3KMV - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Biological Unit 8 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF CBM42A FROM CLOSTRIDIUM THERMOCELLUM

Authors :   T. Santos-Silva, V. D. Alves, J. A. M. Prates, C. M. G. A Fontes, M. J. Rom

Date :   11 Nov 09 (Deposition) - 04 Aug 10 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)

Keywords :   Protein:Carboydrate Interactions, Carbohydrate-Binding Module, Beta- Trefoil Fold, Cbm42, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Ribeiro, T. Santos-Silva, V. D. Alves, F. M. Dias, A. S. Luis, J. A. Prates, L. M. Ferreira, M. J. Romao, C. M. Fontes
Family 42 Carbohydrate-Binding Modules Display Multiple Arabinoxylan-Binding Interfaces Presenting Different Ligand Affinities.
Biochim. Biophys. Acta V. 1804 2054 2010
PubMed-ID: 20637315 | Reference-DOI: 10.1016/J.BBAPAP.2010.07.006

Molecule 1 - ALPHA-L-ARABINOFURANOSIDASE B
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET21A
	Expression System Strain	:	BL21 DE3
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	CTHE_0015
	Organism Scientific	:	CLOSTRIDIUM THERMOCELLUM
	Organism Taxid	:	203119
	Strain	:	ATCC 27405

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 34)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CA	8	Ligand/Ion	CALCIUM ION
3	FMT	19	Ligand/Ion	FORMIC ACID
4	GOL	6	Ligand/Ion	GLYCEROL

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	FMT	4	Ligand/Ion	FORMIC ACID
4	GOL	1	Ligand/Ion	GLYCEROL

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	FMT	4	Ligand/Ion	FORMIC ACID
4	GOL	-1	Ligand/Ion	GLYCEROL

Biological Unit 3 (2, 5)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	FMT	4	Ligand/Ion	FORMIC ACID
4	GOL	1	Ligand/Ion	GLYCEROL

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	FMT	-1	Ligand/Ion	FORMIC ACID
4	GOL	1	Ligand/Ion	GLYCEROL

Biological Unit 5 (2, 3)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	FMT	2	Ligand/Ion	FORMIC ACID
4	GOL	1	Ligand/Ion	GLYCEROL

Biological Unit 6 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	FMT	1	Ligand/Ion	FORMIC ACID
4	GOL	1	Ligand/Ion	GLYCEROL

Biological Unit 7 (2, 4)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	FMT	3	Ligand/Ion	FORMIC ACID
4	GOL	-1	Ligand/Ion	GLYCEROL

Biological Unit 8 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CA	-1	Ligand/Ion	CALCIUM ION
3	FMT	1	Ligand/Ion	FORMIC ACID
4	GOL	1	Ligand/Ion	GLYCEROL

Asymmetric Unit (34, 34)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:72 , SER A:73 , ASN A:74 , TYR A:75 , PHE A:113	BINDING SITE FOR RESIDUE GOL A 158
02	AC2	SOFTWARE	PRO A:98 , PRO A:103 , TYR A:105 , ILE A:106 , HOH A:642 , ALA G:51 , SER G:86	BINDING SITE FOR RESIDUE FMT A 159
03	AC3	SOFTWARE	ARG A:71 , ASP A:83 , THR A:85 , HOH A:313	BINDING SITE FOR RESIDUE FMT A 160
04	AC4	SOFTWARE	TYR A:68 , LYS A:81 , HOH A:315 , HOH A:338 , THR F:115	BINDING SITE FOR RESIDUE FMT A 161
05	AC5	SOFTWARE	HIS A:25 , ALA A:26 , ASN A:27 , PHE A:28 , TYR A:65	BINDING SITE FOR RESIDUE FMT A 162
06	AC6	SOFTWARE	ASP A:29 , ALA A:30 , ASP A:76 , LEU A:77 , LEU A:125 , HOH A:556	BINDING SITE FOR RESIDUE CA A 163
07	AC7	SOFTWARE	LYS B:12 , TYR B:22 , ASN B:35 , VAL B:36 , SER B:42 , HOH B:185 , HOH B:564	BINDING SITE FOR RESIDUE FMT B 158
08	AC8	SOFTWARE	HIS B:72 , SER B:73 , ASN B:74 , TYR B:75	BINDING SITE FOR RESIDUE FMT B 159
09	AC9	SOFTWARE	HIS B:25 , ALA B:26 , ASN B:27 , PHE B:28 , TYR B:65 , HOH B:547	BINDING SITE FOR RESIDUE FMT B 160
10	BC1	SOFTWARE	ARG B:31 , ASP B:33 , HOH B:218	BINDING SITE FOR RESIDUE FMT B 161
11	BC2	SOFTWARE	ASP B:29 , ALA B:30 , ASP B:76 , LEU B:77 , LEU B:125 , HOH B:165	BINDING SITE FOR RESIDUE CA B 162
12	BC3	SOFTWARE	HIS C:72 , SER C:73 , ASN C:74 , TYR C:75 , PHE C:113	BINDING SITE FOR RESIDUE GOL C 158
13	BC4	SOFTWARE	GLN C:43 , SER C:145	BINDING SITE FOR RESIDUE FMT C 159
14	BC5	SOFTWARE	HIS C:25 , ALA C:26 , ASN C:27 , PHE C:28 , TYR C:65 , HOH C:549	BINDING SITE FOR RESIDUE FMT C 160
15	BC6	SOFTWARE	LEU C:50 , ALA C:51 , HOH C:316	BINDING SITE FOR RESIDUE FMT C 161
16	BC7	SOFTWARE	SER C:104 , HOH C:172 , HOH C:452	BINDING SITE FOR RESIDUE FMT C 162
17	BC8	SOFTWARE	ASP C:29 , ALA C:30 , ASP C:76 , LEU C:77 , LEU C:125 , HOH C:801	BINDING SITE FOR RESIDUE CA C 163
18	BC9	SOFTWARE	HIS D:72 , SER D:73 , ASN D:74 , TYR D:75 , PHE D:113	BINDING SITE FOR RESIDUE GOL D 158
19	CC1	SOFTWARE	ASP D:29 , ALA D:30 , ASP D:76 , LEU D:77 , LEU D:125 , HOH D:859	BINDING SITE FOR RESIDUE CA D 159
20	CC2	SOFTWARE	HIS E:72 , SER E:73 , ASN E:74 , TYR E:75	BINDING SITE FOR RESIDUE GOL E 158
21	CC3	SOFTWARE	GLY E:67 , TYR E:69 , ASN E:82 , ASP E:83 , THR E:85 , HOH E:626	BINDING SITE FOR RESIDUE FMT E 159
22	CC4	SOFTWARE	HIS E:25 , ALA E:26 , ASN E:27 , PHE E:28 , TYR E:65	BINDING SITE FOR RESIDUE FMT E 160
23	CC5	SOFTWARE	ASP E:29 , ALA E:30 , ASP E:76 , LEU E:77 , LEU E:125 , HOH E:663	BINDING SITE FOR RESIDUE CA E 161
24	CC6	SOFTWARE	MET A:40 , HIS F:72 , SER F:73 , ASN F:74 , TYR F:75 , PHE F:113	BINDING SITE FOR RESIDUE GOL F 158
25	CC7	SOFTWARE	HIS F:25 , ALA F:26 , ASN F:27 , PHE F:28 , TYR F:65 , HOH F:853	BINDING SITE FOR RESIDUE FMT F 159
26	CC8	SOFTWARE	ASP F:29 , ALA F:30 , ASP F:76 , LEU F:77 , LEU F:125 , HOH F:860	BINDING SITE FOR RESIDUE CA F 160
27	CC9	SOFTWARE	HIS G:72 , SER G:73 , ASN G:74 , TYR G:75 , PHE G:113	BINDING SITE FOR RESIDUE ACT G 158
28	DC1	SOFTWARE	PRO A:48	BINDING SITE FOR RESIDUE FMT G 159
29	DC2	SOFTWARE	HOH A:594 , HOH A:762 , HOH G:805	BINDING SITE FOR RESIDUE FMT G 160
30	DC3	SOFTWARE	HIS G:25 , ALA G:26 , ASN G:27 , PHE G:28 , TYR G:65 , HOH G:660	BINDING SITE FOR RESIDUE FMT G 161
31	DC4	SOFTWARE	ASP G:29 , ALA G:30 , ASP G:76 , LEU G:77 , LEU G:125 , HOH G:167	BINDING SITE FOR RESIDUE CA G 162
32	DC5	SOFTWARE	HIS H:72 , SER H:73 , ASN H:74 , TYR H:75	BINDING SITE FOR RESIDUE GOL H 158
33	DC6	SOFTWARE	LYS H:12 , GLN H:43 , ILE H:144 , SER H:145	BINDING SITE FOR RESIDUE FMT H 159
34	DC7	SOFTWARE	ALA H:30 , ASP H:76 , LEU H:77 , LEU H:125 , HOH H:607 , HOH H:814	BINDING SITE FOR RESIDUE CA H 160

(no "SS Bond" information available for 3KMV)

Asymmetric Unit

No.	Residues
1	Thr A:37	-	Pro A:38
2	Thr B:37	-	Pro B:38
3	Thr C:37	-	Pro C:38
4	Thr D:37	-	Pro D:38
5	Thr E:37	-	Pro E:38
6	Thr F:37	-	Pro F:38
7	Thr G:37	-	Pro G:38
8	Thr H:37	-	Pro H:38

(no "SAP(SNP)/Variant" information available for 3KMV)

(no "PROSITE Motif" information available for 3KMV)

(no "Exon" information available for 3KMV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:136
 aligned with A3DBC8_CLOTH | A3DBC8 from UniProtKB/TrEMBL  Length:707

    Alignment length:136
                                    40        50        60        70        80        90       100       110       120       130       140       150       160      
         A3DBC8_CLOTH    31 KAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIIS 166
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeee..eeeee....hhhhh.eeeee........eeeeee.....eeeeee..eeeeee...hhhhhhh..eeeee.......eeeee.....eeeeee..eeeeee..hhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kmv A  10 KAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIIS 145
                                    19        29        39        49        59        69        79        89        99       109       119       129       139

Chain B from PDB  Type:PROTEIN  Length:138
 aligned with A3DBC8_CLOTH | A3DBC8 from UniProtKB/TrEMBL  Length:707

    Alignment length:138
                                    39        49        59        69        79        89        99       109       119       129       139       149       159        
         A3DBC8_CLOTH    30 TKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIISE 167
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee......eeeee..eeeee....hhhhh.eeeee........eeeeee.....eeeeee..eeeeee...hhhhhhhh.eeeee.......eeeee.....eeeeee..eeeeee..hhhhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kmv B   9 TKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIISE 146
                                    18        28        38        48        58        68        78        88        98       108       118       128       138

Chain C from PDB  Type:PROTEIN  Length:137
 aligned with A3DBC8_CLOTH | A3DBC8 from UniProtKB/TrEMBL  Length:707

    Alignment length:137
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       
         A3DBC8_CLOTH    30 TKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIIS 166
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eeeeee..eeeeee...hhhhh.eeeee........eeeeee.....eeeeee..eeeeee...hhhhhhhh.eeeee.......eeeee.....eeeeee..eeeeee..hhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kmv C   9 TKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIIS 145
                                    18        28        38        48        58        68        78        88        98       108       118       128       138

Chain D from PDB  Type:PROTEIN  Length:138
 aligned with A3DBC8_CLOTH | A3DBC8 from UniProtKB/TrEMBL  Length:707

    Alignment length:138
                                    38        48        58        68        78        88        98       108       118       128       138       148       158        
         A3DBC8_CLOTH    29 ITKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIIS 166
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee......eeeee..eeeee....hhhhh.eeeee........eeeeee.....eeeeee..eeeeee...hhhhhhh..eeeee.......eeeee.....eeeeee..eeeeee..hhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kmv D   8 ITKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIIS 145
                                    17        27        37        47        57        67        77        87        97       107       117       127       137

Chain E from PDB  Type:PROTEIN  Length:140
 aligned with A3DBC8_CLOTH | A3DBC8 from UniProtKB/TrEMBL  Length:707

    Alignment length:140
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167
         A3DBC8_CLOTH    28 PITKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIISE 167
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......eeeee..eeeee....hhhhh.eeeee........eeeeee.....eeeeee..eeeeee...hhhhhhh..eeeee.......eeeee.....eeeeee..eeeeee..hhhhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kmv E   7 PITKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIISE 146
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain F from PDB  Type:PROTEIN  Length:137
 aligned with A3DBC8_CLOTH | A3DBC8 from UniProtKB/TrEMBL  Length:707

    Alignment length:137
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       
         A3DBC8_CLOTH    30 TKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIIS 166
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eeeeee..eeeeee...hhhhh.eeeee........eeeeee.....eeeeee..eeeeee...hhhhhhh..eeeee.......eeeee.....eeeeee..eeeeee..hhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kmv F   9 TKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIIS 145
                                    18        28        38        48        58        68        78        88        98       108       118       128       138

Chain G from PDB  Type:PROTEIN  Length:138
 aligned with A3DBC8_CLOTH | A3DBC8 from UniProtKB/TrEMBL  Length:707

    Alignment length:138
                                    39        49        59        69        79        89        99       109       119       129       139       149       159        
         A3DBC8_CLOTH    30 TKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIISE 167
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeeeee..eeeeee...hhhhh.eeeee........eeeeee.....eeeeee..eeeeee...hhhhhhhh.eeeee.......eeeee.....eeeeee..eeeeee..hhhhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kmv G   9 TKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIISE 146
                                    18        28        38        48        58        68        78        88        98       108       118       128       138

Chain H from PDB  Type:PROTEIN  Length:139
 aligned with A3DBC8_CLOTH | A3DBC8 from UniProtKB/TrEMBL  Length:707

    Alignment length:139
                                    37        47        57        67        77        87        97       107       117       127       137       147       157         
         A3DBC8_CLOTH    28 PITKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIIS 166
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --AbfB-3kmvH01 H:9-144                                                                                                                    - Pfam domains (1)
           Pfam domains (2) --AbfB-3kmvH02 H:9-144                                                                                                                    - Pfam domains (2)
           Pfam domains (3) --AbfB-3kmvH03 H:9-144                                                                                                                    - Pfam domains (3)
           Pfam domains (4) --AbfB-3kmvH04 H:9-144                                                                                                                    - Pfam domains (4)
           Pfam domains (5) --AbfB-3kmvH05 H:9-144                                                                                                                    - Pfam domains (5)
           Pfam domains (6) --AbfB-3kmvH06 H:9-144                                                                                                                    - Pfam domains (6)
           Pfam domains (7) --AbfB-3kmvH07 H:9-144                                                                                                                    - Pfam domains (7)
           Pfam domains (8) --AbfB-3kmvH08 H:9-144                                                                                                                    - Pfam domains (8)
         Sec.struct. author ..eeeeeee......eeeee..eeeee....hhhhh.eeeee........eeeeee.....eeeeee..eeeeee...hhhhhhh..eeeee.......eeeee.....eeeeee..eeeeee..hhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kmv H   7 PITKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRHSNYDLSLEKNDGTSLFAESATFKIVPGLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQDATFKIIS 145
                                    16        26        36        46        56        66        76        86        96       106       116       126       136

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3KMV)

(no "CATH Domain" information available for 3KMV)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Trefoil (131)

Family: AbfB (1)

Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (1)

1a	AbfB-3kmvH01	H:9-144
1b	AbfB-3kmvH02	H:9-144
1c	AbfB-3kmvH03	H:9-144
1d	AbfB-3kmvH04	H:9-144
1e	AbfB-3kmvH05	H:9-144
1f	AbfB-3kmvH06	H:9-144
1g	AbfB-3kmvH07	H:9-144
1h	AbfB-3kmvH08	H:9-144

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (A3DBC8_CLOTH | A3DBC8)

molecular function
	GO:0046556	alpha-L-arabinofuranosidase activity	Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0046373	L-arabinose metabolic process	The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0000272	polysaccharide catabolic process	The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.

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Description

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