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3JX8
Biol. Unit 1
Info
Asym.Unit (278 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (91 KB)
Biol.Unit 3 (94 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE LIPID BINDING PROTEIN (YP_001304415.1) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.16 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
18 Sep 09 (Deposition) - 10 Nov 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.16
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Lipoprotein, Adhesin, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Lipid Binding Protein (Yp_001304415. 1) From Parabacteroides Distasonis Atcc 8503 At 2. 16 A Resolution
To Be Published
[
close entry info
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
8
Ligand/Ion
GLYCEROL
3
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
8
Ligand/Ion
SULFATE ION
[
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]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC8 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC9 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC6 (SOFTWARE)
12: CC9 (SOFTWARE)
13: DC1 (SOFTWARE)
14: DC3 (SOFTWARE)
15: DC6 (SOFTWARE)
16: DC7 (SOFTWARE)
17: EC1 (SOFTWARE)
18: EC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:145 , SER A:146 , GLY A:166 , SER A:167 , HOH A:283 , HOH A:374 , HOH A:1350 , SER B:225 , SER B:226
BINDING SITE FOR RESIDUE SO4 A 1
02
AC3
SOFTWARE
SER A:225 , SER A:226 , HOH A:278 , HOH A:310 , GLY B:145 , GLY B:166 , SER B:167
BINDING SITE FOR RESIDUE SO4 B 3
03
AC8
SOFTWARE
GLY A:49 , SER A:50 , GLY A:124 , SER A:125 , HOH A:476 , HOH A:657 , HOH A:1165
BINDING SITE FOR RESIDUE SO4 A 8
04
AC9
SOFTWARE
GLY B:49 , SER B:50 , GLY B:124 , SER B:125 , HOH B:307 , HOH B:768 , HOH B:873
BINDING SITE FOR RESIDUE SO4 B 9
05
BC4
SOFTWARE
SER B:58 , ASP B:59 , HOH B:419 , GLN E:235
BINDING SITE FOR RESIDUE SO4 B 13
06
BC6
SOFTWARE
ARG A:217 , LYS A:218
BINDING SITE FOR RESIDUE SO4 A 15
07
BC9
SOFTWARE
ASP B:41 , TYR B:42 , ASP B:43
BINDING SITE FOR RESIDUE SO4 B 18
08
CC2
SOFTWARE
ARG B:198 , ARG B:217 , LYS B:218 , HOH B:1416
BINDING SITE FOR RESIDUE SO4 B 270
09
CC3
SOFTWARE
ASP B:41 , HOH B:1087
BINDING SITE FOR RESIDUE CL B 271
10
CC4
SOFTWARE
ARG B:138 , TYR B:158 , LYS B:159 , HOH B:1031
BINDING SITE FOR RESIDUE GOL B 272
11
CC6
SOFTWARE
LYS B:94 , ASP C:74 , LYS C:93 , TYR C:101 , HOH C:1092
BINDING SITE FOR RESIDUE GOL C 270
12
CC9
SOFTWARE
LYS A:94 , ASP B:74 , LYS B:90 , LYS B:93 , TYR B:101
BINDING SITE FOR RESIDUE GOL B 273
13
DC1
SOFTWARE
ASP A:74 , TYR A:75 , TYR A:101 , HOH A:870 , LYS C:94
BINDING SITE FOR RESIDUE GOL A 270
14
DC3
SOFTWARE
SER A:58 , ASP A:59 , LYS A:60 , HOH A:817
BINDING SITE FOR RESIDUE GOL A 271
15
DC6
SOFTWARE
ASP A:41 , ASP A:43 , GLY A:83
BINDING SITE FOR RESIDUE GOL A 272
16
DC7
SOFTWARE
LYS B:250 , LYS B:269 , HOH B:1405
BINDING SITE FOR RESIDUE GOL B 274
17
EC1
SOFTWARE
ILE A:92 , LYS A:93 , LYS A:94 , GLY A:95 , PHE A:96 , ASN A:97 , ASP B:74
BINDING SITE FOR RESIDUE GOL B 275
18
EC2
SOFTWARE
ASP A:74 , LYS C:93 , LYS C:94 , GLY C:95 , PHE C:96 , ASN C:97
BINDING SITE FOR RESIDUE GOL A 273
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_DUF2807_3jx8F01 (F:140-253)
1b: PFAM_DUF2807_3jx8F02 (F:140-253)
1c: PFAM_DUF2807_3jx8F03 (F:140-253)
1d: PFAM_DUF2807_3jx8F04 (F:140-253)
1e: PFAM_DUF2807_3jx8F05 (F:140-253)
1f: PFAM_DUF2807_3jx8F06 (F:140-253)
1g: PFAM_DUF2807_3jx8F07 (F:140-253)
1h: PFAM_DUF2807_3jx8F08 (F:140-253)
1i: PFAM_DUF2807_3jx8F09 (F:140-253)
1j: PFAM_DUF2807_3jx8F10 (F:140-253)
1k: PFAM_DUF2807_3jx8F11 (F:140-253)
1l: PFAM_DUF2807_3jx8F12 (F:140-253)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
DUF2807
(4)
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
(3)
1a
DUF2807-3jx8F01
F:140-253
1b
DUF2807-3jx8F02
F:140-253
1c
DUF2807-3jx8F03
F:140-253
1d
DUF2807-3jx8F04
F:140-253
1e
DUF2807-3jx8F05
F:140-253
1f
DUF2807-3jx8F06
F:140-253
1g
DUF2807-3jx8F07
F:140-253
1h
DUF2807-3jx8F08
F:140-253
1i
DUF2807-3jx8F09
F:140-253
1j
DUF2807-3jx8F10
F:140-253
1k
DUF2807-3jx8F11
F:140-253
1l
DUF2807-3jx8F12
F:140-253
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