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3KMV
Asym. Unit
Info
Asym.Unit (217 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (32 KB)
Biol.Unit 3 (31 KB)
Biol.Unit 4 (31 KB)
Biol.Unit 5 (31 KB)
Biol.Unit 6 (30 KB)
Biol.Unit 7 (30 KB)
Biol.Unit 8 (30 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CBM42A FROM CLOSTRIDIUM THERMOCELLUM
Authors
:
T. Santos-Silva, V. D. Alves, J. A. M. Prates, C. M. G. A Fontes, M. J. Rom
Date
:
11 Nov 09 (Deposition) - 04 Aug 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Protein:Carboydrate Interactions, Carbohydrate-Binding Module, Beta- Trefoil Fold, Cbm42, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Ribeiro, T. Santos-Silva, V. D. Alves, F. M. Dias, A. S. Luis, J. A. Prates, L. M. Ferreira, M. J. Romao, C. M. Fontes
Family 42 Carbohydrate-Binding Modules Display Multiple Arabinoxylan-Binding Interfaces Presenting Different Ligand Affinities.
Biochim. Biophys. Acta V. 1804 2054 2010
[
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Hetero Components
(4, 34)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
3e: FORMIC ACID (FMTe)
3f: FORMIC ACID (FMTf)
3g: FORMIC ACID (FMTg)
3h: FORMIC ACID (FMTh)
3i: FORMIC ACID (FMTi)
3j: FORMIC ACID (FMTj)
3k: FORMIC ACID (FMTk)
3l: FORMIC ACID (FMTl)
3m: FORMIC ACID (FMTm)
3n: FORMIC ACID (FMTn)
3o: FORMIC ACID (FMTo)
3p: FORMIC ACID (FMTp)
3q: FORMIC ACID (FMTq)
3r: FORMIC ACID (FMTr)
3s: FORMIC ACID (FMTs)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
8
Ligand/Ion
CALCIUM ION
3
FMT
19
Ligand/Ion
FORMIC ACID
4
GOL
6
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:72 , SER A:73 , ASN A:74 , TYR A:75 , PHE A:113
BINDING SITE FOR RESIDUE GOL A 158
02
AC2
SOFTWARE
PRO A:98 , PRO A:103 , TYR A:105 , ILE A:106 , HOH A:642 , ALA G:51 , SER G:86
BINDING SITE FOR RESIDUE FMT A 159
03
AC3
SOFTWARE
ARG A:71 , ASP A:83 , THR A:85 , HOH A:313
BINDING SITE FOR RESIDUE FMT A 160
04
AC4
SOFTWARE
TYR A:68 , LYS A:81 , HOH A:315 , HOH A:338 , THR F:115
BINDING SITE FOR RESIDUE FMT A 161
05
AC5
SOFTWARE
HIS A:25 , ALA A:26 , ASN A:27 , PHE A:28 , TYR A:65
BINDING SITE FOR RESIDUE FMT A 162
06
AC6
SOFTWARE
ASP A:29 , ALA A:30 , ASP A:76 , LEU A:77 , LEU A:125 , HOH A:556
BINDING SITE FOR RESIDUE CA A 163
07
AC7
SOFTWARE
LYS B:12 , TYR B:22 , ASN B:35 , VAL B:36 , SER B:42 , HOH B:185 , HOH B:564
BINDING SITE FOR RESIDUE FMT B 158
08
AC8
SOFTWARE
HIS B:72 , SER B:73 , ASN B:74 , TYR B:75
BINDING SITE FOR RESIDUE FMT B 159
09
AC9
SOFTWARE
HIS B:25 , ALA B:26 , ASN B:27 , PHE B:28 , TYR B:65 , HOH B:547
BINDING SITE FOR RESIDUE FMT B 160
10
BC1
SOFTWARE
ARG B:31 , ASP B:33 , HOH B:218
BINDING SITE FOR RESIDUE FMT B 161
11
BC2
SOFTWARE
ASP B:29 , ALA B:30 , ASP B:76 , LEU B:77 , LEU B:125 , HOH B:165
BINDING SITE FOR RESIDUE CA B 162
12
BC3
SOFTWARE
HIS C:72 , SER C:73 , ASN C:74 , TYR C:75 , PHE C:113
BINDING SITE FOR RESIDUE GOL C 158
13
BC4
SOFTWARE
GLN C:43 , SER C:145
BINDING SITE FOR RESIDUE FMT C 159
14
BC5
SOFTWARE
HIS C:25 , ALA C:26 , ASN C:27 , PHE C:28 , TYR C:65 , HOH C:549
BINDING SITE FOR RESIDUE FMT C 160
15
BC6
SOFTWARE
LEU C:50 , ALA C:51 , HOH C:316
BINDING SITE FOR RESIDUE FMT C 161
16
BC7
SOFTWARE
SER C:104 , HOH C:172 , HOH C:452
BINDING SITE FOR RESIDUE FMT C 162
17
BC8
SOFTWARE
ASP C:29 , ALA C:30 , ASP C:76 , LEU C:77 , LEU C:125 , HOH C:801
BINDING SITE FOR RESIDUE CA C 163
18
BC9
SOFTWARE
HIS D:72 , SER D:73 , ASN D:74 , TYR D:75 , PHE D:113
BINDING SITE FOR RESIDUE GOL D 158
19
CC1
SOFTWARE
ASP D:29 , ALA D:30 , ASP D:76 , LEU D:77 , LEU D:125 , HOH D:859
BINDING SITE FOR RESIDUE CA D 159
20
CC2
SOFTWARE
HIS E:72 , SER E:73 , ASN E:74 , TYR E:75
BINDING SITE FOR RESIDUE GOL E 158
21
CC3
SOFTWARE
GLY E:67 , TYR E:69 , ASN E:82 , ASP E:83 , THR E:85 , HOH E:626
BINDING SITE FOR RESIDUE FMT E 159
22
CC4
SOFTWARE
HIS E:25 , ALA E:26 , ASN E:27 , PHE E:28 , TYR E:65
BINDING SITE FOR RESIDUE FMT E 160
23
CC5
SOFTWARE
ASP E:29 , ALA E:30 , ASP E:76 , LEU E:77 , LEU E:125 , HOH E:663
BINDING SITE FOR RESIDUE CA E 161
24
CC6
SOFTWARE
MET A:40 , HIS F:72 , SER F:73 , ASN F:74 , TYR F:75 , PHE F:113
BINDING SITE FOR RESIDUE GOL F 158
25
CC7
SOFTWARE
HIS F:25 , ALA F:26 , ASN F:27 , PHE F:28 , TYR F:65 , HOH F:853
BINDING SITE FOR RESIDUE FMT F 159
26
CC8
SOFTWARE
ASP F:29 , ALA F:30 , ASP F:76 , LEU F:77 , LEU F:125 , HOH F:860
BINDING SITE FOR RESIDUE CA F 160
27
CC9
SOFTWARE
HIS G:72 , SER G:73 , ASN G:74 , TYR G:75 , PHE G:113
BINDING SITE FOR RESIDUE ACT G 158
28
DC1
SOFTWARE
PRO A:48
BINDING SITE FOR RESIDUE FMT G 159
29
DC2
SOFTWARE
HOH A:594 , HOH A:762 , HOH G:805
BINDING SITE FOR RESIDUE FMT G 160
30
DC3
SOFTWARE
HIS G:25 , ALA G:26 , ASN G:27 , PHE G:28 , TYR G:65 , HOH G:660
BINDING SITE FOR RESIDUE FMT G 161
31
DC4
SOFTWARE
ASP G:29 , ALA G:30 , ASP G:76 , LEU G:77 , LEU G:125 , HOH G:167
BINDING SITE FOR RESIDUE CA G 162
32
DC5
SOFTWARE
HIS H:72 , SER H:73 , ASN H:74 , TYR H:75
BINDING SITE FOR RESIDUE GOL H 158
33
DC6
SOFTWARE
LYS H:12 , GLN H:43 , ILE H:144 , SER H:145
BINDING SITE FOR RESIDUE FMT H 159
34
DC7
SOFTWARE
ALA H:30 , ASP H:76 , LEU H:77 , LEU H:125 , HOH H:607 , HOH H:814
BINDING SITE FOR RESIDUE CA H 160
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_AbfB_3kmvH01 (H:9-144)
1b: PFAM_AbfB_3kmvH02 (H:9-144)
1c: PFAM_AbfB_3kmvH03 (H:9-144)
1d: PFAM_AbfB_3kmvH04 (H:9-144)
1e: PFAM_AbfB_3kmvH05 (H:9-144)
1f: PFAM_AbfB_3kmvH06 (H:9-144)
1g: PFAM_AbfB_3kmvH07 (H:9-144)
1h: PFAM_AbfB_3kmvH08 (H:9-144)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Trefoil
(131)
Family
:
AbfB
(1)
Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
(1)
1a
AbfB-3kmvH01
H:9-144
1b
AbfB-3kmvH02
H:9-144
1c
AbfB-3kmvH03
H:9-144
1d
AbfB-3kmvH04
H:9-144
1e
AbfB-3kmvH05
H:9-144
1f
AbfB-3kmvH06
H:9-144
1g
AbfB-3kmvH07
H:9-144
1h
AbfB-3kmvH08
H:9-144
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