3K28 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE FROM BACILLUS ANTHRACIS WITH BOUND PYRIDOXAL 5'PHOSPHATE

Authors :   S. S. Sharma, J. S. Brunzelle, Z. Wawrzak, T. Skarina, A. Savchenko, W. F. Anderson

Date :   29 Sep 09 (Deposition) - 19 Jan 10 (Release) - 19 Jan 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Biosynthesis Of Cofactors, Prosthetic Groups, And Carriers, Csgid, Cytoplasm, Isomerase, Porphyrin Biosynthesis, Pyridoxal Phosphate, Structural Genomics, National Institute Of Allergy And Infectious Diseases, National Institutes Of Health, Department Of Health And Human Services, Center For Structural Genomics Of Infectious Diseases (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. S. Sharma, J. S. Brunzelle, Z. Wawrzak, T. Skarina, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'Phosphate
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 2
	Chains	:	A, B, C, D
	EC Number	:	5.4.3.8
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3)-MAGIC
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	BAS4358, BA_4693, GBAA_4693, HEML-2, HEML2
	Organism Common	:	ANTHRAX,ANTHRAX BACTERIUM
	Organism Scientific	:	BACILLUS ANTHRACIS STR. 'AMES ANCESTOR'
	Organism Taxid	:	261594
	Strain	:	AMES ANCESTOR
	Synonym	:	GSA 2, GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE 2, GSA-AT 2

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 74)

No.	Name	Count	Type	Full Name
1	CA	10	Ligand/Ion	CALCIUM ION
2	CL	4	Ligand/Ion	CHLORIDE ION
3	MSE	56	Mod. Amino Acid	SELENOMETHIONINE
4	PLP	4	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE

Biological Unit 1 (2, 30)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	MSE	28	Mod. Amino Acid	SELENOMETHIONINE
4	PLP	2	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE

Biological Unit 2 (2, 30)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	MSE	28	Mod. Amino Acid	SELENOMETHIONINE
4	PLP	2	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:117 , GLY A:118 , THR A:119 , TYR A:145 , HIS A:146 , GLY A:147 , GLU A:207 , ASP A:240 , VAL A:242 , MSE A:243 , LYS A:268 , HOH A:436 , HOH A:641 , HOH A:1249 , THR B:300 , HOH B:469	BINDING SITE FOR RESIDUE PLP A 900
02	AC2	SOFTWARE	ILE A:103 , VAL A:106 , PRO A:107 , ILE A:109 , HOH A:517 , HOH A:1265	BINDING SITE FOR RESIDUE CA A 430
03	AC3	SOFTWARE	HOH A:1248 , HOH A:1264 , HOH A:1431 , HOH A:1432 , HOH A:1433 , HOH A:1434	BINDING SITE FOR RESIDUE CA A 431
04	AC4	SOFTWARE	ASP A:370 , HOH A:505	BINDING SITE FOR RESIDUE CL A 432
05	AC5	SOFTWARE	THR A:300 , HOH A:566 , SER B:117 , GLY B:118 , THR B:119 , TYR B:145 , HIS B:146 , GLY B:147 , GLU B:207 , ASP B:240 , VAL B:242 , MSE B:243 , LYS B:268 , HOH B:439 , HOH B:543 , HOH B:1240	BINDING SITE FOR RESIDUE PLP B 900
06	AC6	SOFTWARE	ILE B:103 , VAL B:106 , PRO B:107 , ILE B:109 , HOH B:507 , HOH B:1262	BINDING SITE FOR RESIDUE CA B 430
07	AC7	SOFTWARE	HOH B:996 , HOH B:1239 , HOH B:1427 , HOH B:1429	BINDING SITE FOR RESIDUE CA B 431
08	AC8	SOFTWARE	SER B:24	BINDING SITE FOR RESIDUE CA B 432
09	AC9	SOFTWARE	ALA B:183 , ASP B:370 , HOH B:486	BINDING SITE FOR RESIDUE CL B 433
10	BC1	SOFTWARE	SER C:117 , GLY C:118 , THR C:119 , TYR C:145 , HIS C:146 , GLU C:207 , ASN C:212 , ASP C:240 , VAL C:242 , MSE C:243 , LYS C:268 , HOH C:444 , HOH C:527 , HOH C:569 , THR D:300 , HOH D:540	BINDING SITE FOR RESIDUE PLP C 900
11	BC2	SOFTWARE	ILE C:103 , VAL C:106 , PRO C:107 , ILE C:109 , HOH C:492 , HOH C:1026	BINDING SITE FOR RESIDUE CA C 430
12	BC3	SOFTWARE	GLU A:195 , PHE C:194 , ASN C:233 , HOH C:433 , HOH C:849 , HOH C:857	BINDING SITE FOR RESIDUE CA C 431
13	BC4	SOFTWARE	ASP C:370 , HOH C:454 , HOH C:812	BINDING SITE FOR RESIDUE CL C 432
14	BC5	SOFTWARE	THR C:300 , SER D:117 , GLY D:118 , THR D:119 , TYR D:145 , HIS D:146 , GLU D:207 , ASN D:212 , ASP D:240 , VAL D:242 , MSE D:243 , LYS D:268 , HOH D:440 , HOH D:500 , HOH D:542 , HOH D:561	BINDING SITE FOR RESIDUE PLP D 900
15	BC6	SOFTWARE	ILE D:103 , VAL D:106 , PRO D:107 , ILE D:109 , HOH D:471 , HOH D:543	BINDING SITE FOR RESIDUE CA D 430
16	BC7	SOFTWARE	HOH D:1253 , HOH D:1261 , HOH D:1423 , HOH D:1424 , HOH D:1425 , HOH D:1426 , HOH D:1430	BINDING SITE FOR RESIDUE CA D 431
17	BC8	SOFTWARE	SER C:24 , HOH C:1450	BINDING SITE FOR RESIDUE CA D 432
18	BC9	SOFTWARE	ALA D:183 , ASP D:370 , HOH D:450	BINDING SITE FOR RESIDUE CL D 433

(no "SS Bond" information available for 3K28)

Asymmetric Unit

No.	Residues
1	Ala A:290	-	Pro A:291
2	Ala B:290	-	Pro B:291
3	Ala C:290	-	Pro C:291
4	Ala D:290	-	Pro D:291

(no "SAP(SNP)/Variant" information available for 3K28)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_3	PS00600	Aminotransferases class-III pyridoxal-phosphate attachment site.	GSA2_BACAN	237-273	4	A:237-273 B:237-273 C:237-273 D:237-273

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_3	PS00600	Aminotransferases class-III pyridoxal-phosphate attachment site.	GSA2_BACAN	237-273	2	A:237-273 B:237-273 - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_3	PS00600	Aminotransferases class-III pyridoxal-phosphate attachment site.	GSA2_BACAN	237-273	2	- - C:237-273 D:237-273

(no "Exon" information available for 3K28)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:423
 aligned with GSA2_BACAN | Q81LD0 from UniProtKB/Swiss-Prot  Length:429

    Alignment length:428
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420        
           GSA2_BACAN     1 MRKFDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAMSKLK 428
               SCOP domains d3k28a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....eeeee..eeee....eeee.hhhhh.......hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhh..eeeeee......hhhhh.......-----......hhhhhh.eeeee..hhhhhhhhhhhhh..eeeeee..............hhhhhhhhhhhhhh.eeeee..........hhhhhhhh....eeeehhhhhh....eeeeehhhhhh................hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeeee.......hhhhhh..hhhhhhhhhhhhhhh.ee...............hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFER_CLASS_3  PDB: A:237-273  ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k28 A   1 mRKFDKSIAAFEEAQDLmPGGVNSPVRAFKSVGmNPLFmERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRmVNSGTEATmSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGV-----PDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNmGVVPPQPGFLEGLREVTEQNGALLIFDEVmTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEImRQVAPSGPIYQAGTLSGNPLAmAAGYETLVQLTPESYVEFERKAEmLEAGLRKAAEKHGIPHHINRAGSmIGIFFTDEPVINYDAAKSSNLQFFAAYYREmVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAmSKLK 428
                            |       10       |20        30   |    40        50        60        70        80        90       100       110   |   120  |    130       140       150       160     | 170       180       190       200       210  |    220       230       240  |    250       260       270       280     | 290       300       310       320       330 |     340       350     | 360       370       380      |390       400       410       420   |    
                            |               18-MSE          34-MSE|                                                                        114-MSE  123-MSE                              160   166                                            213-MSE                       243-MSE                                    286-MSE               308-MSE                 332-MSE                 356-MSE                        387-MSE                              424-MSE
                            1-MSE                                39-MSE

Chain B from PDB  Type:PROTEIN  Length:422
 aligned with GSA2_BACAN | Q81LD0 from UniProtKB/Swiss-Prot  Length:429

    Alignment length:428
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420        
           GSA2_BACAN     1 MRKFDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAMSKLK 428
               SCOP domains d3k28b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....eeeee..eeee....eeee.hhhhh.......hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhh..eeeeee......hhhhh.......------.....hhhhhh.eeeee..hhhhhhhhhhhhh..eeeeee..............hhhhhhhhhhhhhh.eeeee..........hhhhhhhh....eeeehhhhhh....eeeeehhhhhh................hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeeee.......hhhhhh..hhhhhhhhhhhhhhh.ee...............hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFER_CLASS_3  PDB: B:237-273  ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k28 B   1 mRKFDKSIAAFEEAQDLmPGGVNSPVRAFKSVGmNPLFmERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRmVNSGTEATmSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGV------DSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNmGVVPPQPGFLEGLREVTEQNGALLIFDEVmTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEImRQVAPSGPIYQAGTLSGNPLAmAAGYETLVQLTPESYVEFERKAEmLEAGLRKAAEKHGIPHHINRAGSmIGIFFTDEPVINYDAAKSSNLQFFAAYYREmVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAmSKLK 428
                            |       10       |20        30   |    40        50        60        70        80        90       100       110   |   120  |    130       140       150       160      |170       180       190       200       210  |    220       230       240  |    250       260       270       280     | 290       300       310       320       330 |     340       350     | 360       370       380      |390       400       410       420   |    
                            |               18-MSE          34-MSE|                                                                        114-MSE  123-MSE                              160    167                                           213-MSE                       243-MSE                                    286-MSE               308-MSE                 332-MSE                 356-MSE                        387-MSE                              424-MSE
                            1-MSE                                39-MSE

Chain C from PDB  Type:PROTEIN  Length:422
 aligned with GSA2_BACAN | Q81LD0 from UniProtKB/Swiss-Prot  Length:429

    Alignment length:428
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420        
           GSA2_BACAN     1 MRKFDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAMSKLK 428
               SCOP domains d3k28c_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....eeeee..eeee....eeee.hhhhh.......hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhh..eeeeee......hhhhh.......------.....hhhhhh.eeeee..hhhhhhhhhhhhh..eeeeee..............hhhhhhhhhhhhhh.eeeee..........hhhhhhhh....eeeehhhhhh....eeeeehhhhhh................hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeeee.......hhhhhh..hhhhhhhhhhhhhhh.ee...............hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFER_CLASS_3  PDB: C:237-273  ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k28 C   1 mRKFDKSIAAFEEAQDLmPGGVNSPVRAFKSVGmNPLFmERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRmVNSGTEATmSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGV------DSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNmGVVPPQPGFLEGLREVTEQNGALLIFDEVmTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEImRQVAPSGPIYQAGTLSGNPLAmAAGYETLVQLTPESYVEFERKAEmLEAGLRKAAEKHGIPHHINRAGSmIGIFFTDEPVINYDAAKSSNLQFFAAYYREmVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAmSKLK 428
                            |       10       |20        30   |    40        50        60        70        80        90       100       110   |   120  |    130       140       150       160      |170       180       190       200       210  |    220       230       240  |    250       260       270       280     | 290       300       310       320       330 |     340       350     | 360       370       380      |390       400       410       420   |    
                            |               18-MSE          34-MSE|                                                                        114-MSE  123-MSE                              160    167                                           213-MSE                       243-MSE                                    286-MSE               308-MSE                 332-MSE                 356-MSE                        387-MSE                              424-MSE
                            1-MSE                                39-MSE

Chain D from PDB  Type:PROTEIN  Length:420
 aligned with GSA2_BACAN | Q81LD0 from UniProtKB/Swiss-Prot  Length:429

    Alignment length:428
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420        
           GSA2_BACAN     1 MRKFDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAMSKLK 428
               SCOP domains d3k28d_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------------Aminotran_3-3k28D01 D:38-363                                                                                                                                                                                                                                                                                                          ----------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------Aminotran_3-3k28D02 D:38-363                                                                                                                                                                                                                                                                                                          ----------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------------Aminotran_3-3k28D03 D:38-363                                                                                                                                                                                                                                                                                                          ----------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------------Aminotran_3-3k28D04 D:38-363                                                                                                                                                                                                                                                                                                          ----------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....eeeee..eeee....eeee.hhhhh.......hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhh..eeeeee......hhhhh...--------.......hhhhhh.eeeee..hhhhhhhhhhhhh..eeeeee..............hhhhhhhhhhhhhh.eeeee..........hhhhhhhh....eeeehhhhhh....eeeeehhhhhh................hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee..eeeee.......hhhhhh..hhhhhhhhhhhhhhh.ee...............hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFER_CLASS_3  PDB: D:237-273  ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k28 D   1 mRKFDKSIAAFEEAQDLmPGGVNSPVRAFKSVGmNPLFmERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRmVNSGTEATmSALRLARGYTGRNKILKFIGCYHGHGDSLLIKA--------LPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNmGVVPPQPGFLEGLREVTEQNGALLIFDEVmTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEImRQVAPSGPIYQAGTLSGNPLAmAAGYETLVQLTPESYVEFERKAEmLEAGLRKAAEKHGIPHHINRAGSmIGIFFTDEPVINYDAAKSSNLQFFAAYYREmVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAmSKLK 428
                            |       10       |20        30   |    40        50        60        70        80        90       100       110   |   120  |    130       140       150     |   -    |  170       180       190       200       210  |    220       230       240  |    250       260       270       280     | 290       300       310       320       330 |     340       350     | 360       370       380      |390       400       410       420   |    
                            |               18-MSE          34-MSE|                                                                        114-MSE  123-MSE                          156      165                                             213-MSE                       243-MSE                                    286-MSE               308-MSE                 332-MSE                 356-MSE                        387-MSE                              424-MSE
                            1-MSE                                39-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: PLP-dependent transferase-like (627)

Superfamily: PLP-dependent transferases (625)

Family: GABA-aminotransferase-like (167)

Protein domain: automated matches (28)

Bacillus anthracis [TaxId: 261594] (1)

1a	d3k28a_	A:
1b	d3k28b_	B:
1c	d3k28c_	C:
1d	d3k28d_	D:

(no "CATH Domain" information available for 3K28)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PLP_aminotran (240)

Family: Aminotran_3 (44)

Bacillus anthracis (2)

1a	Aminotran_3-3k28D01	D:38-363
1b	Aminotran_3-3k28D02	D:38-363
1c	Aminotran_3-3k28D03	D:38-363
1d	Aminotran_3-3k28D04	D:38-363

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (GSA2_BACAN | Q81LD0)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0042286	glutamate-1-semialdehyde 2,1-aminomutase activity	Catalysis of the reaction: (S)-4-amino-5-oxopentanoate = 5-aminolevulinate.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0030170	pyridoxal phosphate binding	Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
	GO:0008483	transaminase activity	Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
biological process
	GO:0006779	porphyrin-containing compound biosynthetic process	The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
	GO:0006782	protoporphyrinogen IX biosynthetic process	The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX.
	GO:0033014	tetrapyrrole biosynthetic process	The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Ala A:290 - Pro A:291	[ RasMol ]
		Ala B:290 - Pro B:291	[ RasMol ]
		Ala C:290 - Pro C:291	[ RasMol ]
		Ala D:290 - Pro D:291	[ RasMol ]

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	3k28
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 74)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (9, 9)

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