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3PKJ
Asym. Unit
Info
Asym.Unit (278 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (49 KB)
Biol.Unit 4 (49 KB)
Biol.Unit 5 (49 KB)
Biol.Unit 6 (49 KB)
Biol.Unit 7 (269 KB)
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(1)
Title
:
HUMAN SIRT6 CRYSTAL STRUCTURE IN COMPLEX WITH 2'-N-ACETYL ADP RIBOSE
Authors
:
P. W. Pan, A. Dong, W. Qiu, P. Loppnau, J. Wang, M. Ravichandran, J. R. Wal C. Bountra, J. Weigelt, C. H. Arrowsmith, J. Min, A. M. Edwards, Struct Genomics Consortium (Sgc)
Date
:
11 Nov 10 (Deposition) - 26 Jan 11 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.12
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: A,B,C,D,E,F (1x)
Keywords
:
Rossmann Fold, Zn-Binding Domain, Structural Genomics, Structural Genomics Consortium, Sgc, Adp-Ribosylation, 2'-N-Acetyl Adp Ribose, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. W. Pan, J. L. Feldman, M. K. Devries, A. Dong, A. M. Edwards, J. M. Denu
Structure And Biochemical Functions Of Sirt6.
J. Biol. Chem. V. 286 14575 2011
[
close entry info
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Hetero Components
(4, 59)
Info
All Hetero Components
1a: [(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5... (A2Na)
1b: [(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5... (A2Nb)
1c: [(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5... (A2Nc)
1d: [(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5... (A2Nd)
1e: [(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5... (A2Ne)
1f: [(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5... (A2Nf)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
3a: UNKNOWN ATOM OR ION (UNXa)
3aa: UNKNOWN ATOM OR ION (UNXaa)
3ab: UNKNOWN ATOM OR ION (UNXab)
3ac: UNKNOWN ATOM OR ION (UNXac)
3ad: UNKNOWN ATOM OR ION (UNXad)
3ae: UNKNOWN ATOM OR ION (UNXae)
3af: UNKNOWN ATOM OR ION (UNXaf)
3ag: UNKNOWN ATOM OR ION (UNXag)
3ah: UNKNOWN ATOM OR ION (UNXah)
3ai: UNKNOWN ATOM OR ION (UNXai)
3b: UNKNOWN ATOM OR ION (UNXb)
3c: UNKNOWN ATOM OR ION (UNXc)
3d: UNKNOWN ATOM OR ION (UNXd)
3e: UNKNOWN ATOM OR ION (UNXe)
3f: UNKNOWN ATOM OR ION (UNXf)
3g: UNKNOWN ATOM OR ION (UNXg)
3h: UNKNOWN ATOM OR ION (UNXh)
3i: UNKNOWN ATOM OR ION (UNXi)
3j: UNKNOWN ATOM OR ION (UNXj)
3k: UNKNOWN ATOM OR ION (UNXk)
3l: UNKNOWN ATOM OR ION (UNXl)
3m: UNKNOWN ATOM OR ION (UNXm)
3n: UNKNOWN ATOM OR ION (UNXn)
3o: UNKNOWN ATOM OR ION (UNXo)
3p: UNKNOWN ATOM OR ION (UNXp)
3q: UNKNOWN ATOM OR ION (UNXq)
3r: UNKNOWN ATOM OR ION (UNXr)
3s: UNKNOWN ATOM OR ION (UNXs)
3t: UNKNOWN ATOM OR ION (UNXt)
3u: UNKNOWN ATOM OR ION (UNXu)
3v: UNKNOWN ATOM OR ION (UNXv)
3w: UNKNOWN ATOM OR ION (UNXw)
3x: UNKNOWN ATOM OR ION (UNXx)
3y: UNKNOWN ATOM OR ION (UNXy)
3z: UNKNOWN ATOM OR ION (UNXz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A2N
6
Ligand/Ion
[(2R,3S,4R,5R)-4-(ACETYLAMINO)-3,5-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE
2
SO4
12
Ligand/Ion
SULFATE ION
3
UNX
35
Ligand/Ion
UNKNOWN ATOM OR ION
4
ZN
6
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:50 , ALA A:51 , GLY A:52 , THR A:55 , ASP A:61 , PHE A:62 , ARG A:63 , TRP A:69 , GLN A:111 , HIS A:131 , LEU A:184 , TRP A:186 , GLY A:212 , THR A:213 , SER A:214 , ILE A:217 , ASN A:238 , LEU A:239 , GLN A:240 , GLY A:254 , TYR A:255 , VAL A:256 , HOH A:428
BINDING SITE FOR RESIDUE A2N A 1000
02
AC2
SOFTWARE
CYS A:139 , CYS A:142 , CYS A:164 , CYS A:175
BINDING SITE FOR RESIDUE ZN A 354
03
AC3
SOFTWARE
LYS A:31 , ARG A:251 , HIS A:253
BINDING SITE FOR RESIDUE SO4 A 1008
04
AC4
SOFTWARE
GLY B:50 , ALA B:51 , GLY B:52 , THR B:55 , ASP B:61 , PHE B:62 , ARG B:63 , TRP B:69 , GLN B:111 , HIS B:131 , LEU B:184 , GLY B:212 , THR B:213 , SER B:214 , ILE B:217 , ASN B:238 , LEU B:239 , GLN B:240 , GLY B:254 , TYR B:255 , VAL B:256 , HOH B:406 , HOH B:422
BINDING SITE FOR RESIDUE A2N B 1000
05
AC5
SOFTWARE
CYS B:139 , CYS B:142 , CYS B:164 , CYS B:175
BINDING SITE FOR RESIDUE ZN B 354
06
AC6
SOFTWARE
HIS B:66 , ARG B:74 , LEU E:76 , ALA E:77
BINDING SITE FOR RESIDUE SO4 B 1005
07
AC7
SOFTWARE
LYS B:31 , ARG B:251 , HIS B:253 , HOH B:412 , ASP C:12
BINDING SITE FOR RESIDUE SO4 B 1006
08
AC8
SOFTWARE
ARG A:106 , ARG B:229 , ARG B:230 , HOH B:399
BINDING SITE FOR RESIDUE SO4 B 1011
09
AC9
SOFTWARE
GLY C:50 , ALA C:51 , GLY C:52 , THR C:55 , ASP C:61 , PHE C:62 , ARG C:63 , TRP C:69 , GLN C:111 , HIS C:131 , LEU C:184 , GLY C:212 , THR C:213 , SER C:214 , ILE C:217 , ASN C:238 , LEU C:239 , GLN C:240 , GLY C:254 , TYR C:255 , VAL C:256 , HOH C:383 , HOH C:403
BINDING SITE FOR RESIDUE A2N C 1000
10
BC1
SOFTWARE
CYS C:139 , CYS C:142 , CYS C:164 , CYS C:175
BINDING SITE FOR RESIDUE ZN C 354
11
BC2
SOFTWARE
ARG C:218 , PRO C:219 , ASN C:222 , HOH C:422 , HOH C:512
BINDING SITE FOR RESIDUE SO4 C 1003
12
BC3
SOFTWARE
GLY D:50 , ALA D:51 , GLY D:52 , THR D:55 , ASP D:61 , PHE D:62 , ARG D:63 , TRP D:69 , GLN D:111 , HIS D:131 , GLY D:212 , THR D:213 , SER D:214 , ILE D:217 , ASN D:238 , LEU D:239 , GLN D:240 , GLY D:254 , TYR D:255 , VAL D:256
BINDING SITE FOR RESIDUE A2N D 1000
13
BC4
SOFTWARE
CYS D:139 , CYS D:142 , CYS D:164 , ARG D:176
BINDING SITE FOR RESIDUE ZN D 354
14
BC5
SOFTWARE
HIS D:66 , LYS D:79 , HOH D:377 , HOH D:386
BINDING SITE FOR RESIDUE SO4 D 355
15
BC6
SOFTWARE
ASP B:81 , GLY E:50 , ALA E:51 , GLY E:52 , THR E:55 , ASP E:61 , PHE E:62 , ARG E:63 , TRP E:69 , GLN E:111 , HIS E:131 , GLY E:212 , THR E:213 , SER E:214 , ASN E:238 , LEU E:239 , GLN E:240 , GLY E:254 , TYR E:255 , VAL E:256
BINDING SITE FOR RESIDUE A2N E 1000
16
BC7
SOFTWARE
CYS E:139 , CYS E:142 , CYS E:164 , CYS E:175
BINDING SITE FOR RESIDUE ZN E 354
17
BC8
SOFTWARE
HIS B:66 , LYS B:79 , HIS E:66 , LYS E:79
BINDING SITE FOR RESIDUE SO4 E 1002
18
BC9
SOFTWARE
GLU E:27 , LYS E:31 , ARG E:251 , HIS E:253
BINDING SITE FOR RESIDUE SO4 E 1007
19
CC1
SOFTWARE
ARG E:162
BINDING SITE FOR RESIDUE SO4 E 1010
20
CC2
SOFTWARE
GLY F:50 , ALA F:51 , GLY F:52 , THR F:55 , ASP F:61 , PHE F:62 , ARG F:63 , TRP F:69 , GLN F:111 , HIS F:131 , GLY F:212 , THR F:213 , SER F:214 , ASN F:238 , LEU F:239 , GLN F:240 , GLY F:254 , TYR F:255 , VAL F:256
BINDING SITE FOR RESIDUE A2N F 1000
21
CC3
SOFTWARE
CYS F:139 , CYS F:142 , CYS F:164 , CYS F:175
BINDING SITE FOR RESIDUE ZN F 354
22
CC4
SOFTWARE
THR F:83 , PHE F:84 , GLU F:85 , VAL F:151 , HOH F:416
BINDING SITE FOR RESIDUE SO4 F 1001
23
CC5
SOFTWARE
VAL F:151 , GLY F:153 , ARG F:162
BINDING SITE FOR RESIDUE SO4 F 1004
24
CC6
SOFTWARE
HIS F:66 , LYS F:79
BINDING SITE FOR RESIDUE SO4 F 1009
[
close Site info
]
SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_017154 (S44N, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_017154
S
46
N
SIR6_HUMAN
Polymorphism
352493
A/B/C/D/E/F
S
44
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: SIRTUIN (A:33-272,B:33-272,C:33-272,D:33-27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIRTUIN
PS50305
Sirtuin catalytic domain profile.
SIR6_HUMAN
35-274
6
A:33-272
B:33-272
C:33-272
D:33-272
E:33-272
F:33-272
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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