52 , THR C:55 , ASP C:61 , PHE C:62 , ARG C:63 , TRP C:69 , GLN C:111 , HIS C:131 , LEU C:184 , GLY C:212 , THR C:213 , SER C:214 , ILE C:217 , ASN C:238 , LEU C:239 , GLN C:240 , GLY C:254 , TYR C:255 , VAL C:256 , HOH C:383 , HOH C:403
BINDING SITE FOR RESIDUE A2N C 1000
10
BC1
SOFTWARE
CYS C:139 , CYS C:142 , CYS C:164 , CYS C:175
BINDING SITE FOR RESIDUE ZN C 354
11
BC2
SOFTWARE
ARG C:218 , PRO C:219 , ASN C:222 , HOH C:422 , HOH C:512
BINDING SITE FOR RESIDUE SO4 C 1003
12
BC3
SOFTWARE
GLY D:50 , ALA D:51 , GLY D:52 , THR D:55 , ASP D:61 , PHE D:62 , ARG D:63 , TRP D:69 , GLN D:111 , HIS D:131 , GLY D:212 , THR D:213 , SER D:214 , ILE D:217 , ASN D:238 , LEU D:239 , GLN D:240 , GLY D:254 , TYR D:255 , VAL D:256
BINDING SITE FOR RESIDUE A2N D 1000
13
BC4
SOFTWARE
CYS D:139 , CYS D:142 , CYS D:164 , ARG D:176
BINDING SITE FOR RESIDUE ZN D 354
14
BC5
SOFTWARE
HIS D:66 , LYS D:79 , HOH D:377 , HOH D:386
BINDING SITE FOR RESIDUE SO4 D 355
15
BC6
SOFTWARE
ASP B:81 , GLY E:50 , ALA E:51 , GLY E:52 , THR E:55 , ASP E:61 , PHE E:62 , ARG E:63 , TRP E:69 , GLN E:111 , HIS E:131 , GLY E:212 , THR E:213 , SER E:214 , ASN E:238 , LEU E:239 , GLN E:240 , GLY E:254 , TYR E:255 , VAL E:256
BINDING SITE FOR RESIDUE A2N E 1000
16
BC7
SOFTWARE
CYS E:139 , CYS E:142 , CYS E:164 , CYS E:175
BINDING SITE FOR RESIDUE ZN E 354
17
BC8
SOFTWARE
HIS B:66 , LYS B:79 , HIS E:66 , LYS E:79
BINDING SITE FOR RESIDUE SO4 E 1002
18
BC9
SOFTWARE
GLU E:27 , LYS E:31 , ARG E:251 , HIS E:253
BINDING SITE FOR RESIDUE SO4 E 1007
19
CC1
SOFTWARE
ARG E:162
BINDING SITE FOR RESIDUE SO4 E 1010
20
CC2
SOFTWARE
GLY F:50 , ALA F:51 , GLY F:52 , THR F:55 , ASP F:61 , PHE F:62 , ARG F:63 , TRP F:69 , GLN F:111 , HIS F:131 , GLY F:212 , THR F:213 , SER F:214 , ASN F:238 , LEU F:239 , GLN F:240 , GLY F:254 , TYR F:255 , VAL F:256
BINDING SITE FOR RESIDUE A2N F 1000
21
CC3
SOFTWARE
CYS F:139 , CYS F:142 , CYS F:164 , CYS F:175
BINDING SITE FOR RESIDUE ZN F 354
22
CC4
SOFTWARE
THR F:83 , PHE F:84 , GLU F:85 , VAL F:151 , HOH F:416
BINDING SITE FOR RESIDUE SO4 F 1001
23
CC5
SOFTWARE
VAL F:151 , GLY F:153 , ARG F:162
BINDING SITE FOR RESIDUE SO4 F 1004
24
CC6
SOFTWARE
HIS F:66 , LYS F:79
BINDING SITE FOR RESIDUE SO4 F 1009
[
close Site info
]
SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_017154 (S44N, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_017154
S
46
N
SIR6_HUMAN
Polymorphism
352493
A/B/C/D/E/F
S
44
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: SIRTUIN (A:33-272,B:33-272,C:33-272,D:33-27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIRTUIN
PS50305
Sirtuin catalytic domain profile.
SIR6_HUMAN
35-274
6
A:33-272
B:33-272
C:33-272
D:33-272
E:33-272
F:33-272
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 2
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Biol.Unit 3 (49 KB)
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