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(-) Description

Title :  MYCOBACTERIUM TUBERCULOSIS PKNB KINASE DOMAIN L33D MUTANT (CRYSTAL FORM 5)
 
Authors :  M. C. Good, N. Echols, T. N. Lombana, T. Alber, Tb Structural Genomics Consortium (Tbsgc)
Date :  07 Sep 10  (Deposition) - 15 Dec 10  (Release) - 15 Dec 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Tb Structural Genomics Consortium, Tbsgc, Kinase Domain, Signal Transduction, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. N. Lombana, N. Echols, M. C. Good, N. D. Thomsen, H. -L. Ng, A. E. Greenstein, A. M. Falick, D. S. King, T. Alber
Allosteric Activation Mechanism Of The Mycobacterium Tuberculosis Receptor Ser/Thr Kinase, Pknb
Structure V. 18 1667 2010
PubMed: search

(-) Compounds

Molecule 1 - SERINE/THREONINE PROTEIN KINASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE DOMAIN (UNP RESIDUES 1 TO 308)
    Gene: MRA_0016, PKNB, PKNB (RV0014C)
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 419947
    Strain: H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1AGS1Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:18 , PHE A:19 , GLY A:20 , GLY A:21 , MET A:22 , SER A:23 , VAL A:25 , ALA A:38 , LYS A:40 , VAL A:72 , MET A:92 , GLU A:93 , VAL A:95 , THR A:99 , LYS A:140 , MET A:155 , ASP A:156 , ILE A:177 , HOH A:341 , HOH A:348 , HOH A:351 , HOH A:360 , HOH A:377 , HOH A:399 , HOH A:401BINDING SITE FOR RESIDUE AGS A 340

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ORP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Thr A:289 -Asp A:290

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ORP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ORP)

(-) Exons   (0, 0)

(no "Exon" information available for 3ORP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
 aligned with A5TY84_MYCTA | A5TY84 from UniProtKB/TrEMBL  Length:626

    Alignment length:290
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290
         A5TY84_MYCTA     1 MTTPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPEAPKVLTD 290
               SCOP domains d3orpa_ A: automated matches                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------Pkinase-3orpA01 A:11-274                                                                                                                                                                                                                                                ---------------- Pfam domains
         Sec.struct. author .....ee...eeeeeeeee...eeeeeeee....eeeeeeee.hhhh.hhhhhhhhhhhhhhh..........eeeeeeeee..eeeeeeeee...eeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee....eee......----------------..hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...hhhhhh...hhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3orp A   1 MTTPSHLSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIA----------------IGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPEAPKVLTD 290
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160         -      |180       190       200       210       220       230       240       250       260       270       280       290
                                                                                                                                                                                         160              177
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ORP)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: PKinase (934)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (A5TY84_MYCTA | A5TY84)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  3orp
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A5TY84_MYCTA | A5TY84: 3ori 3oro
UniProtKB/TrEMBL
        A5TY84_MYCTA | A5TY84: 3ork 3orl 3orm 3ort 3ouv

(-) Related Entries Specified in the PDB File

1mru WILD-TYPE
1o6y WILD-TYPE
3ori
3ork
3orl
3orm
3oro
3orp
3ort