Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF CLEAVED L-ASPARTATE-ALPHA-DECARBOXYLASE FROM FRANCISELLA TULARENSIS
 
Authors :  B. Nocek, M. Gu, L. Papazisi, W. Anderson, A. Joachimiak, Center For S Genomics Of Infectious Diseases (Csgid)
Date :  14 Sep 10  (Deposition) - 20 Oct 10  (Release) - 20 Oct 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B,C,E,F,G,H,I
Biol. Unit 1:  A,B,C,E  (1x)
Biol. Unit 2:  F,G,H,I  (1x)
Biol. Unit 3:  A,B,C,E,F,G,H,I  (1x)
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Double-Psi Beta Barrel, Aspartic Alpha- Decarboxylase, L-Aspartate 1-Carboxy-Lyase (Beta-Alanine-Forming), Pantothenate Biosynthesis, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, M. Gu, L. Papazisi, W. Anderson, A. Joachimiak
Crystal Structure Of Cleaved L-Aspartate-Alpha-Decarboxylas From Francisella Tularensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ASPARTATE 1-DECARBOXYLASE
    Chains: A, B, C, E, F, G, H, I
    EC Number: 4.1.1.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: FRANCISELLA TULARENSIS SUBSP. TULARENSIS
    Organism Taxid: 177416
    Strain: SCHU S4
    Synonym: ASPARTATE ALPHA-DECARBOXYLASE, ASPARTATE 1-DECARBOXYLASE BETA CHAIN, ASPARTATE 1-DECARBOXYLASE ALPHA CHAIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCEFGHI
Biological Unit 1 (1x): ABCE    
Biological Unit 2 (1x):     FGHI
Biological Unit 3 (1x): ABCEFGHI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 30)

Asymmetric Unit (3, 30)
No.NameCountTypeFull Name
1CL8Ligand/IonCHLORIDE ION
2GOL6Ligand/IonGLYCEROL
3MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 22)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL6Ligand/IonGLYCEROL
3MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:25 , ASN A:72 , PRO A:74 , ALA A:75 , ARG C:54 , HOH C:318BINDING SITE FOR RESIDUE CL A 201
02AC2SOFTWAREARG A:54 , PRO B:74 , ALA B:75 , HOH B:261BINDING SITE FOR RESIDUE CL A 112
03AC3SOFTWARESER A:4 , SER B:4 , LYS B:43 , TYR B:90 , HOH B:209 , HOH B:658 , LYS E:43BINDING SITE FOR RESIDUE GOL A 302
04AC4SOFTWAREARG B:54 , SER E:25 , ASN E:72 , PRO E:74 , ALA E:75 , HOH E:368BINDING SITE FOR RESIDUE CL B 201
05AC5SOFTWARESER C:25 , ASN C:72 , PRO C:74 , ALA C:75 , HOH C:439 , ARG E:54BINDING SITE FOR RESIDUE CL C 201
06AC6SOFTWARELYS A:43 , SER C:4 , LYS C:43 , GLU C:56 , TYR C:90 , HOH C:187 , HOH C:684 , HOH C:1050BINDING SITE FOR RESIDUE GOL C 302
07AC7SOFTWAREARG F:54 , ASN I:72 , PRO I:74 , ALA I:75 , HOH I:121BINDING SITE FOR RESIDUE CL F 201
08AC8SOFTWARELYS F:43 , TYR F:90 , HOH F:303 , HOH F:1034 , HOH F:1125 , SER H:4 , GOL H:112 , LYS I:43BINDING SITE FOR RESIDUE GOL F 301
09AC9SOFTWARESER F:4 , LYS G:43 , HOH G:199 , HOH G:698 , HOH G:1082 , GOL H:301 , SER I:4 , GLN I:92 , HOH I:323BINDING SITE FOR RESIDUE GOL G 301
10BC1SOFTWAREARG G:54 , PRO H:74 , ALA H:75 , HOH H:960BINDING SITE FOR RESIDUE CL G 201
11BC2SOFTWAREPRO F:74 , ALA F:75 , ARG H:54 , HOH H:215BINDING SITE FOR RESIDUE CL H 201
12BC3SOFTWARELYS G:43 , TYR G:90 , GOL G:301 , LYS H:43 , GOL H:112 , HOH H:152 , HOH H:327 , HOH H:451 , SER I:4BINDING SITE FOR RESIDUE GOL H 301
13BC4SOFTWARELYS F:43 , GOL F:301 , SER G:4 , SER H:4 , LYS H:43 , TYR H:90 , GLN H:92 , HOH H:161 , GOL H:301 , HOH H:598 , HOH H:1078BINDING SITE FOR RESIDUE GOL H 112
14BC5SOFTWAREPRO G:74 , ALA G:75 , ARG I:54 , HOH I:181BINDING SITE FOR RESIDUE CL I 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OUG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OUG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OUG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OUG)

(-) Exons   (0, 0)

(no "Exon" information available for 3OUG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:107
 aligned with PAND_FRATT | Q5NF56 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
           PAND_FRATT     1 MLISVLKSKISYATVTGKDLFYVGSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
               SCOP domains d3ouga_ A: automated ma tches                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee..eee....-.eeeehhhhhhh......eeeeee.....eeeeeeeee......eeee.hhhhhh....eeeeeeeeee.........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 3oug A   1 mLISVLKSKISYATVTGKDLFYV-SITIDSEImKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
                            |       10        20  | |   30  |     40        50        60        70        80        90       100        
                            |                    23 |      33-MSE                                                                       
                            1-MSE                  25                                                                                   


Chain B from PDB  Type:PROTEIN  Length:107
 aligned with PAND_FRATT | Q5NF56 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
           PAND_FRATT     1 MLISVLKSKISYATVTGKDLFYVGSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
               SCOP domains d3ougb_ B: automated ma tches                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee..eee....-.eeeehhhhhhh......eeeeee.....eeeeeeeee......eeee.hhhhhh....eeeeeeeeee.........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 3oug B   1 mLISVLKSKISYATVTGKDLFYV-SITIDSEImKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
                            |       10        20  | |   30  |     40        50        60        70        80        90       100        
                            1-MSE                23 |      33-MSE                                                                       
                                                   25                                                                                   


Chain C from PDB  Type:PROTEIN  Length:106
 aligned with PAND_FRATT | Q5NF56 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
           PAND_FRATT     1 MLISVLKSKISYATVTGKDLFYVGSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
               SCOP domains d3ougc_ C: automated m  atches                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee..eee...--.eeeehhhhhhh......eeeeee.....eeeeeeeee......eeee.hhhhhh....eeeeeeeeee.........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 3oug C   1 mLISVLKSKISYATVTGKDLFY--SITIDSEImKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
                            |       10        20 |  |   30  |     40        50        60        70        80        90       100        
                            1-MSE               22 25      33-MSE                                                                       


Chain E from PDB  Type:PROTEIN  Length:106
 aligned with PAND_FRATT | Q5NF56 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
           PAND_FRATT     1 MLISVLKSKISYATVTGKDLFYVGSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
               SCOP domains d3ouge_ E: automated m  atches                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee..eee...--.eeeehhhhhhh......eeeeee.....eeeeeeeee......eeee.hhhhhh....eeeeeeeeee.........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 3oug E   1 mLISVLKSKISYATVTGKDLFY--SITIDSEImKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
                            |       10        20 |  |   30  |     40        50        60        70        80        90       100        
                            1-MSE               22 25      33-MSE                                                                       


Chain F from PDB  Type:PROTEIN  Length:107
 aligned with PAND_FRATT | Q5NF56 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
           PAND_FRATT     1 MLISVLKSKISYATVTGKDLFYVGSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
               SCOP domains d3ougf_ F: automated ma tches                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee..eee....-.eeeehhhhhhhh.....eeeeee.....eeeeeeeee......eeee.hhhhhh....eeeeeeeeee.........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 3oug F   1 mLISVLKSKISYATVTGKDLFYV-SITIDSEImKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
                            |       10        20  | |   30  |     40        50        60        70        80        90       100        
                            1-MSE                23 |      33-MSE                                                                       
                                                   25                                                                                   


Chain G from PDB  Type:PROTEIN  Length:107
 aligned with PAND_FRATT | Q5NF56 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
           PAND_FRATT     1 MLISVLKSKISYATVTGKDLFYVGSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
               SCOP domains d3ougg_ G: automated ma tches                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee..eee....-.eeeehhhhhhh......eeeeee.....eeeeeeeee......eeee.hhhhhh....eeeeeeeeee.........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 3oug G   1 mLISVLKSKISYATVTGKDLFYV-SITIDSEImKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
                            |       10        20  | |   30  |     40        50        60        70        80        90       100        
                            1-MSE                23 |      33-MSE                                                                       
                                                   25                                                                                   


Chain H from PDB  Type:PROTEIN  Length:107
 aligned with PAND_FRATT | Q5NF56 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
           PAND_FRATT     1 MLISVLKSKISYATVTGKDLFYVGSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
               SCOP domains d3ough_ H: automated ma tches                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee..eee....-.eeeehhhhhhhh.....eeeeee.....eeeeeeeee......eeee.hhhhhh....eeeeeeeeee.........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 3oug H   1 mLISVLKSKISYATVTGKDLFYV-SITIDSEImKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
                            |       10        20  | |   30  |     40        50        60        70        80        90       100        
                            1-MSE                23 |      33-MSE                                                                       
                                                   25                                                                                   


Chain I from PDB  Type:PROTEIN  Length:107
 aligned with PAND_FRATT | Q5NF56 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
           PAND_FRATT     1 MLISVLKSKISYATVTGKDLFYVGSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
               SCOP domains d3ougi_ I: automated ma tches                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) Asp_decarbox-3ougI01 I: 1-108                                                                                Pfam domains (1)
           Pfam domains (2) Asp_decarbox-3ougI02 I: 1-108                                                                                Pfam domains (2)
           Pfam domains (3) Asp_decarbox-3ougI03 I: 1-108                                                                                Pfam domains (3)
           Pfam domains (4) Asp_decarbox-3ougI04 I: 1-108                                                                                Pfam domains (4)
           Pfam domains (5) Asp_decarbox-3ougI05 I: 1-108                                                                                Pfam domains (5)
           Pfam domains (6) Asp_decarbox-3ougI06 I: 1-108                                                                                Pfam domains (6)
           Pfam domains (7) Asp_decarbox-3ougI07 I: 1-108                                                                                Pfam domains (7)
           Pfam domains (8) Asp_decarbox-3ougI08 I: 1-108                                                                                Pfam domains (8)
         Sec.struct. author ..eeeeeeeeeeee..eee....-.eeeehhhhhhhh.....eeeeee.....eeeeeeeee......eeee.hhhhhh....eeeeeeeeee.........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 3oug I   1 mLISVLKSKISYATVTGKDLFYV-SITIDSEImKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK 108
                            |       10        20  | |   30  |     40        50        60        70        80        90       100        
                            1-MSE                23 |      33-MSE                                                                       
                                                   25
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OUG)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: AcetylDC-like (37)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,E,F,G,H,I   (PAND_FRATT | Q5NF56)
molecular function
    GO:0004068    aspartate 1-decarboxylase activity    Catalysis of the reaction: L-aspartate = beta-alanine + CO2.
    GO:0016831    carboxy-lyase activity    Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0006523    alanine biosynthetic process    The chemical reactions and pathways resulting in the formation of alanine, 2-aminopropanoic acid.
    GO:0015940    pantothenate biosynthetic process    The chemical reactions and pathways resulting in the formation of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3oug)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3oug
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PAND_FRATT | Q5NF56
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  4.1.1.11
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  PAND_FRATT | Q5NF56
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3OUG)

(-) Related Entries Specified in the PDB File

2c45 RELATED ID: IDP02730 RELATED DB: TARGETDB