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(-) Description

Title :  STRUCTURAL AND BIOCHEMICAL EVIDENCE THAT A TEM-1 {BETA}-LACTAMASE ASN170GLY ACTIVE SITE MUTANT ACTS VIA SUBSTRATE-ASSISTED CATALYSIS
 
Authors :  N. G. Brown, T. G. Palzkill, B. V. V. Prasad, S. Shanker
Date :  21 Sep 09  (Deposition) - 06 Oct 09  (Release) - 15 Dec 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Beta-Lactamase, Enzyme, Antibiotic Resistance, Disulfide Bond, Hydrolase, Plasmid, Transposable Element (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. G. Brown, S. Shanker, B. V. Prasad, T. Palzkill
Structural And Biochemical Evidence That A Tem-1 Beta-Lactamase N170G Active Site Mutant Acts Via Substrate-Assisted Catalysis
J. Biol. Chem. V. 284 33703 2009
PubMed-ID: 19812041  |  Reference-DOI: 10.1074/JBC.M109.053819
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BETA-LACTAMASE TEM
    ChainsA, B, C, D, E, F
    EC Number3.5.2.6
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET-24A(+)
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneBLA, BLAT-3, BLAT-4, BLAT-5, BLAT-6, TEM-1
    MutationYES
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    StrainK-12
    SynonymTEM-1, TEM-2, TEM-3, TEM-4, TEM-5, TEM-6, TEM- 8/CAZ-2, TEM-16/CAZ-7, TEM-24/CAZ-6, IRT-4, PENICILLINASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)A     
Biological Unit 2 (1x) B    
Biological Unit 3 (1x)  C   
Biological Unit 4 (1x)   D  
Biological Unit 5 (1x)    E 
Biological Unit 6 (1x)     F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1EPE6Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 5 (2, 2)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2PO4-1Ligand/IonPHOSPHATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:70 , TYR A:105 , SER A:130 , VAL A:216 , LYS A:234 , SER A:235 , GLY A:236 , ALA A:237 , ARG A:243 , HOH A:313BINDING SITE FOR RESIDUE EPE A 3380
02AC2SOFTWAREGLU A:212 , PHE A:230 , ILE A:231BINDING SITE FOR RESIDUE PO4 A 1
03AC3SOFTWARESER B:70 , SER B:130 , LYS B:234 , SER B:235 , GLY B:236 , ALA B:237 , ARG B:243 , HOH B:318BINDING SITE FOR RESIDUE EPE B 3380
04AC4SOFTWAREGLU B:212 , ARG B:222 , TRP B:229 , ILE B:231BINDING SITE FOR RESIDUE PO4 B 2
05AC5SOFTWARESER C:70 , SER C:130 , LYS C:234 , SER C:235 , ARG C:243BINDING SITE FOR RESIDUE EPE C 3380
06AC6SOFTWARETRP C:165BINDING SITE FOR RESIDUE PO4 C 4
07AC7SOFTWARESER D:70 , SER D:130 , LYS D:234 , SER D:235 , GLY D:236 , ALA D:237 , ARG D:243 , HOH D:303BINDING SITE FOR RESIDUE EPE D 3380
08AC8SOFTWARESER E:130 , SER E:235 , GLY E:236 , HOH E:299BINDING SITE FOR RESIDUE EPE E 3380
09AC9SOFTWAREGLU E:212 , ARG E:222 , PHE E:230 , ILE E:231BINDING SITE FOR RESIDUE PO4 E 3
10BC1SOFTWARESER F:70 , SER F:130 , LYS F:234 , SER F:235 , GLY F:236 , ALA F:237 , ARG F:243BINDING SITE FOR RESIDUE EPE F 3380

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:77 -A:123
2B:77 -B:123
3C:77 -C:123
4D:77 -D:123
5E:77 -E:123
6F:77 -F:123

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Glu A:166 -Pro A:167
2Glu B:166 -Pro B:167
3Glu C:166 -Pro C:167
4Glu D:166 -Pro D:167
5Glu E:166 -Pro E:167
6Glu F:166 -Pro F:167

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (10, 60)

Asymmetric Unit (10, 60)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_BLAT_ECOLX_002 *Q37KBLAT_ECOLX  ---  ---A/B/C/D/E/FQ39K
02UniProtVAR_BLAT_ECOLX_003 *M67LBLAT_ECOLX  ---  ---A/B/C/D/E/FM69L
03UniProtVAR_BLAT_ECOLX_004 *E102KBLAT_ECOLX  ---  ---A/B/C/D/E/FE104K
04UniProtVAR_BLAT_ECOLX_005 *R162HBLAT_ECOLX  ---  ---A/B/C/D/E/FR164H
05UniProtVAR_BLAT_ECOLX_006 *R162SBLAT_ECOLX  ---  ---A/B/C/D/E/FR164S
06UniProtVAR_BLAT_ECOLX_007 *A235TBLAT_ECOLX  ---  ---A/B/C/D/E/FA237T
07UniProtVAR_BLAT_ECOLX_008 *G236SBLAT_ECOLX  ---  ---A/B/C/D/E/FG238S
08UniProtVAR_BLAT_ECOLX_009 *E237KBLAT_ECOLX  ---  ---A/B/C/D/E/FE239K
09UniProtVAR_BLAT_ECOLX_010 *T261MBLAT_ECOLX  ---  ---A/B/C/D/E/FT263M
10UniProtVAR_BLAT_ECOLX_011 *N272DBLAT_ECOLX  ---  ---A/B/C/D/E/FN274D
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_BLAT_ECOLX_002 *Q37KBLAT_ECOLX  ---  ---AQ39K
02UniProtVAR_BLAT_ECOLX_003 *M67LBLAT_ECOLX  ---  ---AM69L
03UniProtVAR_BLAT_ECOLX_004 *E102KBLAT_ECOLX  ---  ---AE104K
04UniProtVAR_BLAT_ECOLX_005 *R162HBLAT_ECOLX  ---  ---AR164H
05UniProtVAR_BLAT_ECOLX_006 *R162SBLAT_ECOLX  ---  ---AR164S
06UniProtVAR_BLAT_ECOLX_007 *A235TBLAT_ECOLX  ---  ---AA237T
07UniProtVAR_BLAT_ECOLX_008 *G236SBLAT_ECOLX  ---  ---AG238S
08UniProtVAR_BLAT_ECOLX_009 *E237KBLAT_ECOLX  ---  ---AE239K
09UniProtVAR_BLAT_ECOLX_010 *T261MBLAT_ECOLX  ---  ---AT263M
10UniProtVAR_BLAT_ECOLX_011 *N272DBLAT_ECOLX  ---  ---AN274D
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_BLAT_ECOLX_002 *Q37KBLAT_ECOLX  ---  ---BQ39K
02UniProtVAR_BLAT_ECOLX_003 *M67LBLAT_ECOLX  ---  ---BM69L
03UniProtVAR_BLAT_ECOLX_004 *E102KBLAT_ECOLX  ---  ---BE104K
04UniProtVAR_BLAT_ECOLX_005 *R162HBLAT_ECOLX  ---  ---BR164H
05UniProtVAR_BLAT_ECOLX_006 *R162SBLAT_ECOLX  ---  ---BR164S
06UniProtVAR_BLAT_ECOLX_007 *A235TBLAT_ECOLX  ---  ---BA237T
07UniProtVAR_BLAT_ECOLX_008 *G236SBLAT_ECOLX  ---  ---BG238S
08UniProtVAR_BLAT_ECOLX_009 *E237KBLAT_ECOLX  ---  ---BE239K
09UniProtVAR_BLAT_ECOLX_010 *T261MBLAT_ECOLX  ---  ---BT263M
10UniProtVAR_BLAT_ECOLX_011 *N272DBLAT_ECOLX  ---  ---BN274D
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_BLAT_ECOLX_002 *Q37KBLAT_ECOLX  ---  ---CQ39K
02UniProtVAR_BLAT_ECOLX_003 *M67LBLAT_ECOLX  ---  ---CM69L
03UniProtVAR_BLAT_ECOLX_004 *E102KBLAT_ECOLX  ---  ---CE104K
04UniProtVAR_BLAT_ECOLX_005 *R162HBLAT_ECOLX  ---  ---CR164H
05UniProtVAR_BLAT_ECOLX_006 *R162SBLAT_ECOLX  ---  ---CR164S
06UniProtVAR_BLAT_ECOLX_007 *A235TBLAT_ECOLX  ---  ---CA237T
07UniProtVAR_BLAT_ECOLX_008 *G236SBLAT_ECOLX  ---  ---CG238S
08UniProtVAR_BLAT_ECOLX_009 *E237KBLAT_ECOLX  ---  ---CE239K
09UniProtVAR_BLAT_ECOLX_010 *T261MBLAT_ECOLX  ---  ---CT263M
10UniProtVAR_BLAT_ECOLX_011 *N272DBLAT_ECOLX  ---  ---CN274D
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_BLAT_ECOLX_002 *Q37KBLAT_ECOLX  ---  ---DQ39K
02UniProtVAR_BLAT_ECOLX_003 *M67LBLAT_ECOLX  ---  ---DM69L
03UniProtVAR_BLAT_ECOLX_004 *E102KBLAT_ECOLX  ---  ---DE104K
04UniProtVAR_BLAT_ECOLX_005 *R162HBLAT_ECOLX  ---  ---DR164H
05UniProtVAR_BLAT_ECOLX_006 *R162SBLAT_ECOLX  ---  ---DR164S
06UniProtVAR_BLAT_ECOLX_007 *A235TBLAT_ECOLX  ---  ---DA237T
07UniProtVAR_BLAT_ECOLX_008 *G236SBLAT_ECOLX  ---  ---DG238S
08UniProtVAR_BLAT_ECOLX_009 *E237KBLAT_ECOLX  ---  ---DE239K
09UniProtVAR_BLAT_ECOLX_010 *T261MBLAT_ECOLX  ---  ---DT263M
10UniProtVAR_BLAT_ECOLX_011 *N272DBLAT_ECOLX  ---  ---DN274D
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 5 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_BLAT_ECOLX_002 *Q37KBLAT_ECOLX  ---  ---EQ39K
02UniProtVAR_BLAT_ECOLX_003 *M67LBLAT_ECOLX  ---  ---EM69L
03UniProtVAR_BLAT_ECOLX_004 *E102KBLAT_ECOLX  ---  ---EE104K
04UniProtVAR_BLAT_ECOLX_005 *R162HBLAT_ECOLX  ---  ---ER164H
05UniProtVAR_BLAT_ECOLX_006 *R162SBLAT_ECOLX  ---  ---ER164S
06UniProtVAR_BLAT_ECOLX_007 *A235TBLAT_ECOLX  ---  ---EA237T
07UniProtVAR_BLAT_ECOLX_008 *G236SBLAT_ECOLX  ---  ---EG238S
08UniProtVAR_BLAT_ECOLX_009 *E237KBLAT_ECOLX  ---  ---EE239K
09UniProtVAR_BLAT_ECOLX_010 *T261MBLAT_ECOLX  ---  ---ET263M
10UniProtVAR_BLAT_ECOLX_011 *N272DBLAT_ECOLX  ---  ---EN274D
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 6 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_BLAT_ECOLX_002 *Q37KBLAT_ECOLX  ---  ---FQ39K
02UniProtVAR_BLAT_ECOLX_003 *M67LBLAT_ECOLX  ---  ---FM69L
03UniProtVAR_BLAT_ECOLX_004 *E102KBLAT_ECOLX  ---  ---FE104K
04UniProtVAR_BLAT_ECOLX_005 *R162HBLAT_ECOLX  ---  ---FR164H
05UniProtVAR_BLAT_ECOLX_006 *R162SBLAT_ECOLX  ---  ---FR164S
06UniProtVAR_BLAT_ECOLX_007 *A235TBLAT_ECOLX  ---  ---FA237T
07UniProtVAR_BLAT_ECOLX_008 *G236SBLAT_ECOLX  ---  ---FG238S
08UniProtVAR_BLAT_ECOLX_009 *E237KBLAT_ECOLX  ---  ---FE239K
09UniProtVAR_BLAT_ECOLX_010 *T261MBLAT_ECOLX  ---  ---FT263M
10UniProtVAR_BLAT_ECOLX_011 *N272DBLAT_ECOLX  ---  ---FN274D
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BETA_LACTAMASE_APS00146 Beta-lactamase class-A active site.BLAT_ECOLX64-79
 
 
 
 
 
  6A:66-81
B:66-81
C:66-81
D:66-81
E:66-81
F:66-81
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BETA_LACTAMASE_APS00146 Beta-lactamase class-A active site.BLAT_ECOLX64-79
 
 
 
 
 
  1A:66-81
-
-
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BETA_LACTAMASE_APS00146 Beta-lactamase class-A active site.BLAT_ECOLX64-79
 
 
 
 
 
  1-
B:66-81
-
-
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BETA_LACTAMASE_APS00146 Beta-lactamase class-A active site.BLAT_ECOLX64-79
 
 
 
 
 
  1-
-
C:66-81
-
-
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BETA_LACTAMASE_APS00146 Beta-lactamase class-A active site.BLAT_ECOLX64-79
 
 
 
 
 
  1-
-
-
D:66-81
-
-
Biological Unit 5 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BETA_LACTAMASE_APS00146 Beta-lactamase class-A active site.BLAT_ECOLX64-79
 
 
 
 
 
  1-
-
-
-
E:66-81
-
Biological Unit 6 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BETA_LACTAMASE_APS00146 Beta-lactamase class-A active site.BLAT_ECOLX64-79
 
 
 
 
 
  1-
-
-
-
-
F:66-81

(-) Exons   (0, 0)

(no "Exon" information available for 3JYI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:263
 aligned with BLAT_ECOLX | P62593 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:263
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283   
           BLAT_ECOLX    24 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 286
               SCOP domains d3jyia_ A: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3jyiA00 A:26-288 DD-peptidase/beta-lactamase superfamily                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeee.....eeeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeee.....eeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) -------------K-----------------------------L----------------------------------K-----------------------------------------------------------H------------------------------------------------------------------------TSK-----------------------M----------D-------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------S---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------------------------------------BETA_LACTAMASE_A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jyi A  26 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELGEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 288
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285   

Chain B from PDB  Type:PROTEIN  Length:263
 aligned with BLAT_ECOLX | P62593 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:263
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283   
           BLAT_ECOLX    24 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 286
               SCOP domains d3jyib_ B: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3jyiB00 B:26-288 DD-peptidase/beta-lactamase superfamily                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeee.....eeeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeee.....eeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) -------------K-----------------------------L----------------------------------K-----------------------------------------------------------H------------------------------------------------------------------------TSK-----------------------M----------D-------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------S---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------------------------------------BETA_LACTAMASE_A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jyi B  26 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELGEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 288
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285   

Chain C from PDB  Type:PROTEIN  Length:263
 aligned with BLAT_ECOLX | P62593 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:263
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283   
           BLAT_ECOLX    24 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 286
               SCOP domains d3jyic_ C: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3jyiC00 C:26-288 DD-peptidase/beta-lactamase superfamily                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeee.....eeeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeee.....eeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) -------------K-----------------------------L----------------------------------K-----------------------------------------------------------H------------------------------------------------------------------------TSK-----------------------M----------D-------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------S---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------------------------------------BETA_LACTAMASE_A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jyi C  26 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELGEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 288
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285   

Chain D from PDB  Type:PROTEIN  Length:263
 aligned with BLAT_ECOLX | P62593 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:263
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283   
           BLAT_ECOLX    24 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 286
               SCOP domains d3jyid_ D: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3jyiD00 D:26-288 DD-peptidase/beta-lactamase superfamily                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeee.....eeeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeee.....eeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) -------------K-----------------------------L----------------------------------K-----------------------------------------------------------H------------------------------------------------------------------------TSK-----------------------M----------D-------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------S---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------------------------------------BETA_LACTAMASE_A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jyi D  26 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELGEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 288
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285   

Chain E from PDB  Type:PROTEIN  Length:263
 aligned with BLAT_ECOLX | P62593 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:263
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283   
           BLAT_ECOLX    24 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 286
               SCOP domains d3jyie_ E: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3jyiE00 E:26-288 DD-peptidase/beta-lactamase superfamily                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeee.....eeeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeee.....eeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) -------------K-----------------------------L----------------------------------K-----------------------------------------------------------H------------------------------------------------------------------------TSK-----------------------M----------D-------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------S---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------------------------------------BETA_LACTAMASE_A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jyi E  26 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELGEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 288
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285   

Chain F from PDB  Type:PROTEIN  Length:263
 aligned with BLAT_ECOLX | P62593 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:263
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283   
           BLAT_ECOLX    24 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 286
               SCOP domains d3jyif_ F: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3jyiF00 F:26-288 DD-peptidase/beta-lactamase superfamily                                                                                                                                                                                                                CATH domains
           Pfam domains (1) -------------------------Beta-lactamase2-3jyiF01 F:51-261                                                                                                                                                                                   --------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------Beta-lactamase2-3jyiF02 F:51-261                                                                                                                                                                                   --------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------Beta-lactamase2-3jyiF03 F:51-261                                                                                                                                                                                   --------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------Beta-lactamase2-3jyiF04 F:51-261                                                                                                                                                                                   --------------------------- Pfam domains (4)
           Pfam domains (5) -------------------------Beta-lactamase2-3jyiF05 F:51-261                                                                                                                                                                                   --------------------------- Pfam domains (5)
           Pfam domains (6) -------------------------Beta-lactamase2-3jyiF06 F:51-261                                                                                                                                                                                   --------------------------- Pfam domains (6)
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeee.....eeeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeee.....eeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) -------------K-----------------------------L----------------------------------K-----------------------------------------------------------H------------------------------------------------------------------------TSK-----------------------M----------D-------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------S---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------------------------------------BETA_LACTAMASE_A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jyi F  26 HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELGEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 288
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric Unit

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (BLAT_ECOLX | P62593)
molecular function
    GO:0008800    beta-lactamase activity    Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0030655    beta-lactam antibiotic catabolic process    The chemical reactions and pathways resulting in the breakdown of a beta-lactam antibiotic, any member of a class of natural or semisynthetic antibiotics whose characteristic feature is a strained, four-membered beta-lactam ring. They include the penicillins and many of the cephalosporins.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BLAT_ECOLX | P625931axb 1bt5 1btl 1ck3 1erm 1ero 1erq 1esu 1fqg 1jtd 1jtg 1jvj 1jwp 1jwv 1jwz 1lhy 1li0 1li9 1m40 1nxy 1ny0 1nym 1nyy 1pzo 1pzp 1s0w 1tem 1xpb 1xxm 1yt4 1zg4 1zg6 2b5r 2v1z 2v20 3c7u 3c7v 3cmz 3dtm 3toi 4dxb 4dxc 4gku 4ibr 4ibx 4id4 4mez 4qy5 4qy6 4r4r 4r4s 4rva 4rx2 4rx3 4zj1 4zj2 4zj3 5hvi 5hw1 5hw5 5i52 5i63 5iq8 5kkf

(-) Related Entries Specified in the PDB File

1btl WILD-TYPE
1fqg ACYL-INTERMEDIATE