3TOI - JenaLib

Asymmetric Unit (9, 18)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_BLAT_ECOLX_003 *	M	67	L	BLAT_ECOLX	---	---	A/B	M	69	L
2	UniProt	VAR_BLAT_ECOLX_004 *	E	102	K	BLAT_ECOLX	---	---	A/B	E	104	K
3	UniProt	VAR_BLAT_ECOLX_005 *	R	162	H	BLAT_ECOLX	---	---	A/B	R	164	H
4	UniProt	VAR_BLAT_ECOLX_006 *	R	162	S	BLAT_ECOLX	---	---	A/B	R	164	S
5	UniProt	VAR_BLAT_ECOLX_007 *	A	235	T	BLAT_ECOLX	---	---	A/B	A	237	T
6	UniProt	VAR_BLAT_ECOLX_008 *	G	236	S	BLAT_ECOLX	---	---	A/B	G	238	S
7	UniProt	VAR_BLAT_ECOLX_009 *	E	237	K	BLAT_ECOLX	---	---	A/B	E	240	K
8	UniProt	VAR_BLAT_ECOLX_010 *	T	261	M	BLAT_ECOLX	---	---	A/B	M	265	M
9	UniProt	VAR_BLAT_ECOLX_011 *	N	272	D	BLAT_ECOLX	---	---	A/B	N	276	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (9, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_BLAT_ECOLX_003 *	M	67	L	BLAT_ECOLX	---	---	A	M	69	L
2	UniProt	VAR_BLAT_ECOLX_004 *	E	102	K	BLAT_ECOLX	---	---	A	E	104	K
3	UniProt	VAR_BLAT_ECOLX_005 *	R	162	H	BLAT_ECOLX	---	---	A	R	164	H
4	UniProt	VAR_BLAT_ECOLX_006 *	R	162	S	BLAT_ECOLX	---	---	A	R	164	S
5	UniProt	VAR_BLAT_ECOLX_007 *	A	235	T	BLAT_ECOLX	---	---	A	A	237	T
6	UniProt	VAR_BLAT_ECOLX_008 *	G	236	S	BLAT_ECOLX	---	---	A	G	238	S
7	UniProt	VAR_BLAT_ECOLX_009 *	E	237	K	BLAT_ECOLX	---	---	A	E	240	K
8	UniProt	VAR_BLAT_ECOLX_010 *	T	261	M	BLAT_ECOLX	---	---	A	M	265	M
9	UniProt	VAR_BLAT_ECOLX_011 *	N	272	D	BLAT_ECOLX	---	---	A	N	276	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (9, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_BLAT_ECOLX_003 *	M	67	L	BLAT_ECOLX	---	---	B	M	69	L
2	UniProt	VAR_BLAT_ECOLX_004 *	E	102	K	BLAT_ECOLX	---	---	B	E	104	K
3	UniProt	VAR_BLAT_ECOLX_005 *	R	162	H	BLAT_ECOLX	---	---	B	R	164	H
4	UniProt	VAR_BLAT_ECOLX_006 *	R	162	S	BLAT_ECOLX	---	---	B	R	164	S
5	UniProt	VAR_BLAT_ECOLX_007 *	A	235	T	BLAT_ECOLX	---	---	B	A	237	T
6	UniProt	VAR_BLAT_ECOLX_008 *	G	236	S	BLAT_ECOLX	---	---	B	G	238	S
7	UniProt	VAR_BLAT_ECOLX_009 *	E	237	K	BLAT_ECOLX	---	---	B	E	240	K
8	UniProt	VAR_BLAT_ECOLX_010 *	T	261	M	BLAT_ECOLX	---	---	B	M	265	M
9	UniProt	VAR_BLAT_ECOLX_011 *	N	272	D	BLAT_ECOLX	---	---	B	N	276	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:248
 aligned with BLAT_ECOLX | P62593 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:248
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277        
           BLAT_ECOLX    38 LGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKH 285
               SCOP domains d3toia_ A: automated matches                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.....eeeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhh.....eeeeeeeee...eeeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -----------------------------L----------------------------------K-----------------------------------------------------------H------------------------------------------------------------------------TSK-----------------------M----------D------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------S--------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --------------------------BETA_LACTAMASE_A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toi A  40 GGARVGYIELDLNSGKVLESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVGELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPVAMATTLRKLLSGELLTLASRQQLMDWMEADKVAGPLLRSVLPAGWFIADKSGAGEHGSRGIIAALGPDGKPSRIVVIYMTGSQATMDERNRQIAEIGASLIGG 289
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       240       250 ||    261       271       281        
                                                                                                                                                                                                                                238|         252|                                   
                                                                                                                                                                                                                                 240          254

Chain A from PDB  Type:PROTEIN  Length:248
 aligned with Q79DR3_ECOLX | Q79DR3 from UniProtKB/TrEMBL  Length:286

    Alignment length:248
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277        
         Q79DR3_ECOLX    38 LGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKH 285
               SCOP domains d3toia_ A: automated matches                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.....eeeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhh.....eeeeeeeee...eeeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -----------------------------L----------------------------------K-----------------------------------------------------------H------------------------------------------------------------------------TSK-----------------------M----------D------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------S--------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toi A  40 GGARVGYIELDLNSGKVLESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVGELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPVAMATTLRKLLSGELLTLASRQQLMDWMEADKVAGPLLRSVLPAGWFIADKSGAGEHGSRGIIAALGPDGKPSRIVVIYMTGSQATMDERNRQIAEIGASLIGG 289
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       240       250 ||    261       271       281        
                                                                                                                                                                                                                                238|         252|                                   
                                                                                                                                                                                                                                 240          254

Chain B from PDB  Type:PROTEIN  Length:245
 aligned with BLAT_ECOLX | P62593 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:245
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279     
           BLAT_ECOLX    40 ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIK 284
               SCOP domains d3toib_ B: automated matches                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....eeeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------------------------L----------------------------------K-----------------------------------------------------------H------------------------------------------------------------------------TSK-----------------------M----------D------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------------------------------------------------------------------------------------------------------------------S-------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------BETA_LACTAMASE_A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toi B  42 ARVGYIELDLNSGKVLESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVGELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPVAMATTLRKLLSGELLTLASRQQLMDWMEADKVAGPLLRSVLPAGWFIADKSGAGEHGSRGIIAALGPDGKPSRIVVIYMTGSQATMDERNRQIAEIGASLIG 288
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      |242       252|      263       273       283     
                                                                                                                                                                                                                              238|         252|                                  
                                                                                                                                                                                                                               240          254

Chain B from PDB  Type:PROTEIN  Length:245
 aligned with Q79DR3_ECOLX | Q79DR3 from UniProtKB/TrEMBL  Length:286

    Alignment length:245
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279     
         Q79DR3_ECOLX    40 ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIK 284
               SCOP domains d3toib_ B: automated matches                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....eeeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------------------------L----------------------------------K-----------------------------------------------------------H------------------------------------------------------------------------TSK-----------------------M----------D------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------------------------------------------------------------------------------------------------------------------S-------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toi B  42 ARVGYIELDLNSGKVLESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVGELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPVAMATTLRKLLSGELLTLASRQQLMDWMEADKVAGPLLRSVLPAGWFIADKSGAGEHGSRGIIAALGPDGKPSRIVVIYMTGSQATMDERNRQIAEIGASLIG 288
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      |242       252|      263       273       283     
                                                                                                                                                                                                                              238|         252|                                  
                                                                                                                                                                                                                               240          254

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 9)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q79DR3_ECOLX | Q79DR3)

molecular function
	GO:0008800	beta-lactamase activity	Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
	GO:0030655	beta-lactam antibiotic catabolic process	The chemical reactions and pathways resulting in the breakdown of a beta-lactam antibiotic, any member of a class of natural or semisynthetic antibiotics whose characteristic feature is a strained, four-membered beta-lactam ring. They include the penicillins and many of the cephalosporins.
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

Chain A,B (BLAT_ECOLX | P62593)

molecular function
	GO:0008800	beta-lactamase activity	Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0030655	beta-lactam antibiotic catabolic process	The chemical reactions and pathways resulting in the breakdown of a beta-lactam antibiotic, any member of a class of natural or semisynthetic antibiotics whose characteristic feature is a strained, four-membered beta-lactam ring. They include the penicillins and many of the cephalosporins.
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (9, 18)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 9)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File