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(-) Description

Title :  CRYSTAL STRUCTURE OF LRIM1/APL1C COMPLEX
 
Authors :  R. H. G. Baxter, J. Deisenhofer
Date :  20 Aug 10  (Deposition) - 22 Sep 10  (Release) - 13 Oct 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Coiled-Coil, Helix-Loop-Helix, Leucine-Rich Repeat, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. H. Baxter, S. Steinert, Y. Chelliah, G. Volohonsky, E. A. Levashina J. Deisenhofer
A Heterodimeric Complex Of The Lrr Proteins Lrim1 And Apl1C Regulates Complement-Like Immunity In Anopheles Gambiae.
Proc. Natl. Acad. Sci. Usa V. 107 16817 2010
PubMed-ID: 20826443  |  Reference-DOI: 10.1073/PNAS.1010575107

(-) Compounds

Molecule 1 - LEUCINE-RICH IMMUNE MOLECULE 1
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: BAC-TO-BAC
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 23-509
    Gene: AGAP006348, LRIM1
    Organism Common: AFRICAN MALARIA MOSQUITO
    Organism Scientific: ANOPHELES GAMBIAE
    Organism Taxid: 7165
    Strain: G3
 
Molecule 2 - ANOPHELES PLASMODIUM-RESPONSIVE LEUCINE-RICH REPEAT PROTEIN 1
    Chains: B
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: BAC-TO-BAC
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 140-729
    Gene: AGAP007033, APL1C
    Organism Common: AFRICAN MALARIA MOSQUITO
    Organism Scientific: ANOPHELES GAMBIAE
    Organism Taxid: 7165
    Strain: G3

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric/Biological Unit (2, 16)
No.NameCountTypeFull Name
1MAN4Ligand/IonALPHA-D-MANNOSE
2NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:64 , ASN A:86 , ASP A:108 , THR A:372 , HOH A:654 , NAG A:1002BINDING SITE FOR RESIDUE NAG A 1001
02AC2SOFTWARETHR A:372 , VAL A:373 , HOH A:660 , HOH A:692 , HOH A:722 , HOH A:730 , NAG A:1001BINDING SITE FOR RESIDUE NAG A 1002
03AC3SOFTWARETYR A:93 , GLN A:115 , ASN A:132 , HOH A:528 , NAG A:1004BINDING SITE FOR RESIDUE NAG A 1003
04AC4SOFTWAREGLU A:396 , HOH A:570 , HOH A:713 , NAG A:1003BINDING SITE FOR RESIDUE NAG A 1004
05AC5SOFTWAREASN A:491 , HOH A:623 , HOH A:709 , NAG A:1006BINDING SITE FOR RESIDUE NAG A 1005
06AC6SOFTWAREHOH A:632 , NAG A:1005BINDING SITE FOR RESIDUE NAG A 1006
07AC7SOFTWAREHOH B:102 , HOH B:127 , ASN B:187 , ILE B:674 , HOH B:730 , HOH B:821 , HOH B:865 , HOH B:960 , HOH B:973 , HOH B:994BINDING SITE FOR RESIDUE NAG B 1007
08AC8SOFTWAREASN A:453 , HOH B:22 , HOH B:88 , SER B:306 , ASN B:325 , SER B:327 , ASP B:344 , HOH B:928 , NAG B:1010BINDING SITE FOR RESIDUE NAG B 1009
09AC9SOFTWAREASN A:453 , ILE A:456 , HOH A:553 , NAG B:1009 , MAN B:1011BINDING SITE FOR RESIDUE NAG B 1010
10BC1SOFTWAREHOH B:733 , HOH B:792 , NAG B:1010 , MAN B:1012 , MAN B:1013BINDING SITE FOR RESIDUE MAN B 1011
11BC2SOFTWAREHOH B:738 , HOH B:881 , HOH B:997 , MAN B:1011BINDING SITE FOR RESIDUE MAN B 1012
12BC3SOFTWAREARG B:655 , HOH B:940 , MAN B:1011 , MAN B:1014BINDING SITE FOR RESIDUE MAN B 1013
13BC4SOFTWARETRP A:459 , ARG B:655 , GLU B:658 , HOH B:733 , HOH B:825 , MAN B:1013BINDING SITE FOR RESIDUE MAN B 1014
14BC5SOFTWAREHOH B:64 , ASN B:351 , ASN B:370 , ARG B:619 , HOH B:775 , HOH B:829 , NAG B:1016BINDING SITE FOR RESIDUE NAG B 1015
15BC6SOFTWAREHOH B:779 , NAG B:1015BINDING SITE FOR RESIDUE NAG B 1016
16BC7SOFTWARETYR B:457 , LYS B:475 , ASN B:476 , PRO B:499 , ASP B:502 , HOH B:757 , HOH B:761BINDING SITE FOR RESIDUE NAG B 1017

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:138 -A:164
2A:273 -A:318
3A:305 -A:317
4B:145 -B:154
5B:486 -B:520
6B:508 -B:519

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg B:498 -Pro B:499

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OJA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OJA)

(-) Exons   (0, 0)

(no "Exon" information available for 3OJA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:482
 aligned with Q7Q5N3_ANOGA | Q7Q5N3 from UniProtKB/TrEMBL  Length:509

    Alignment length:487
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       
         Q7Q5N3_ANOGA    23 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQLG 509
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------LRR_4-3ojaA01 A:56-102                         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..eeeee.....hhhhhhhh...hhhhh.eee.........hhhhhh......eee......eeeee........eee....eeeeeee.....eee........eee......eeee.......hhhhhhhhhhh.eeeee.......eee.hhhhhhh....eee.......eee.........eee.......eehhhhhhhh...eee.......ee...........eee......hhhhhhhhhh.hhhhhhhhhhhhhhhh............eee..eee....hhhhhhhhhhhhhhhh...-----hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oja A  23 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS-----TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQLG 509
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332        |-    |  352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       
                                                                                                                                                                                                                                                                                                                                                        341   347                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:534
 aligned with A7URS6_ANOGA | A7URS6 from UniProtKB/TrEMBL  Length:730

    Alignment length:572
                                   158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718  
         A7URS6_ANOGA   149 PRQLEYKCIEGNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLASFRQVEVLNLNGLQIEQIDTNAFAYAHTIQKLYMGFNAIRYLPPYVFQNVPLLTVLVLERNDLTSLPRGIFHNTPKLSMLSMSNNNLERIEDDTFQATTALQNLQLSSNRLTHVDLSLIPSLFHVNVSYNLLSTLAIPIAVEELDASHNSINAVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVDVDLSYNQLEKITYQHFVKMQRLERLYVSNNHLVALNLYSQPIPTLKVLDLSHNHLLHVERNQPQFDRVEYLYLDHNSIVTLKLSTSHTLKNLTLSHNDWDCNSLRALFRNVAHPAVHDADQHCKIDYQLEQGLCCKESDKPYLDRLLQYIALTSVVEKLQRAQGRCSATDTINSVQSLSHYITQQGDVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERHAFKLRETQARRTEANAKQKETEDLEQENIALEKQLDNKKAKQAELRQETSQKRQKVKQLEAKKN 720
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_8-3ojaB02 B:359-417                                    ----------LRR_7-3ojaB01    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_8-3ojaB03 B:359-417                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_8-3ojaB04 B:359-417                                    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
         Sec.struct. author ....ee.....--...eee...ee.......ee...hhhhh...eeee...ee.ee.hhhhhhh....eee.......ee............eee.....................eee.....................eee.....................eee.........hhhhh....eee.......eee......eee.......eee........eee........hhhhhhh....eee.......eee.hhhh......eee.......eee..........eee........hhhhhhhhh...eee..................eee.....eehhhhhhhh...................eee..eeee...hhhhhhhhhhhhhhhhhhh.------------------------------------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oja B 138 PRQPEYKCIDS--QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKV------------------------------------LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 709
                                   147|  |   157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537      |  -         -         -         -   |   587       597       607       617       627       637       647       657       667       677       687       697       707  
                                    148  |                                                                                                                                                                                                                                                                                                                                                                                                      544                                  581                                                                                                                                
                                       151
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OJA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OJA)

(-) Pfam Domains  (3, 5)

Asymmetric/Biological Unit
(-)
Clan: LRR (77)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3OJA)

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 Related Entries

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