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3K28
Biol. Unit 1
Info
Asym.Unit (304 KB)
Biol.Unit 1 (152 KB)
Biol.Unit 2 (149 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE FROM BACILLUS ANTHRACIS WITH BOUND PYRIDOXAL 5'PHOSPHATE
Authors
:
S. S. Sharma, J. S. Brunzelle, Z. Wawrzak, T. Skarina, A. Savchenko, W. F. Anderson
Date
:
29 Sep 09 (Deposition) - 19 Jan 10 (Release) - 19 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Biosynthesis Of Cofactors, Prosthetic Groups, And Carriers, Csgid, Cytoplasm, Isomerase, Porphyrin Biosynthesis, Pyridoxal Phosphate, Structural Genomics, National Institute Of Allergy And Infectious Diseases, National Institutes Of Health, Department Of Health And Human Services, Center For Structural Genomics Of Infectious Diseases
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. S. Sharma, J. S. Brunzelle, Z. Wawrzak, T. Skarina, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'Phosphate
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 30)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3as: SELENOMETHIONINE (MSEas)
3at: SELENOMETHIONINE (MSEat)
3au: SELENOMETHIONINE (MSEau)
3av: SELENOMETHIONINE (MSEav)
3aw: SELENOMETHIONINE (MSEaw)
3ax: SELENOMETHIONINE (MSEax)
3ay: SELENOMETHIONINE (MSEay)
3az: SELENOMETHIONINE (MSEaz)
3b: SELENOMETHIONINE (MSEb)
3ba: SELENOMETHIONINE (MSEba)
3bb: SELENOMETHIONINE (MSEbb)
3bc: SELENOMETHIONINE (MSEbc)
3bd: SELENOMETHIONINE (MSEbd)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
4b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
4c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
4d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MSE
28
Mod. Amino Acid
SELENOMETHIONINE
4
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
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]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:117 , GLY A:118 , THR A:119 , TYR A:145 , HIS A:146 , GLY A:147 , GLU A:207 , ASP A:240 , VAL A:242 , MSE A:243 , LYS A:268 , HOH A:436 , HOH A:641 , HOH A:1249 , THR B:300 , HOH B:469
BINDING SITE FOR RESIDUE PLP A 900
02
AC2
SOFTWARE
ILE A:103 , VAL A:106 , PRO A:107 , ILE A:109 , HOH A:517 , HOH A:1265
BINDING SITE FOR RESIDUE CA A 430
03
AC3
SOFTWARE
HOH A:1248 , HOH A:1264 , HOH A:1431 , HOH A:1432 , HOH A:1433 , HOH A:1434
BINDING SITE FOR RESIDUE CA A 431
04
AC4
SOFTWARE
ASP A:370 , HOH A:505
BINDING SITE FOR RESIDUE CL A 432
05
AC5
SOFTWARE
THR A:300 , HOH A:566 , SER B:117 , GLY B:118 , THR B:119 , TYR B:145 , HIS B:146 , GLY B:147 , GLU B:207 , ASP B:240 , VAL B:242 , MSE B:243 , LYS B:268 , HOH B:439 , HOH B:543 , HOH B:1240
BINDING SITE FOR RESIDUE PLP B 900
06
AC6
SOFTWARE
ILE B:103 , VAL B:106 , PRO B:107 , ILE B:109 , HOH B:507 , HOH B:1262
BINDING SITE FOR RESIDUE CA B 430
07
AC7
SOFTWARE
HOH B:996 , HOH B:1239 , HOH B:1427 , HOH B:1429
BINDING SITE FOR RESIDUE CA B 431
08
AC8
SOFTWARE
SER B:24
BINDING SITE FOR RESIDUE CA B 432
09
AC9
SOFTWARE
ALA B:183 , ASP B:370 , HOH B:486
BINDING SITE FOR RESIDUE CL B 433
10
BC3
SOFTWARE
GLU A:195 , PHE C:194 , ASN C:233 , HOH C:433 , HOH C:849 , HOH C:857
BINDING SITE FOR RESIDUE CA C 431
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_3 (A:237-273,B:237-273)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_3
PS00600
Aminotransferases class-III pyridoxal-phosphate attachment site.
GSA2_BACAN
237-273
2
A:237-273
B:237-273
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3k28a_ (A:)
1b: SCOP_d3k28b_ (B:)
1c: SCOP_d3k28c_ (C:)
1d: SCOP_d3k28d_ (D:)
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Folds
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(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
automated matches
(28)
Bacillus anthracis [TaxId: 261594]
(1)
1a
d3k28a_
A:
1b
d3k28b_
B:
1c
d3k28c_
C:
1d
d3k28d_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Aminotran_3_3k28D01 (D:38-363)
1b: PFAM_Aminotran_3_3k28D02 (D:38-363)
1c: PFAM_Aminotran_3_3k28D03 (D:38-363)
1d: PFAM_Aminotran_3_3k28D04 (D:38-363)
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Clans
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)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
PLP_aminotran
(240)
Family
:
Aminotran_3
(44)
Bacillus anthracis
(2)
1a
Aminotran_3-3k28D01
D:38-363
1b
Aminotran_3-3k28D02
D:38-363
1c
Aminotran_3-3k28D03
D:38-363
1d
Aminotran_3-3k28D04
D:38-363
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Asymmetric Unit 1
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