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(-) Description

Title :  THE CRYSTAL STRUCTURE OF CANDIDA GLABRATA THI6, A BIFUNCTIONAL ENZYME INVOLVED IN THIAMIN BIOSYHTHESIS OF EUKARYOTES
 
Authors :  D. Paul, A. Chatterjee, T. P. Begley, S. E. Ealick
Date :  21 Jun 10  (Deposition) - 10 Nov 10  (Release) - 29 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.01
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Thi6, Bifunctional Enzyme, Thiamin Biosynthesis, Eukaryoyes, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Paul, A. Chatterjee, T. P. Begley, S. E. Ealick
Domain Organization In Candida Glabrata Thi6, A Bifunctiona Enzyme Required For Thiamin Biosynthesis In Eukaryotes .
Biochemistry V. 49 9922 2010
PubMed-ID: 20968298  |  Reference-DOI: 10.1021/BI101008U

(-) Compounds

Molecule 1 - THIAMINE BIOSYNTHETIC BIFUNCTIONAL ENZYME
    Chains: A, B, C, D, E, F
    EC Number: 2.5.1.3, 2.7.1.50
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: THT
    Expression System Strain: BL21STAR(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CAGL0E05808G, THI6
    Organism Common: YEAST
    Organism Scientific: CANDIDA GLABRATA
    Organism Taxid: 5478

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric/Biological Unit (2, 18)
No.NameCountTypeFull Name
1MG12Ligand/IonMAGNESIUM ION
2TPS6Ligand/IonTHIAMIN PHOSPHATE

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:13 , GLN A:43 , ARG A:45 , HIS A:90 , SER A:114 , TYR A:134 , THR A:143 , THR A:145 , ILE A:179 , GLY A:181 , VAL A:209 , SER A:210BINDING SITE FOR RESIDUE TPS A 2001
02AC2SOFTWAREGLN F:43 , HIS F:90 , SER F:114 , THR F:143 , THR F:145 , ILE F:179 , GLY F:181 , VAL F:209 , SER F:210BINDING SITE FOR RESIDUE TPS F 2002
03AC3SOFTWAREGLN D:43 , ARG D:45 , HIS D:90 , SER D:114 , GLY D:136 , THR D:143 , THR D:145 , ILE D:179 , GLY D:181 , VAL D:209 , SER D:210BINDING SITE FOR RESIDUE TPS D 2003
04AC4SOFTWARETYR C:13 , GLN C:43 , HIS C:90 , SER C:114 , THR C:139 , THR C:143 , THR C:145 , ILE C:179 , GLY C:180 , GLY C:181 , VAL C:209 , SER C:210BINDING SITE FOR RESIDUE TPS C 2004
05AC5SOFTWARETYR B:13 , GLN B:43 , ARG B:45 , HIS B:90 , SER B:114 , GLY B:136 , THR B:143 , THR B:145 , ILE B:179 , GLY B:181 , VAL B:208 , VAL B:209 , SER B:210BINDING SITE FOR RESIDUE TPS B 2005
06AC6SOFTWAREGLN E:43 , HIS E:90 , SER E:114 , THR E:143 , THR E:145 , ILE E:179 , GLY E:181 , VAL E:209 , SER E:210BINDING SITE FOR RESIDUE TPS E 2006
07AC7SOFTWARETHR A:51 , ASP C:76 , ASP C:95BINDING SITE FOR RESIDUE MG C 541
08AC8SOFTWAREASP A:76 , ASP A:95 , THR C:51BINDING SITE FOR RESIDUE MG A 541
09AC9SOFTWARELEU A:241 , THR A:243 , ASP A:424 , THR A:426 , ILE A:427 , GLU A:428BINDING SITE FOR RESIDUE MG A 542
10BC1SOFTWARETHR B:51 , ASP F:76 , ASP F:95BINDING SITE FOR RESIDUE MG F 541
11BC2SOFTWAREASP D:76 , ASP D:95 , THR E:51BINDING SITE FOR RESIDUE MG D 541
12BC3SOFTWAREALA D:49 , ASP D:50 , THR D:51 , ASP E:76 , ASP E:95BINDING SITE FOR RESIDUE MG D 542
13BC4SOFTWAREASP A:340 , PRO A:341 , GLU A:372BINDING SITE FOR RESIDUE MG A 543
14BC5SOFTWAREASP F:340 , PRO F:341 , GLU F:372BINDING SITE FOR RESIDUE MG F 542
15BC6SOFTWAREASP D:340 , PRO D:341 , GLU D:372BINDING SITE FOR RESIDUE MG D 543
16BC7SOFTWAREASP C:340 , PRO C:341 , GLU C:372BINDING SITE FOR RESIDUE MG C 542
17BC8SOFTWAREASP B:340 , PRO B:341 , GLU B:372BINDING SITE FOR RESIDUE MG B 541
18BC9SOFTWAREASP E:340 , PRO E:341 , GLU E:372BINDING SITE FOR RESIDUE MG E 541

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NL3)

(-) Cis Peptide Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1Asn A:75 -Asp A:76
2Asn B:75 -Asp B:76
3Gly B:343 -Tyr B:344
4Lys B:435 -Gly B:436
5Asn C:75 -Asp C:76
6Gly C:343 -Tyr C:344
7Lys D:47 -Asp D:48
8Ala D:49 -Asp D:50
9Asn D:75 -Asp D:76
10Gly D:343 -Tyr D:344
11Lys D:435 -Gly D:436
12Asn E:75 -Asp E:76
13Gly E:343 -Tyr E:344
14Lys E:435 -Gly E:436
15Asn F:75 -Asp F:76
16Gly F:343 -Tyr F:344
17Lys F:435 -Gly F:436

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NL3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NL3)

(-) Exons   (0, 0)

(no "Exon" information available for 3NL3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:513
 aligned with Q6FV03_CANGA | Q6FV03 from UniProtKB/TrEMBL  Length:540

    Alignment length:539
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531         
         Q6FV03_CANGA     2 KFSKEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYKFVNIGLSTKNSLTTTDEIQSIISNTLKARPLVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAELNKERMKGVDASSGISNELLIQATKIVAFKYKTVAVCTGEFDFIADGTIEGKYSLSKGTNGTSVEDIPCVAVEAGPIEIMGDITASGCSLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQVELIDALYRLTRENTPVTWAPKLTHT 540
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...eeee..........hhhhhhhhhhh....eeeee.-..hhhhhhhhhhhhhhhhhhh...eeee.hhhhhhhhh..eeee.....hhhhhhhhhh...eeeeee.hhhhhhhhhh.......eeee...........-....hhhhhhhhhhhhhhhh.....eeeee......hhhhhhhhh..........eeeehhhhhh..hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhh..eee......hhhhhh....eeeee......hhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhh......eeeeehhhhhhhh..--------------.hhhhhhhhhhhhhhh..eeeee...eeeee.hhhhh..........hhhhh.eeeee...----------hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nl3 A   2 KFSKEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIRE-DADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKN-KKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYKFVNIGLSTKNSLTTTDEIQSIISNTLKARPLVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAEL--------------SNELLIQATKIVAFKYKTVAVCTGEFDFIADGTIEGKYSLSKGTNGTSVEDIPCVAVEAGP----------GCSLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQVELIDALYRLTRENTPVTWAPKLTHT 540
                                    11        21        31        41    | | 51        61        71        81        91       101       111       121       131       141      |151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       | -         -  |    401       411       421       431       441       451  |      -   |   471       481       491       501       511       521       531         
                                                                       46 |                                                                                                 148 |                                                                                                                                                                                                                                  379            394                                                         454        465                                                                           
                                                                         48                                                                                                   150                                                                                                                                                                                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:503
 aligned with Q6FV03_CANGA | Q6FV03 from UniProtKB/TrEMBL  Length:540

    Alignment length:539
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531         
         Q6FV03_CANGA     2 KFSKEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYKFVNIGLSTKNSLTTTDEIQSIISNTLKARPLVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAELNKERMKGVDASSGISNELLIQATKIVAFKYKTVAVCTGEFDFIADGTIEGKYSLSKGTNGTSVEDIPCVAVEAGPIEIMGDITASGCSLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQVELIDALYRLTRENTPVTWAPKLTHT 540
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...eeee..........hhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhhhh...eeee.hhhhhhhh...eeee.....hhhhhhhhhh...eeeeee.hhhhhhhhhh.......eeee............-----hhhhhhhhhhhhhhh.....eeeee......hhhhhhhhh..........eeeehhhhhh..hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhh..eee......hhhhhhhh..eeeee......hhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhh......eeeeehhhhhhhhh.--------------.hhhhhhhhhhhhhhh..eeeee...eeeee.hhhhh.......--.hhhhh.eeee.---------------hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nl3 B   2 KFSKEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNP-----GTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYKFVNIGLSTKNSLTTTDEIQSIISNTLKARPLVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAEL--------------SNELLIQATKIVAFKYKTVAVCTGEFDFIADGTIEGKYSLSKGT--TSVEDIPCVAVE---------------SLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQVELIDALYRLTRENTPVTWAPKLTHT 540
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       | -   |   161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       | -         -  |    401       411       421       431     | 441       451         -     | 471       481       491       501       511       521       531         
                                                                                                                                                                             149   155                                                                                                                                                                                                                             379            394                                        437  |        451             467                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                440                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:506
 aligned with Q6FV03_CANGA | Q6FV03 from UniProtKB/TrEMBL  Length:540

    Alignment length:539
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531         
         Q6FV03_CANGA     2 KFSKEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYKFVNIGLSTKNSLTTTDEIQSIISNTLKARPLVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAELNKERMKGVDASSGISNELLIQATKIVAFKYKTVAVCTGEFDFIADGTIEGKYSLSKGTNGTSVEDIPCVAVEAGPIEIMGDITASGCSLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQVELIDALYRLTRENTPVTWAPKLTHT 540
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...eeee..........hhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhhhh...eee..hhhhhhhhh..eeee.....hhhhhhhhhh...eeeeee..hhhhhhhhhh......eeee............-----hhhhhhhhhhhhhhh.....eeeee......hhhhhhhhh..........eeeehhhhhh..hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhh..eee......hhhhhhhh..eeeee......hhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhh......eeeeehhhhhhhhh.--------------.hhhhhhhhhhhhhhh..eeeee..eeeeee.hhhhh...-----..hhhhh.eeeee....---------hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nl3 C   2 KFSKEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNP-----GTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYKFVNIGLSTKNSLTTTDEIQSIISNTLKARPLVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAEL--------------SNELLIQATKIVAFKYKTVAVCTGEFDFIADGTIEGKYSL-----GTSVEDIPCVAVEAGPI---------GCSLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQVELIDALYRLTRENTPVTWAPKLTHT 540
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       | -   |   161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       | -         -  |    401       411       421       431 |     441       451   |     -   |   471       481       491       501       511       521       531         
                                                                                                                                                                             149   155                                                                                                                                                                                                                             379            394                                    433   439             455       465                                                                           


Chain D from PDB  Type:PROTEIN  Length:504
 aligned with Q6FV03_CANGA | Q6FV03 from UniProtKB/TrEMBL  Length:540

    Alignment length:539
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531         
         Q6FV03_CANGA     2 KFSKEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYKFVNIGLSTKNSLTTTDEIQSIISNTLKARPLVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAELNKERMKGVDASSGISNELLIQATKIVAFKYKTVAVCTGEFDFIADGTIEGKYSLSKGTNGTSVEDIPCVAVEAGPIEIMGDITASGCSLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQVELIDALYRLTRENTPVTWAPKLTHT 540
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...eeee..........hhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhhhh...eee..hhhhhhhhh..eeee.....hhhhhhhhhh...eeeeee.hhhhhhhhhh.......eeee............-----hhhhhhhhhhhhhhh.....eeeee......hhhhhhhhh..........eeeehhhhhh..hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhh..eee......hhhhhhhh..eeeee......hhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhh......eeeeehhhhhhhh..--------------.hhhhhhhhhhhhhhh..eeeee...eeeee.hhhhh........-.hhhhh.eeee.---------------hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nl3 D   2 KFSKEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNP-----GTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYKFVNIGLSTKNSLTTTDEIQSIISNTLKARPLVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAEL--------------SNELLIQATKIVAFKYKTVAVCTGEFDFIADGTIEGKYSLSKGTN-TSVEDIPCVAVE---------------SLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQVELIDALYRLTRENTPVTWAPKLTHT 540
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       | -   |   161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       | -         -  |    401       411       421       431      |441       451         -     | 471       481       491       501       511       521       531         
                                                                                                                                                                             149   155                                                                                                                                                                                                                             379            394                                         438 |        451             467                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                440                                                                                                    


Chain E from PDB  Type:PROTEIN  Length:501
 aligned with Q6FV03_CANGA | Q6FV03 from UniProtKB/TrEMBL  Length:540

    Alignment length:539
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531         
         Q6FV03_CANGA     2 KFSKEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYKFVNIGLSTKNSLTTTDEIQSIISNTLKARPLVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAELNKERMKGVDASSGISNELLIQATKIVAFKYKTVAVCTGEFDFIADGTIEGKYSLSKGTNGTSVEDIPCVAVEAGPIEIMGDITASGCSLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQVELIDALYRLTRENTPVTWAPKLTHT 540
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh...eeee..........hhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhhhh...eeee.hhhhhhhh...eeee.....hhhhhhhhhh...eeeeee.hhhhhhhhhh.......eeee...........------hhhhhhhhhhhhhhh.....eeeee......hhhhhhhhh..........eeeehhhhhh..hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhh..eee......hhhhhhhh..eeeee......hhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhh......eeeeehhhhhhhhh.--------------.hhhhhhhhhhhhhhh..eeeee...eeeee.hhhhh.......--.hhhhh.eeee----------------hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhh....ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nl3 E   2 KFSKEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKN------GTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYKFVNIGLSTKNSLTTTDEIQSIISNTLKARPLVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAEL--------------SNELLIQATKIVAFKYKTVAVCTGEFDFIADGTIEGKYSLSKGT--TSVEDIPCVAV----------------SLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQVELIDALYRLTRENTPVTWAPKLTHT 540
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141      |  -   |   161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       | -         -  |    401       411       421       431     | 441        |-         -     | 471       481       491       501       511       521       531         
                                                                                                                                                                            148    155                                                                                                                                                                                                                             379            394                                        437  |       450              467                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                440                                                                                                    


Chain F from PDB  Type:PROTEIN  Length:502
 aligned with Q6FV03_CANGA | Q6FV03 from UniProtKB/TrEMBL  Length:540

    Alignment length:539
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531         
         Q6FV03_CANGA     2 KFSKEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYKFVNIGLSTKNSLTTTDEIQSIISNTLKARPLVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAELNKERMKGVDASSGISNELLIQATKIVAFKYKTVAVCTGEFDFIADGTIEGKYSLSKGTNGTSVEDIPCVAVEAGPIEIMGDITASGCSLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQVELIDALYRLTRENTPVTWAPKLTHT 540
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------TMP-TENI-3nl3F07 F:12-212                                                                                                                                                                                --------------------------------------------HK-3nl3F01 F:257-527                                                                                                                                                                                                                                                           ------------- Pfam domains (1)
           Pfam domains (2) ----------TMP-TENI-3nl3F08 F:12-212                                                                                                                                                                                --------------------------------------------HK-3nl3F02 F:257-527                                                                                                                                                                                                                                                           ------------- Pfam domains (2)
           Pfam domains (3) ----------TMP-TENI-3nl3F09 F:12-212                                                                                                                                                                                --------------------------------------------HK-3nl3F03 F:257-527                                                                                                                                                                                                                                                           ------------- Pfam domains (3)
           Pfam domains (4) ----------TMP-TENI-3nl3F10 F:12-212                                                                                                                                                                                --------------------------------------------HK-3nl3F04 F:257-527                                                                                                                                                                                                                                                           ------------- Pfam domains (4)
           Pfam domains (5) ----------TMP-TENI-3nl3F11 F:12-212                                                                                                                                                                                --------------------------------------------HK-3nl3F05 F:257-527                                                                                                                                                                                                                                                           ------------- Pfam domains (5)
           Pfam domains (6) ----------TMP-TENI-3nl3F12 F:12-212                                                                                                                                                                                --------------------------------------------HK-3nl3F06 F:257-527                                                                                                                                                                                                                                                           ------------- Pfam domains (6)
         Sec.struct. author ..hhhhh...eeee..........hhhhhhhhhhh...-.eee.---.hhhhhhhhhhhhhhhhhhh...eee..hhhhhhhhh..eeee.....hhhhhhhhhh...eeeeee.hhhhhhhhhh.......eeee.........--------hhhhhhhhhhhhhhh.....eeeee......hhhhhhhhh..........eeeehhhhhh..hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhh..eee......hhhhhh....eeeee......hhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhh......eeeeehhhhhhhh..--------------.hhhhhhhhhhhhhhh..eeeee...eeeee.hhhhh.......--.hhhhh.eeeee....---------hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nl3 F   2 KFSKEQFDYSLYLVTDSGMIPEGKTLYGQVEAGLQNGV-LVQIR---ADTKFFIEEALQIKELCHAHNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTK--------GTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDKTDYKFVNIGLSTKNSLTTTDEIQSIISNTLKARPLVQHITNKVHQNFGANVTLALGSSPIMSEIQSEVNDLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAEL--------------SNELLIQATKIVAFKYKTVAVCTGEFDFIADGTIEGKYSLSKGT--TSVEDIPCVAVEAGPI---------GCSLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQVELIDALYRLTRENTPVTWAPKLTHT 540
                                    11        21        31       |41   |   |51        61        71        81        91       101       111       121       131       141    |    -   |   161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       | -         -  |    401       411       421       431     | 441       451   |     -   |   471       481       491       501       511       521       531         
                                                                39 |  45  49                                                                                              146      155                                                                                                                                                                                                                             379            394                                        437  |            455       465                                                                           
                                                                  41                                                                                                                                                                                                                                                                                                                                                                                                            440
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NL3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NL3)

(-) Pfam Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Clan: Ribokinase (55)
(-)
Clan: TIM_barrel (694)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q6FV03_CANGA | Q6FV03)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004417    hydroxyethylthiazole kinase activity    Catalysis of the reaction: 5-(2-hydroxyethyl)-4-methylthiazole + ATP = 4-methyl-5-(2-phosphoethyl)-thiazole + ADP + 2 H(+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004789    thiamine-phosphate diphosphorylase activity    Catalysis of the reaction: 4-amino-2-methyl-5-diphosphomethylpyrimidine + 4-methyl-5-(2-phosphoethyl)-thiazole + H(+) = diphosphate + thiamine phosphate.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0009228    thiamine biosynthetic process    The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6FV03_CANGA | Q6FV03: 3nl2 3nl5 3nl6 3nm1 3nm3

(-) Related Entries Specified in the PDB File

3nl2 3nl5 3nl6 3nm1 3nm3