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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TETRATRICOPEPTIDE REPEAT DOMAIN PROTEIN Q2S6C5_SALRD FROM SALINIBACTER RUBER. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SRR115C.
 
Authors :  S. Vorobiev, H. Neely, J. Seetharaman, H. Wang, E. L. Foote, C. Ciccosanti, L. Mao, R. Xiao, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  23 Mar 10  (Deposition) - 07 Apr 10  (Release) - 07 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Tetratricopeptide Repeat Domain Protein, Nesg, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Vorobiev, H. Neely, J. Seetharaman, H. Wang, E. L. Foote, C. Ciccosanti, L. Mao, R. Xiao, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Tetratricopeptide Repeat Domain Protein Q2S6C5_salrd From Salinibacter Ruber.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TETRATRICOPEPTIDE REPEAT DOMAIN PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 21-23C
    Expression System Strain: BL21(DE3) +MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SRU_0103
    Organism Scientific: SALINIBACTER RUBER
    Organism Taxid: 309807
    Strain: HAMAP DSM 13855

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3MA5)

(-) Sites  (0, 0)

(no "Site" information available for 3MA5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MA5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3MA5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MA5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MA5)

(-) Exons   (0, 0)

(no "Exon" information available for 3MA5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:90
 aligned with Q2S6C5_SALRD | Q2S6C5 from UniProtKB/TrEMBL  Length:150

    Alignment length:90
                                    68        78        88        98       108       118       128       138       148
         Q2S6C5_SALRD    59 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGVG 148
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 3ma5 A  59 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLE 148
                                    68        78        88        98       108       118       128       138       148


Chain B from PDB  Type:PROTEIN  Length:90
 aligned with Q2S6C5_SALRD | Q2S6C5 from UniProtKB/TrEMBL  Length:150

    Alignment length:90
                                    68        78        88        98       108       118       128       138       148
         Q2S6C5_SALRD    59 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGVG 148
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 3ma5 B  59 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLE 148
                                    68        78        88        98       108       118       128       138       148


Chain C from PDB  Type:PROTEIN  Length:89
 aligned with Q2S6C5_SALRD | Q2S6C5 from UniProtKB/TrEMBL  Length:150

    Alignment length:89
                                    69        79        89        99       109       119       129       139         
         Q2S6C5_SALRD    60 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGVG 148
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 3ma5 C  60 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLE 148
                                    69        79        89        99       109       119       129       139         


Chain D from PDB  Type:PROTEIN  Length:68
 aligned with Q2S6C5_SALRD | Q2S6C5 from UniProtKB/TrEMBL  Length:150

    Alignment length:68
                                    87        97       107       117       127       137        
         Q2S6C5_SALRD    78 SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAE 145
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
           Pfam domains (1) TPR_2-3ma5D01    TPR_8-3ma5D05 D:95-128            ----------------- Pfam domains (1)
           Pfam domains (2) TPR_2-3ma5D02    TPR_8-3ma5D06 D:95-128            ----------------- Pfam domains (2)
           Pfam domains (3) TPR_2-3ma5D03    TPR_8-3ma5D07 D:95-128            ----------------- Pfam domains (3)
           Pfam domains (4) TPR_2-3ma5D04    TPR_8-3ma5D08 D:95-128            ----------------- Pfam domains (4)
         Sec.struct. author ..hhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 3ma5 D  78 SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAE 145
                                    87        97       107       117       127       137
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MA5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MA5)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (0, 0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2S6C5_SALRD | Q2S6C5: 2kcl 2kcv

(-) Related Entries Specified in the PDB File

2kcl THE SAME PROTEIN, NMR STRUCTURE. RELATED ID: SRR115C RELATED DB: TARGETDB
2kcv THE SAME PROTEIN, NMR STRUCTURE.