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3OJA
Asym. Unit
Info
Asym.Unit (193 KB)
Biol.Unit 1 (185 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LRIM1/APL1C COMPLEX
Authors
:
R. H. G. Baxter, J. Deisenhofer
Date
:
20 Aug 10 (Deposition) - 22 Sep 10 (Release) - 13 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Coiled-Coil, Helix-Loop-Helix, Leucine-Rich Repeat, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. H. Baxter, S. Steinert, Y. Chelliah, G. Volohonsky, E. A. Levashina J. Deisenhofer
A Heterodimeric Complex Of The Lrr Proteins Lrim1 And Apl1C Regulates Complement-Like Immunity In Anopheles Gambiae.
Proc. Natl. Acad. Sci. Usa V. 107 16817 2010
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: ALPHA-D-MANNOSE (MANa)
1b: ALPHA-D-MANNOSE (MANb)
1c: ALPHA-D-MANNOSE (MANc)
1d: ALPHA-D-MANNOSE (MANd)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
2
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:64 , ASN A:86 , ASP A:108 , THR A:372 , HOH A:654 , NAG A:1002
BINDING SITE FOR RESIDUE NAG A 1001
02
AC2
SOFTWARE
THR A:372 , VAL A:373 , HOH A:660 , HOH A:692 , HOH A:722 , HOH A:730 , NAG A:1001
BINDING SITE FOR RESIDUE NAG A 1002
03
AC3
SOFTWARE
TYR A:93 , GLN A:115 , ASN A:132 , HOH A:528 , NAG A:1004
BINDING SITE FOR RESIDUE NAG A 1003
04
AC4
SOFTWARE
GLU A:396 , HOH A:570 , HOH A:713 , NAG A:1003
BINDING SITE FOR RESIDUE NAG A 1004
05
AC5
SOFTWARE
ASN A:491 , HOH A:623 , HOH A:709 , NAG A:1006
BINDING SITE FOR RESIDUE NAG A 1005
06
AC6
SOFTWARE
HOH A:632 , NAG A:1005
BINDING SITE FOR RESIDUE NAG A 1006
07
AC7
SOFTWARE
HOH B:102 , HOH B:127 , ASN B:187 , ILE B:674 , HOH B:730 , HOH B:821 , HOH B:865 , HOH B:960 , HOH B:973 , HOH B:994
BINDING SITE FOR RESIDUE NAG B 1007
08
AC8
SOFTWARE
ASN A:453 , HOH B:22 , HOH B:88 , SER B:306 , ASN B:325 , SER B:327 , ASP B:344 , HOH B:928 , NAG B:1010
BINDING SITE FOR RESIDUE NAG B 1009
09
AC9
SOFTWARE
ASN A:453 , ILE A:456 , HOH A:553 , NAG B:1009 , MAN B:1011
BINDING SITE FOR RESIDUE NAG B 1010
10
BC1
SOFTWARE
HOH B:733 , HOH B:792 , NAG B:1010 , MAN B:1012 , MAN B:1013
BINDING SITE FOR RESIDUE MAN B 1011
11
BC2
SOFTWARE
HOH B:738 , HOH B:881 , HOH B:997 , MAN B:1011
BINDING SITE FOR RESIDUE MAN B 1012
12
BC3
SOFTWARE
ARG B:655 , HOH B:940 , MAN B:1011 , MAN B:1014
BINDING SITE FOR RESIDUE MAN B 1013
13
BC4
SOFTWARE
TRP A:459 , ARG B:655 , GLU B:658 , HOH B:733 , HOH B:825 , MAN B:1013
BINDING SITE FOR RESIDUE MAN B 1014
14
BC5
SOFTWARE
HOH B:64 , ASN B:351 , ASN B:370 , ARG B:619 , HOH B:775 , HOH B:829 , NAG B:1016
BINDING SITE FOR RESIDUE NAG B 1015
15
BC6
SOFTWARE
HOH B:779 , NAG B:1015
BINDING SITE FOR RESIDUE NAG B 1016
16
BC7
SOFTWARE
TYR B:457 , LYS B:475 , ASN B:476 , PRO B:499 , ASP B:502 , HOH B:757 , HOH B:761
BINDING SITE FOR RESIDUE NAG B 1017
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 5)
Info
all PFAM domains
1a: PFAM_LRR_4_3ojaA01 (A:56-102)
2a: PFAM_LRR_7_3ojaB01 (B:428-444)
3a: PFAM_LRR_8_3ojaB02 (B:359-417)
3b: PFAM_LRR_8_3ojaB03 (B:359-417)
3c: PFAM_LRR_8_3ojaB04 (B:359-417)
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Clans
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Clan
:
LRR
(77)
Family
:
LRR_4
(28)
Anopheles gambiae (African malaria mosquito)
(2)
1a
LRR_4-3ojaA01
A:56-102
Family
:
LRR_7
(15)
Anopheles gambiae (African malaria mosquito)
(1)
2a
LRR_7-3ojaB01
B:428-444
Family
:
LRR_8
(41)
Anopheles gambiae (African malaria mosquito)
(1)
3a
LRR_8-3ojaB02
B:359-417
3b
LRR_8-3ojaB03
B:359-417
3c
LRR_8-3ojaB04
B:359-417
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Asymmetric Unit 1
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