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(-) Description

Title :  CRYSTAL STRUCTURE OF LRIM1 LEUCINE-RICH REPEAT DOMAIN
 
Authors :  R. H. G. Baxter, S. Steinert, Y. Chelliah, G. Volohonsky, E. A. Levashin J. Deisenhofer
Date :  27 Jul 10  (Deposition) - 22 Sep 10  (Release) - 05 Jan 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A (1x),B (1x)
Keywords :  Leucine-Rich Repeat, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. H. Baxter, S. Steinert, Y. Chelliah, G. Volohonsky, E. A. Levashina J. Deisenhofer
A Heterodimeric Complex Of The Lrr Proteins Lrim1 And Apl1C Regulates Complement-Like Immunity In Anopheles Gambiae.
Proc. Natl. Acad. Sci. Usa V. 107 16817 2010
PubMed-ID: 20826443  |  Reference-DOI: 10.1073/PNAS.1010575107

(-) Compounds

Molecule 1 - PROTEIN LRIM1
    Chains: A, B
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Expression System Vector: PFASTBAC1
    Expression System Vector Type: BACULOVIRUS
    Fragment: RESIDUES 23-332, LEUCINE-RICH REPEAT DOMAIN
    Gene: AGAP006348, LRIM1
    Organism Common: AFRICAN MALARIA MOSQUITO
    Organism Scientific: ANOPHELES GAMBIAE
    Organism Taxid: 7165
    Strain: G3
    Synonym: AGAP006348-PA

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1CO2Ligand/IonCOBALT (II) ION
2NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:64 , ASN A:86 , SER A:88 , ASP A:108 , HOH A:425 , HOH A:456 , NAG A:1002BINDING SITE FOR RESIDUE NAG A 1001
2AC2SOFTWARENAG A:1001BINDING SITE FOR RESIDUE NAG A 1002
3AC3SOFTWAREHIS A:337 , HIS A:339 , HIS B:336 , HIS B:339BINDING SITE FOR RESIDUE CO A 1
4AC4SOFTWAREHIS A:334 , HIS A:336 , HIS B:335 , HIS B:338BINDING SITE FOR RESIDUE CO A 2
5AC5SOFTWARESER B:64 , ASN B:86 , ASP B:108 , HOH B:415BINDING SITE FOR RESIDUE NAG B 1004
6AC6SOFTWAREASN B:132 , HOH B:375 , HOH B:382 , HOH B:406BINDING SITE FOR RESIDUE NAG B 1005

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:138 -A:164
2A:273 -A:318
3A:305 -A:317
4B:138 -B:164
5B:273 -B:318
6B:305 -B:317

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3O53)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O53)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3O53)

(-) Exons   (0, 0)

(no "Exon" information available for 3O53)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
 aligned with Q7Q5N3_ANOGA | Q7Q5N3 from UniProtKB/TrEMBL  Length:509

    Alignment length:316
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333      
         Q7Q5N3_ANOGA    24 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 339
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeeee.....hhhhhhhhhhhhhhhh.eee.........hhhhhh......eee......eeeeee.......eee....eeeeeee.....eee.......eeee......eeee.......hhhhh.hhhhh.eeeee.......eee.hhhhhhh....eee.......eee.........eee.......eehhhhhhhh...eee.......ee...........eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eee..eee.....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o53 A  24 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 339
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333      


Chain B from PDB  Type:PROTEIN  Length:314
 aligned with Q7Q5N3_ANOGA | Q7Q5N3 from UniProtKB/TrEMBL  Length:509

    Alignment length:314
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335    
         Q7Q5N3_ANOGA    26 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------LRR_4-3o53B01 B:56-102                         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------LRR_4-3o53B02 B:56-102                         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .......eee.......hhhhhhhh.........eee.........hhhhhh......eee......eeeee........eee....eeeeeee.....eee.......eeee......eeee.......hhhhh.hhhhh.eeeee.......eee.hhhhhhh....eee.......eee.........eee.......eehhhhhhhh...eee.......ee...........eee.....eehhhhhhhhhhhhhhhhhhhhhhhhhhh...........eee..eeee..hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o53 B  26 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 339
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3O53)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O53)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: LRR (77)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3O53)

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 Related Entries

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        Q7Q5N3_ANOGA | Q7Q5N3: 3oja

(-) Related Entries Specified in the PDB File

3o6n