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3JX8
Biol. Unit 3
Info
Asym.Unit (278 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (91 KB)
Biol.Unit 3 (94 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE LIPID BINDING PROTEIN (YP_001304415.1) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.16 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
18 Sep 09 (Deposition) - 10 Nov 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.16
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Lipoprotein, Adhesin, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Lipid Binding Protein (Yp_001304415. 1) From Parabacteroides Distasonis Atcc 8503 At 2. 16 A Resolution
To Be Published
[
close entry info
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
6
Ligand/Ion
GLYCEROL
3
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
6
Ligand/Ion
SULFATE ION
[
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]
Sites
(14, 14)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC4 (SOFTWARE)
03: BC1 (SOFTWARE)
04: BC2 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC5 (SOFTWARE)
07: BC8 (SOFTWARE)
08: CC5 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
11: DC8 (SOFTWARE)
12: DC9 (SOFTWARE)
13: EC3 (SOFTWARE)
14: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
GLY E:145 , GLY E:166 , SER E:167 , SER F:225 , SER F:226 , HOH F:278 , HOH F:379
BINDING SITE FOR RESIDUE SO4 E 2
02
AC4
SOFTWARE
SER E:225 , SER E:226 , HOH E:274 , HOH E:322 , GLY F:145 , SER F:146 , SER F:167 , HOH F:1246 , HOH F:1329
BINDING SITE FOR RESIDUE SO4 F 4
03
BC1
SOFTWARE
GLY E:49 , SER E:50 , GLY E:124 , SER E:125 , HOH E:293 , HOH E:1039
BINDING SITE FOR RESIDUE SO4 E 10
04
BC2
SOFTWARE
GLY F:49 , SER F:50 , GLY F:124 , SER F:125 , HOH F:296 , HOH F:896
BINDING SITE FOR RESIDUE SO4 F 11
05
BC4
SOFTWARE
SER B:58 , ASP B:59 , HOH B:419 , GLN E:235
BINDING SITE FOR RESIDUE SO4 B 13
06
BC5
SOFTWARE
ARG F:217 , LYS F:218
BINDING SITE FOR RESIDUE SO4 F 14
07
BC8
SOFTWARE
ARG E:217 , LYS E:218 , HOH E:1053 , HOH E:1362
BINDING SITE FOR RESIDUE SO4 E 17
08
CC5
SOFTWARE
ASP D:74 , TYR D:75 , LYS D:90 , LYS D:93 , TYR D:101 , LYS E:94 , HOH E:1618
BINDING SITE FOR RESIDUE GOL D 270
09
CC7
SOFTWARE
ASP E:41 , ASP E:43 , GLY E:83
BINDING SITE FOR RESIDUE GOL E 270
10
CC8
SOFTWARE
ASP F:41 , TYR F:42 , ASP F:43
BINDING SITE FOR RESIDUE GOL F 270
11
DC8
SOFTWARE
LYS F:156 , GLY F:157 , GLN F:176 , LEU F:177 , ASP F:178
BINDING SITE FOR RESIDUE GOL F 271
12
DC9
SOFTWARE
LYS D:94 , ASP F:74 , LYS F:93 , TYR F:101 , HOH F:604
BINDING SITE FOR RESIDUE GOL F 272
13
EC3
SOFTWARE
TYR E:101 , HOH E:1023 , HOH E:1695 , LYS F:94
BINDING SITE FOR RESIDUE GOL E 271
14
EC4
SOFTWARE
PHE E:212 , ASP E:213 , LYS E:250 , LYS E:269 , HOH E:1357
BINDING SITE FOR RESIDUE GOL E 272
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_DUF2807_3jx8F01 (F:140-253)
1b: PFAM_DUF2807_3jx8F02 (F:140-253)
1c: PFAM_DUF2807_3jx8F03 (F:140-253)
1d: PFAM_DUF2807_3jx8F04 (F:140-253)
1e: PFAM_DUF2807_3jx8F05 (F:140-253)
1f: PFAM_DUF2807_3jx8F06 (F:140-253)
1g: PFAM_DUF2807_3jx8F07 (F:140-253)
1h: PFAM_DUF2807_3jx8F08 (F:140-253)
1i: PFAM_DUF2807_3jx8F09 (F:140-253)
1j: PFAM_DUF2807_3jx8F10 (F:140-253)
1k: PFAM_DUF2807_3jx8F11 (F:140-253)
1l: PFAM_DUF2807_3jx8F12 (F:140-253)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
DUF2807
(4)
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
(3)
1a
DUF2807-3jx8F01
F:140-253
1b
DUF2807-3jx8F02
F:140-253
1c
DUF2807-3jx8F03
F:140-253
1d
DUF2807-3jx8F04
F:140-253
1e
DUF2807-3jx8F05
F:140-253
1f
DUF2807-3jx8F06
F:140-253
1g
DUF2807-3jx8F07
F:140-253
1h
DUF2807-3jx8F08
F:140-253
1i
DUF2807-3jx8F09
F:140-253
1j
DUF2807-3jx8F10
F:140-253
1k
DUF2807-3jx8F11
F:140-253
1l
DUF2807-3jx8F12
F:140-253
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Asym.Unit (278 KB)
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