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3OUG
Biol. Unit 1
Info
Asym.Unit (336 KB)
Biol.Unit 1 (158 KB)
Biol.Unit 2 (162 KB)
Biol.Unit 3 (317 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CLEAVED L-ASPARTATE-ALPHA-DECARBOXYLASE FROM FRANCISELLA TULARENSIS
Authors
:
B. Nocek, M. Gu, L. Papazisi, W. Anderson, A. Joachimiak, Center For S Genomics Of Infectious Diseases (Csgid)
Date
:
14 Sep 10 (Deposition) - 20 Oct 10 (Release) - 20 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,E,F,G,H,I
Biol. Unit 1: A,B,C,E (1x)
Biol. Unit 2: F,G,H,I (1x)
Biol. Unit 3: A,B,C,E,F,G,H,I (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Double-Psi Beta Barrel, Aspartic Alpha- Decarboxylase, L-Aspartate 1-Carboxy-Lyase (Beta-Alanine-Forming), Pantothenate Biosynthesis, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
B. Nocek, M. Gu, L. Papazisi, W. Anderson, A. Joachimiak
Crystal Structure Of Cleaved L-Aspartate-Alpha-Decarboxylas From Francisella Tularensis
To Be Published
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
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No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:25 , ASN A:72 , PRO A:74 , ALA A:75 , ARG C:54 , HOH C:318
BINDING SITE FOR RESIDUE CL A 201
2
AC2
SOFTWARE
ARG A:54 , PRO B:74 , ALA B:75 , HOH B:261
BINDING SITE FOR RESIDUE CL A 112
3
AC3
SOFTWARE
SER A:4 , SER B:4 , LYS B:43 , TYR B:90 , HOH B:209 , HOH B:658 , LYS E:43
BINDING SITE FOR RESIDUE GOL A 302
4
AC4
SOFTWARE
ARG B:54 , SER E:25 , ASN E:72 , PRO E:74 , ALA E:75 , HOH E:368
BINDING SITE FOR RESIDUE CL B 201
5
AC5
SOFTWARE
SER C:25 , ASN C:72 , PRO C:74 , ALA C:75 , HOH C:439 , ARG E:54
BINDING SITE FOR RESIDUE CL C 201
6
AC6
SOFTWARE
LYS A:43 , SER C:4 , LYS C:43 , GLU C:56 , TYR C:90 , HOH C:187 , HOH C:684 , HOH C:1050
BINDING SITE FOR RESIDUE GOL C 302
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3ouga_ (A:)
1b: SCOP_d3ougb_ (B:)
1c: SCOP_d3ougc_ (C:)
1d: SCOP_d3ouge_ (E:)
1e: SCOP_d3ougf_ (F:)
1f: SCOP_d3ougg_ (G:)
1g: SCOP_d3ough_ (H:)
1h: SCOP_d3ougi_ (I:)
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Class
:
All beta proteins
(24004)
Fold
:
Double psi beta-barrel
(111)
Superfamily
:
ADC-like
(88)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Francisella tularensis [TaxId: 177416]
(1)
1a
d3ouga_
A:
1b
d3ougb_
B:
1c
d3ougc_
C:
1d
d3ouge_
E:
1e
d3ougf_
F:
1f
d3ougg_
G:
1g
d3ough_
H:
1h
d3ougi_
I:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Asp_decarbox_3ougI01 (I:1-108)
1b: PFAM_Asp_decarbox_3ougI02 (I:1-108)
1c: PFAM_Asp_decarbox_3ougI03 (I:1-108)
1d: PFAM_Asp_decarbox_3ougI04 (I:1-108)
1e: PFAM_Asp_decarbox_3ougI05 (I:1-108)
1f: PFAM_Asp_decarbox_3ougI06 (I:1-108)
1g: PFAM_Asp_decarbox_3ougI07 (I:1-108)
1h: PFAM_Asp_decarbox_3ougI08 (I:1-108)
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Clan
:
AcetylDC-like
(37)
Family
:
Asp_decarbox
(13)
Francisella tularensis subsp. tularensis
(1)
1a
Asp_decarbox-3ougI01
I:1-108
1b
Asp_decarbox-3ougI02
I:1-108
1c
Asp_decarbox-3ougI03
I:1-108
1d
Asp_decarbox-3ougI04
I:1-108
1e
Asp_decarbox-3ougI05
I:1-108
1f
Asp_decarbox-3ougI06
I:1-108
1g
Asp_decarbox-3ougI07
I:1-108
1h
Asp_decarbox-3ougI08
I:1-108
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (336 KB)
Header - Asym.Unit
Biol.Unit 1 (158 KB)
Header - Biol.Unit 1
Biol.Unit 2 (162 KB)
Header - Biol.Unit 2
Biol.Unit 3 (317 KB)
Header - Biol.Unit 3
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