3ORK - JenaLib

Title :   MYCOBACTERIUM TUBERCULOSIS PKNB KINASE DOMAIN L33D MUTANT (CRYSTAL FORM 2)

Authors :   N. Echols, T. N. Lombana, N. D. Thomsen, H. -L. Ng, T. Alber, Tb Structur Genomics Consortium (Tbsgc)

Date :   07 Sep 10 (Deposition) - 15 Dec 10 (Release) - 15 Dec 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym./Biol. Unit : A

Keywords :   Structural Genomics, Tb Structural Genomics Consortium, Tbsgc, Kinase Domain, Signal Transduction, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. N. Lombana, N. Echols, M. C. Good, N. D. Thomsen, H. -L. Ng, A. E. Greenstein, A. M. Falick, D. S. King, T. Alber
Allosteric Activation Mechanism Of The Mycobacterium Tuberculosis Receptor Ser/Thr Kinase, Pknb
Structure V. 18 1667 2010
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:17 , GLY A:18 , PHE A:19 , GLY A:20 , GLY A:21 , MET A:22 , SER A:23 , VAL A:25 , ALA A:38 , LYS A:40 , MET A:92 , GLU A:93 , VAL A:95 , THR A:99 , LYS A:140 , ALA A:142 , ASN A:143 , MET A:145 , MET A:155 , ASP A:156 , MN A:341 , HOH A:342 , TRS A:344 , HOH A:359 , HOH A:363 , HOH A:387 , HOH A:397 , HOH A:401 , HOH A:470 , HOH A:471 , HOH A:602 , HOH A:663	BINDING SITE FOR RESIDUE AGS A 340
2	AC2	SOFTWARE	ASN A:143 , ASP A:156 , AGS A:340 , HOH A:359 , HOH A:363	BINDING SITE FOR RESIDUE MN A 341
3	AC3	SOFTWARE	ARG A:35 , ARG A:189 , ARG A:230	BINDING SITE FOR RESIDUE SO4 A 343
4	AC4	SOFTWARE	GLY A:18 , PHE A:19 , ARG A:48 , ARG A:101 , ASP A:102 , AGS A:340 , HOH A:400 , HOH A:401 , HOH A:427 , HOH A:501	BINDING SITE FOR RESIDUE TRS A 344

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:274
 aligned with A5TY84_MYCTA | A5TY84 from UniProtKB/TrEMBL  Length:626

    Alignment length:292
                              1                                                                                                                                                                                                                                                                                                 
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288  
         A5TY84_MYCTA     - --MTTPSHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPEAPKVLTD 290
               SCOP domains d3orka_ A: automated matches                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------Pkinase-3orkA01 A:11-274                                                                                                                                                                                                                                                ---------------- Pfam domains
         Sec.struct. author .......ee...eeeeeeeee...eeeeeeee....eeeeeeee......hhhhhhhhhhhhh............eeeeeeeee..eeeeeeeee...eeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee....eee......------------------.....hhhhhhh...hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...hhhhhh...hhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ork A  -1 SHMTTPSHLSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIA------------------TAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPEAPKVLTD 290
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158 |       -         -|      188       198       208       218       228       238       248       258       268       278       288  
                                                                                                                                                                                           160                179

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (A5TY84_MYCTA | A5TY84)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
biological process
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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Description