2V20 - JenaLib

Title :   STRUCTURE OF A TEM-1 BETA-LACTAMASE INSERTANT ALLOSTERICALLY REGULATED BY KANAMYCIN AND ANIONS. COMPLEX WITH SULFATE.

Authors :   C. Evrard, H. Barrios, P. Mathonet, P. Soumillion, J. Fastrez, J. P. Dec

Date :   31 May 07 (Deposition) - 24 Jun 08 (Release) - 20 Apr 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.67

Chains :   Asym./Biol. Unit : A

Keywords :   Hydrolase, Insertion Mutant, Antibiotic Resistance, Allosteric Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. N. Volkov, H. Barrios, P. Mathonet, C. Evrard, M. Ubbink, J. P. Declercq, P. Soumillion, J. Fastrez
Engineering An Allosteric Binding Site For Aminoglycosides Into Tem1-Beta-Lactamase.
Chembiochem V. 12 904 2011
PubMed-ID: 21425229 | Reference-DOI: 10.1002/CBIC.201000568

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 3)

Sites (3, 3)

SS Bonds (2, 2)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (10, 10)

Asymmetric/Biological Unit (10, 10)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_BLAT_ECOLX_002 *	Q	37	K	BLAT_ECOLX	---	---	A	Q	13	K
02	UniProt	VAR_BLAT_ECOLX_003 *	M	67	L	BLAT_ECOLX	---	---	A	M	49	L
03	UniProt	VAR_BLAT_ECOLX_004 *	E	102	K	BLAT_ECOLX	---	---	A	K	84	K
04	UniProt	VAR_BLAT_ECOLX_005 *	R	162	H	BLAT_ECOLX	---	---	A	R	144	H
05	UniProt	VAR_BLAT_ECOLX_006 *	R	162	S	BLAT_ECOLX	---	---	A	R	144	S
06	UniProt	VAR_BLAT_ECOLX_007 *	A	235	T	BLAT_ECOLX	---	---	A	A	217	T
07	UniProt	VAR_BLAT_ECOLX_008 *	G	236	S	BLAT_ECOLX	---	---	A	G	218	S
08	UniProt	VAR_BLAT_ECOLX_009 *	E	237	K	BLAT_ECOLX	---	---	A	R	219	K
09	UniProt	VAR_BLAT_ECOLX_010 *	T	261	M	BLAT_ECOLX	---	---	A	T	243	M
10	UniProt	VAR_BLAT_ECOLX_011 *	N	272	D	BLAT_ECOLX	---	---	A	N	254	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:269
 aligned with BLAT_ECOLX | P62593 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:269
                                         39     40                                                                                                                                                                                                                                                   286 
                                    34    |    - |      48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       | 
           BLAT_ECOLX    25 PETLVKVKDAEDQLG------ARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW-   -
               SCOP domains d2v20a_ A: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2v20A00 A:1-269 DD-peptidase/beta-lactamase superfamily                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------Beta-lactamase2-2v20A01 A:31-241                                                                                                                                                                                   ---------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh......eeeeeeee.....eeeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeee.....eeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ------------K-----------------------------------L----------------------------------K-----------------------------------------------------------H------------------------------------------------------------------------TSK-----------------------M----------D--------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------S----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------BETA_LACTAMASE_A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v20 A   1 PETLVKVKDAEDQLCRTSHRPCRVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGRRGSRGIIAALGPDGKPSRIVVIYTTGSRKKTDERNRQIAEIGASLIKHWG 269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (BLAT_ECOLX | P62593)

molecular function
	GO:0008800	beta-lactamase activity	Catalysis of the reaction: a beta-lactam + H2O = a substituted beta-amino acid.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0030655	beta-lactam antibiotic catabolic process	The chemical reactions and pathways resulting in the breakdown of a beta-lactam antibiotic, any member of a class of natural or semisynthetic antibiotics whose characteristic feature is a strained, four-membered beta-lactam ring. They include the penicillins and many of the cephalosporins.
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1axb	TEM-1 BETA-LACTAMASE FROM ESCHERICHIA COLI INHIBITED WITH AN ACYLATION TRANSITION STATE ANALOG
1bt5	CRYSTAL STRUCTURE OF THE IMIPENEM INHIBITED TEM-1 BETA- LACTAMASE FROM ESCHERICHIA COLI
1btl	BETA-LACTAMASE TEM1
1ck3	N276D MUTANT OF ESCHERICHIA COLI TEM-1 BETA-LACTAMASE
1erm	X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A DESIGNED BORONIC ACID INHIBITOR (1R)-1-ACETAMIDO-2- (3- CARBOXYPHENYL)ETHANE BORONIC ACID
1ero	X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A DESIGNED BORONIC ACID INHIBITOR (1R)-2- PHENYLACETAMIDO-2-( 3-CARBOXYPHENYL)ETHYL BORONIC ACID
1erq	X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A DESIGNED BORONIC ACID INHIBITOR (1R)-1-ACETAMIDO-2- (3- CARBOXY-2-HYDROXYPHENYL)ETHYL BORONIC ACID
1esu	S235A MUTANT OF TEM1 BETA-LACTAMASE
1fqg	MOLECULAR STRUCTURE OF THE ACYL-ENZYME INTERMEDIATE IN TEM-1 BETA-LACTAMASE
1jtd	CRYSTAL STRUCTURE OF BETA-LACTAMASE INHIBITOR PROTEIN-II INCOMPLEX WITH TEM-1 BETA-LACTAMASE
1jtg	CRYSTAL STRUCTURE OF TEM-1 BETA-LACTAMASE / BETA-LACTAMASEINHIBITOR PROTEIN COMPLEX
1jvj	CRYSTAL STRUCTURE OF N132A MUTANT OF TEM-1 BETA-LACTAMASEIN COMPLEX WITH A N- FORMIMIDOYL-THIENAMYCINE
1jwp	STRUCTURE OF M182T MUTANT OF TEM-1 BETA- LACTAMASE
1jwv	CRYSTAL STRUCTURE OF G238A MUTANT OF TEM-1 BETA-LACTAMASEIN COMPLEX WITH A BORONIC ACID INHIBITOR (SEFB4)
1jwz	CRYSTAL STRUCTURE OF TEM-64 BETA-LACTAMASE IN COMPLEX WITHA BORONIC ACID INHIBITOR (105)
1lhy	CRYSTAL STRUCTURE OF TEM-30 BETA-LACTAMASE AT 2.0 ANGSTROM
1li0	CRYSTAL STRUCTURE OF TEM-32 BETA-LACTAMASE AT 1.6 ANGSTROM
1li9	CRYSTAL STRUCTURE OF TEM-34 BETA-LACTAMASE AT 1.5 ANGSTROM
1m40	ULTRA HIGH RESOLUTION CRYSTAL STRUCTURE OF TEM-1
1nxy	CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN M182T MUTANT OFTEM-1 AND A BORONIC ACID INHIBITOR (SM2)
1ny0	CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN M182T MUTANT OFTEM-1 AND A BORONIC ACID INHIBITOR (NBF)
1nym	CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN M182T MUTANT OFTEM-1 AND A BORONIC ACID INHIBITOR (CXB)
1nyy	CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN M182T MUTANT OFTEM-1 AND A BORONIC ACID INHIBITOR (105)
1pzo	TEM-1 BETA-LACTAMASE IN COMPLEX WITH A NOVEL, CORE-DISRUPTING, ALLOSTERIC INHIBITOR
1pzp	TEM-1 BETA-LACTAMASE IN COMPLEX WITH A NOVEL, CORE-DISRUPTING, ALLOSTERIC INHIBITOR
1s0w	1B LACTAMSE/ B LACTAMASE INHIBITOR
1tem	6 ALPHA HYDROXYMETHYL PENICILLOIC ACID ACYLATED ON THE TEM-1 BETA-LACTAMASE FROM ESCHERICHIA COLI
1xpb	STRUCTURE OF BETA-LACTAMASE TEM1
1xxm	THE MODULAR ARCHITECTURE OF PROTEIN-PROTEIN BINDING SITE
1yt4	CRYSTAL STRUCTURE OF TEM-76 BETA-LACTAMASE AT 1.4 ANGSTROMRESOLUTION
1zg4	TEM1 BETA LACTAMASE
1zg6	TEM1 BETA LACTAMASE MUTANT S70G
2v1z	STRUCTURE OF A TEM-1 BETA-LACTAMASE INSERTANT ALLOSTERICALLY REGULATED BY KANAMYCIN AND ANIONS.

Description