Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE LIPID BINDING PROTEIN (YP_001304415.1) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.16 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  18 Sep 09  (Deposition) - 10 Nov 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Lipoprotein, Adhesin, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Lipid Binding Protein (Yp_001304415. 1) From Parabacteroides Distasonis Atcc 8503 At 2. 16 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE LIPOPROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BDI_3087, YP_001304415.1
    Organism Scientific: PARABACTEROIDES DISTASONIS ATCC 8503
    Organism Taxid: 435591
    Strain: ATCC 8503 / DSM 20701 / NCTC 11152
    Synonym: PUTATIVE LIPID BINDING PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 65)

Asymmetric Unit (4, 65)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL20Ligand/IonGLYCEROL
3MSE24Mod. Amino AcidSELENOMETHIONINE
4SO420Ligand/IonSULFATE ION
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL8Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4SO48Ligand/IonSULFATE ION
Biological Unit 2 (3, 20)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL6Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4SO46Ligand/IonSULFATE ION
Biological Unit 3 (3, 20)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL6Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4SO46Ligand/IonSULFATE ION

(-) Sites  (41, 41)

Asymmetric Unit (41, 41)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:145 , SER A:146 , GLY A:166 , SER A:167 , HOH A:283 , HOH A:374 , HOH A:1350 , SER B:225 , SER B:226BINDING SITE FOR RESIDUE SO4 A 1
02AC2SOFTWAREGLY E:145 , GLY E:166 , SER E:167 , SER F:225 , SER F:226 , HOH F:278 , HOH F:379BINDING SITE FOR RESIDUE SO4 E 2
03AC3SOFTWARESER A:225 , SER A:226 , HOH A:278 , HOH A:310 , GLY B:145 , GLY B:166 , SER B:167BINDING SITE FOR RESIDUE SO4 B 3
04AC4SOFTWARESER E:225 , SER E:226 , HOH E:274 , HOH E:322 , GLY F:145 , SER F:146 , SER F:167 , HOH F:1246 , HOH F:1329BINDING SITE FOR RESIDUE SO4 F 4
05AC5SOFTWAREGLY C:145 , SER C:146 , GLY C:166 , SER C:167 , HOH C:282 , SER D:225 , SER D:226 , HOH D:297BINDING SITE FOR RESIDUE SO4 C 5
06AC6SOFTWAREGLY C:49 , SER C:50 , GLY C:124 , SER C:125 , HOH C:378 , HOH C:927BINDING SITE FOR RESIDUE SO4 C 6
07AC7SOFTWAREGLY D:49 , SER D:50 , GLY D:124 , SER D:125 , HOH D:628 , HOH D:811BINDING SITE FOR RESIDUE SO4 D 7
08AC8SOFTWAREGLY A:49 , SER A:50 , GLY A:124 , SER A:125 , HOH A:476 , HOH A:657 , HOH A:1165BINDING SITE FOR RESIDUE SO4 A 8
09AC9SOFTWAREGLY B:49 , SER B:50 , GLY B:124 , SER B:125 , HOH B:307 , HOH B:768 , HOH B:873BINDING SITE FOR RESIDUE SO4 B 9
10BC1SOFTWAREGLY E:49 , SER E:50 , GLY E:124 , SER E:125 , HOH E:293 , HOH E:1039BINDING SITE FOR RESIDUE SO4 E 10
11BC2SOFTWAREGLY F:49 , SER F:50 , GLY F:124 , SER F:125 , HOH F:296 , HOH F:896BINDING SITE FOR RESIDUE SO4 F 11
12BC3SOFTWARESER C:225 , SER C:226 , HOH C:278 , HOH C:288 , GLY D:145 , SER D:146 , GLY D:166 , SER D:167 , HOH D:1591BINDING SITE FOR RESIDUE SO4 D 12
13BC4SOFTWARESER B:58 , ASP B:59 , HOH B:419 , GLN E:235BINDING SITE FOR RESIDUE SO4 B 13
14BC5SOFTWAREARG F:217 , LYS F:218BINDING SITE FOR RESIDUE SO4 F 14
15BC6SOFTWAREARG A:217 , LYS A:218BINDING SITE FOR RESIDUE SO4 A 15
16BC7SOFTWAREARG C:217 , LYS C:218BINDING SITE FOR RESIDUE SO4 C 16
17BC8SOFTWAREARG E:217 , LYS E:218 , HOH E:1053 , HOH E:1362BINDING SITE FOR RESIDUE SO4 E 17
18BC9SOFTWAREASP B:41 , TYR B:42 , ASP B:43BINDING SITE FOR RESIDUE SO4 B 18
19CC1SOFTWAREARG D:217 , LYS D:218 , GLN D:235BINDING SITE FOR RESIDUE SO4 D 19
20CC2SOFTWAREARG B:198 , ARG B:217 , LYS B:218 , HOH B:1416BINDING SITE FOR RESIDUE SO4 B 270
21CC3SOFTWAREASP B:41 , HOH B:1087BINDING SITE FOR RESIDUE CL B 271
22CC4SOFTWAREARG B:138 , TYR B:158 , LYS B:159 , HOH B:1031BINDING SITE FOR RESIDUE GOL B 272
23CC5SOFTWAREASP D:74 , TYR D:75 , LYS D:90 , LYS D:93 , TYR D:101 , LYS E:94 , HOH E:1618BINDING SITE FOR RESIDUE GOL D 270
24CC6SOFTWARELYS B:94 , ASP C:74 , LYS C:93 , TYR C:101 , HOH C:1092BINDING SITE FOR RESIDUE GOL C 270
25CC7SOFTWAREASP E:41 , ASP E:43 , GLY E:83BINDING SITE FOR RESIDUE GOL E 270
26CC8SOFTWAREASP F:41 , TYR F:42 , ASP F:43BINDING SITE FOR RESIDUE GOL F 270
27CC9SOFTWARELYS A:94 , ASP B:74 , LYS B:90 , LYS B:93 , TYR B:101BINDING SITE FOR RESIDUE GOL B 273
28DC1SOFTWAREASP A:74 , TYR A:75 , TYR A:101 , HOH A:870 , LYS C:94BINDING SITE FOR RESIDUE GOL A 270
29DC2SOFTWARELYS C:156 , GLY C:157 , ASP C:178BINDING SITE FOR RESIDUE GOL C 271
30DC3SOFTWARESER A:58 , ASP A:59 , LYS A:60 , HOH A:817BINDING SITE FOR RESIDUE GOL A 271
31DC4SOFTWAREASP C:41 , TYR C:42 , ASP C:43 , GLY C:83BINDING SITE FOR RESIDUE GOL C 272
32DC5SOFTWAREASP D:41 , TYR D:42 , GLY D:83BINDING SITE FOR RESIDUE GOL D 271
33DC6SOFTWAREASP A:41 , ASP A:43 , GLY A:83BINDING SITE FOR RESIDUE GOL A 272
34DC7SOFTWARELYS B:250 , LYS B:269 , HOH B:1405BINDING SITE FOR RESIDUE GOL B 274
35DC8SOFTWARELYS F:156 , GLY F:157 , GLN F:176 , LEU F:177 , ASP F:178BINDING SITE FOR RESIDUE GOL F 271
36DC9SOFTWARELYS D:94 , ASP F:74 , LYS F:93 , TYR F:101 , HOH F:604BINDING SITE FOR RESIDUE GOL F 272
37EC1SOFTWAREILE A:92 , LYS A:93 , LYS A:94 , GLY A:95 , PHE A:96 , ASN A:97 , ASP B:74BINDING SITE FOR RESIDUE GOL B 275
38EC2SOFTWAREASP A:74 , LYS C:93 , LYS C:94 , GLY C:95 , PHE C:96 , ASN C:97BINDING SITE FOR RESIDUE GOL A 273
39EC3SOFTWARETYR E:101 , HOH E:1023 , HOH E:1695 , LYS F:94BINDING SITE FOR RESIDUE GOL E 271
40EC4SOFTWAREPHE E:212 , ASP E:213 , LYS E:250 , LYS E:269 , HOH E:1357BINDING SITE FOR RESIDUE GOL E 272
41EC5SOFTWARESER C:58 , ASP C:59 , HOH C:643BINDING SITE FOR RESIDUE GOL C 273

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JX8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3JX8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JX8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JX8)

(-) Exons   (0, 0)

(no "Exon" information available for 3JX8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
 aligned with A6LGH9_PARD8 | A6LGH9 from UniProtKB/TrEMBL  Length:269

    Alignment length:247
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       
         A6LGH9_PARD8    23 DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVK 269
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....eeeee.......eeeee...eeeeee.....eeeeeee.hhhh.eeeeee..eeeeee............eee...eeeeeee....eeeee...eeee...eeeeeeeeeee...eeee...eeeeeeeeeee...eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeee...eeeee...eeeeeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jx8 A  23 DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRmEINmAGSGNVELRGPVKGYKLECNmAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSImGSGSINKVK 269
                                    32        42        52        62        72        82        92       102       112       122       132      |142|      152       162 |     172       182       192       202       212       222       232       242       252       262       
                                                                                                                                              139-MSE                  164-MSE                                                                                         260-MSE     
                                                                                                                                                  143-MSE                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:247
 aligned with A6LGH9_PARD8 | A6LGH9 from UniProtKB/TrEMBL  Length:269

    Alignment length:247
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       
         A6LGH9_PARD8    23 DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVK 269
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....eeeee.......eeeee...eeeeee.....eeeeeee.hhhh.eeeeee..eeeeee............eee...eeeeeee....eeeee...eeee...eeeeeeeeeee...eeee...eeeeeeeeeee...eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeee...eeeee...eeeeeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jx8 B  23 DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRmEINmAGSGNVELRGPVKGYKLECNmAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSImGSGSINKVK 269
                                    32        42        52        62        72        82        92       102       112       122       132      |142|      152       162 |     172       182       192       202       212       222       232       242       252       262       
                                                                                                                                              139-MSE                  164-MSE                                                                                         260-MSE     
                                                                                                                                                  143-MSE                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:247
 aligned with A6LGH9_PARD8 | A6LGH9 from UniProtKB/TrEMBL  Length:269

    Alignment length:247
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       
         A6LGH9_PARD8    23 DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVK 269
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....eeeee.......eeeee...eeeeee.....eeeeeee.hhhh.eeeeee..eeeeee............eee...eeeeeee....eeeee...eeee...eeeeeeeeeee...eeee...eeeeeeeeeee...eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeee...eeeee...eeeeeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jx8 C  23 DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRmEINmAGSGNVELRGPVKGYKLECNmAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSImGSGSINKVK 269
                                    32        42        52        62        72        82        92       102       112       122       132      |142|      152       162 |     172       182       192       202       212       222       232       242       252       262       
                                                                                                                                              139-MSE                  164-MSE                                                                                         260-MSE     
                                                                                                                                                  143-MSE                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:246
 aligned with A6LGH9_PARD8 | A6LGH9 from UniProtKB/TrEMBL  Length:269

    Alignment length:246
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263      
         A6LGH9_PARD8    24 KRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVK 269
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee....eeeee.......eeeee...eeeeee.....eeeeeee.hhhh.eeeeee..eeeeee............eee...eeeeeee....eeeee...eeee...eeeeeeeeeee...eeee...eeeeeeeeeee...eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeee...eeeee...eeeeeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3jx8 D  24 KRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRmEINmAGSGNVELRGPVKGYKLECNmAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSImGSGSINKVK 269
                                    33        43        53        63        73        83        93       103       113       123       133     | 143       153       163|      173       183       193       203       213       223       233       243       253      |263      
                                                                                                                                             139-MSE                  164-MSE                                                                                         260-MSE     
                                                                                                                                                 143-MSE                                                                                                                          


Chain E from PDB  Type:PROTEIN  Length:247
 aligned with A6LGH9_PARD8 | A6LGH9 from UniProtKB/TrEMBL  Length:269

    Alignment length:247
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       
         A6LGH9_PARD8    23 DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVK 269
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....eeeee.......eeeee...eeeeee.....eeeeeee.hhhh.eeeeee..eeeeee............eee...eeeeeee....eeeee...eeee...eeeeeeeeeee...eeee...eeeeeeeeeee...eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeee...eeeee...eeeeeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jx8 E  23 DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRmEINmAGSGNVELRGPVKGYKLECNmAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSImGSGSINKVK 269
                                    32        42        52        62        72        82        92       102       112       122       132      |142|      152       162 |     172       182       192       202       212       222       232       242       252       262       
                                                                                                                                              139-MSE                  164-MSE                                                                                         260-MSE     
                                                                                                                                                  143-MSE                                                                                                                          


Chain F from PDB  Type:PROTEIN  Length:247
 aligned with A6LGH9_PARD8 | A6LGH9 from UniProtKB/TrEMBL  Length:269

    Alignment length:247
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       
         A6LGH9_PARD8    23 DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSIMGSGSINKVK 269
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------DUF2807-3jx8F01 F:140-253                                                                                         ---------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------DUF2807-3jx8F02 F:140-253                                                                                         ---------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------------------------DUF2807-3jx8F03 F:140-253                                                                                         ---------------- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------------------------------------DUF2807-3jx8F04 F:140-253                                                                                         ---------------- Pfam domains (4)
           Pfam domains (5) ---------------------------------------------------------------------------------------------------------------------DUF2807-3jx8F05 F:140-253                                                                                         ---------------- Pfam domains (5)
           Pfam domains (6) ---------------------------------------------------------------------------------------------------------------------DUF2807-3jx8F06 F:140-253                                                                                         ---------------- Pfam domains (6)
           Pfam domains (7) ---------------------------------------------------------------------------------------------------------------------DUF2807-3jx8F07 F:140-253                                                                                         ---------------- Pfam domains (7)
           Pfam domains (8) ---------------------------------------------------------------------------------------------------------------------DUF2807-3jx8F08 F:140-253                                                                                         ---------------- Pfam domains (8)
           Pfam domains (9) ---------------------------------------------------------------------------------------------------------------------DUF2807-3jx8F09 F:140-253                                                                                         ---------------- Pfam domains (9)
          Pfam domains (10) ---------------------------------------------------------------------------------------------------------------------DUF2807-3jx8F10 F:140-253                                                                                         ---------------- Pfam domains (10)
          Pfam domains (11) ---------------------------------------------------------------------------------------------------------------------DUF2807-3jx8F11 F:140-253                                                                                         ---------------- Pfam domains (11)
          Pfam domains (12) ---------------------------------------------------------------------------------------------------------------------DUF2807-3jx8F12 F:140-253                                                                                         ---------------- Pfam domains (12)
         Sec.struct. author ..eee....eeeee.......eeeee...eeeeee.....eeeeeee.hhhh.eeeeee..eeeeee............eee...eeeeeee....eeeee...eeee...eeeeeeeeeee...eeee...eeeeeeeeeee...eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeeee...eeeeeeeeeeeeeeeee...eeeeeeeeeeeeeee...eeeee...eeeeeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jx8 F  23 DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGFNNNSYDLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRmEINmAGSGNVELRGPVKGYKLECNmAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIVGSGEIHYKGDPEISKSImGSGSINKVK 269
                                    32        42        52        62        72        82        92       102       112       122       132      |142|      152       162 |     172       182       192       202       212       222       232       242       252       262       
                                                                                                                                              139-MSE                  164-MSE                                                                                         260-MSE     
                                                                                                                                                  143-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JX8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JX8)

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: 6_Hairpin (120)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3JX8)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3jx8)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3jx8
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  A6LGH9_PARD8 | A6LGH9
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  A6LGH9_PARD8 | A6LGH9
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3JX8)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3JX8)