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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  THE X-RAY STRUCTURE OF THE GP15 HEXAMER AND THE MODEL OF THE GP18 PROTEIN FITTED INTO THE CRYO-EM RECONSTRUCTION OF THE CONTRACTED T4 TAIL
 
Authors :  A. Fokine, Z. Zhang, S. Kanamaru, V. D. Bowman, A. Aksyuk, F. Arisaka, V. Rossmann M. G.
Date :  10 Nov 12  (Deposition) - 06 Mar 13  (Release) - 15 May 13  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  16.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,U,V,W,X,Y,Z
Keywords :  Bacteriophage T4, Phage Tail Terminator Protein, Phage Sheath Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Fokine, Z. Zhang, S. Kanamaru, V. D. Bowman, A. A. Aksyuk, F. Arisaka V. B. Rao, M. G. Rossmann
The Molecular Architecture Of The Bacteriophage T4 Neck.
J. Mol. Biol. V. 425 1731 2013
PubMed-ID: 23434847  |  Reference-DOI: 10.1016/J.JMB.2013.02.012
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TAIL CONNECTOR PROTEIN GP15
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: 15
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Synonym: TAIL COMPLETION PROTEIN 15
 
Molecule 2 - TAIL SHEATH PROTEIN GP18
    Chains: U, V, W, X, Y, Z
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: 18
    Mutation: YES
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFUVWXYZ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3J2N)

(-) Sites  (0, 0)

(no "Site" information available for 3J2N)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3J2N)

(-) Cis Peptide Bonds  (48, 48)

Asymmetric/Biological Unit
No.Residues
1Leu A:72 -Pro A:73
2Tyr A:109 -Asn A:110
3Gln A:142 -Pro A:143
4Arg A:183 -Arg A:184
5Leu B:72 -Pro B:73
6Tyr B:109 -Asn B:110
7Gln B:142 -Pro B:143
8Arg B:183 -Arg B:184
9Leu C:72 -Pro C:73
10Tyr C:109 -Asn C:110
11Gln C:142 -Pro C:143
12Arg C:183 -Arg C:184
13Leu D:72 -Pro D:73
14Tyr D:109 -Asn D:110
15Gln D:142 -Pro D:143
16Arg D:183 -Arg D:184
17Leu E:72 -Pro E:73
18Tyr E:109 -Asn E:110
19Gln E:142 -Pro E:143
20Arg E:183 -Arg E:184
21Leu F:72 -Pro F:73
22Tyr F:109 -Asn F:110
23Gln F:142 -Pro F:143
24Arg F:183 -Arg F:184
25Gly U:36 -Pro U:37
26Tyr U:160 -Pro U:161
27Ser U:173 -Ser U:174
28Tyr U:255 -Pro U:256
29Gly V:36 -Pro V:37
30Tyr V:160 -Pro V:161
31Ser V:173 -Ser V:174
32Tyr V:255 -Pro V:256
33Gly W:36 -Pro W:37
34Tyr W:160 -Pro W:161
35Ser W:173 -Ser W:174
36Tyr W:255 -Pro W:256
37Gly X:36 -Pro X:37
38Tyr X:160 -Pro X:161
39Ser X:173 -Ser X:174
40Tyr X:255 -Pro X:256
41Gly Y:36 -Pro Y:37
42Tyr Y:160 -Pro Y:161
43Ser Y:173 -Ser Y:174
44Tyr Y:255 -Pro Y:256
45Gly Z:36 -Pro Z:37
46Tyr Z:160 -Pro Z:161
47Ser Z:173 -Ser Z:174
48Tyr Z:255 -Pro Z:256

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3J2N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3J2N)

(-) Exons   (0, 0)

(no "Exon" information available for 3J2N)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
 aligned with COMPL_BPT4 | P11112 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:232
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  
           COMPL_BPT4     3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAPFKTNILNQNLLQKGATSVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDGDNLSRRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...eeeee....eeeee..eee.hhhhhhhhhhhhh...hhhhhhhhhhh..eeeeeeeeeee...-----------------.......eeeeeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeeeeee.....----...eeeeeeeeeeeee....hhhhh.eeeeee.....eee..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j2n A   3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAP-----------------VVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDG----RRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
                                    12        22        32        42        52        62        72        82    |    -         -  |    112       122       132       142       152       162       172     |   -|      192       202       212       222       232  
                                                                                                               87               105                                                                      178  183                                                   


Chain B from PDB  Type:PROTEIN  Length:211
 aligned with COMPL_BPT4 | P11112 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:232
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  
           COMPL_BPT4     3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAPFKTNILNQNLLQKGATSVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDGDNLSRRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...eeeee....eeeee..eee.hhhhhhhhhhhhh...hhhhhhh......eeeeeeeeeee...-----------------.......eeeeeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeeeeee.....----...eeeeeeeeeeeee....hhhhh.eeeeee.....eee..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j2n B   3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAP-----------------VVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDG----RRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
                                    12        22        32        42        52        62        72        82    |    -         -  |    112       122       132       142       152       162       172     |   -|      192       202       212       222       232  
                                                                                                               87               105                                                                      178  183                                                   


Chain C from PDB  Type:PROTEIN  Length:211
 aligned with COMPL_BPT4 | P11112 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:232
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  
           COMPL_BPT4     3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAPFKTNILNQNLLQKGATSVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDGDNLSRRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...eeeee....eeeee..eee.hhhhhhhhhhhhh...hhhhhhh......eeeeeeeeeee...-----------------.......eeeeeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeee......eeeeeeeeeeeeeee.....----...eeeeeeeeeeeee....hhhhh..eeeee.....eee..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j2n C   3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAP-----------------VVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDG----RRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
                                    12        22        32        42        52        62        72        82    |    -         -  |    112       122       132       142       152       162       172     |   -|      192       202       212       222       232  
                                                                                                               87               105                                                                      178  183                                                   


Chain D from PDB  Type:PROTEIN  Length:211
 aligned with COMPL_BPT4 | P11112 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:232
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  
           COMPL_BPT4     3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAPFKTNILNQNLLQKGATSVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDGDNLSRRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...eeeee....eeeee..eee.hhhhhhhhhhhhh...hhhhhhh......eeeeeeeeeee...-----------------.......eeeeeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeeeeee.....----...eeeeeeeeeeeee....hhhhh.eeeeee.....eee..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j2n D   3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAP-----------------VVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDG----RRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
                                    12        22        32        42        52        62        72        82    |    -         -  |    112       122       132       142       152       162       172     |   -|      192       202       212       222       232  
                                                                                                               87               105                                                                      178  183                                                   


Chain E from PDB  Type:PROTEIN  Length:211
 aligned with COMPL_BPT4 | P11112 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:232
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  
           COMPL_BPT4     3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAPFKTNILNQNLLQKGATSVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDGDNLSRRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...eeeee....eeeee..eee.hhhhhhhhhhhhh...hhhhhhh......eeeeeeeeeee...-----------------.......eeeeeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeeeeee.....----...eeeeeeeeeeeee....hhhhh.eeeeee.....eee..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j2n E   3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAP-----------------VVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDG----RRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
                                    12        22        32        42        52        62        72        82    |    -         -  |    112       122       132       142       152       162       172     |   -|      192       202       212       222       232  
                                                                                                               87               105                                                                      178  183                                                   


Chain F from PDB  Type:PROTEIN  Length:211
 aligned with COMPL_BPT4 | P11112 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:232
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  
           COMPL_BPT4     3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAPFKTNILNQNLLQKGATSVVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDGDNLSRRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...eeeee....eeeee..eee.hhhhhhhhhhhhh...hhhhhhh......eeeeeeeeeee...-----------------.......eeeeeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeeeeeee.....----...eeeeeeeeeeeee....hhhhh.eeeeee.....eee..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j2n F   3 GYFYNSSFRRYATLMGDLFSNIQIKRQLESGDKFIRVPITYASKEHFMMKLNKWTSINSQEDVAKVETILPRINLHLVDFSYNAP-----------------VVSQYNPSPIKMIYELSIFTRYEDDMFQIVEQILPYFQPHFNTTMYEQFGNDIPFKRDIKIVLMSAAIDEAIDG----RRRIEWSLTFEVNGWMYPPVDDAEGLIRTTYTDFHANTRDLPDGEGVFESVD 234
                                    12        22        32        42        52        62        72        82    |    -         -  |    112       122       132       142       152       162       172     |   -|      192       202       212       222       232  
                                                                                                               87               105                                                                      178  183                                                   


Chain U from PDB  Type:PROTEIN  Length:609
 aligned with TSP_BPT4 | P13332 from UniProtKB/Swiss-Prot  Length:659

    Alignment length:626
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640      
             TSP_BPT4    21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIDYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTGKNYAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGEKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDARQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNHKYQYDKYNDVNRWVPLAADIAGLCARTDNVSQTWMSPAGYNRGQILNVIKLAIETRQAQRDRLYQEAINPVTGTGGDGYVLYGDKTATSVPSPFDRINVRRLFNMLKTNIGRSSKYRLFELNNAFTRSSFRTETAQYLQGNKALGGIYEYRVVCDTTNNTPSVIDRNEFVATFYIQPARSINYITLNFVATA 646
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..........eee..hhhhhhhhh.....hhhhhhhhhh......eeeeee................eeeeeee.........eeeeee...eeeeeeeeeee.....eeeee..hhhhhhhhhhh.........eeeee.........eeeeeee............hhhhhh.hhhhhhhhhhh...eeee...hhhhh.eeeeeeehhhhhhhhh.eeeee....eee.hhhhh.........eeeeeeee..eeeeeeeee.............hhhhhhhh.....eeee.........eeee...........hhhhhhhhhhhhh.........ee.hhhh..hhhhhhhhhhhhhhhhhhhh...ee...hhhhhh..hhhhhhhhhhhhh.................eeee..eeeeee....eeeeeehhhhhhhhhhhh...-----------.............--.hhhhhhh...ee.eee....eee.............----.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........................eeeeee........eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j2n U  21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRWVPLAADIAGLCARTDNV-----------RGQILNVIKLAIE--QAQRDRLYQEAINPVTGTGGDGYVLYGDKTATSVPSP----NVRRLFNMLKTNIGRSSKYRLFELNNAFTRSSFRTETAQYLQGNKALGGIYEYRVVCDTTNNTPSVIDRNEFVATFYIQPARSINYITLNFVATA 646
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   |     -     | 500       | -|      520       530       540      |  - |     560       570       580       590       600       610       620       630       640      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         484         496         508  |                                 547  552                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    511                                                                                                                                       


Chain V from PDB  Type:PROTEIN  Length:609
 aligned with TSP_BPT4 | P13332 from UniProtKB/Swiss-Prot  Length:659

    Alignment length:626
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640      
             TSP_BPT4    21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIDYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTGKNYAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGEKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDARQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNHKYQYDKYNDVNRWVPLAADIAGLCARTDNVSQTWMSPAGYNRGQILNVIKLAIETRQAQRDRLYQEAINPVTGTGGDGYVLYGDKTATSVPSPFDRINVRRLFNMLKTNIGRSSKYRLFELNNAFTRSSFRTETAQYLQGNKALGGIYEYRVVCDTTNNTPSVIDRNEFVATFYIQPARSINYITLNFVATA 646
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee...........ee..hhhhhhhhh.....hhhhhhhhhh......eeeeee................eeeeeee.........eeeeee...eeeeeeeeeee.....eeeee..hhhhhhhhhhh.........eeeee.........eeeeeee............hhhhhh.hhhhhhhhhhh...eeee...hhhhh.eeeeeeehhhhhhhhh.eeeee....eee.hhhhh.........eeeeeeee..eeeeeeeee.............hhhhhhhh.....eeee.........eeee...........hhhhhhhhhhhhh.........ee.hhhh..hhhhhhhhhhhhhhhhhhhh...ee...hhhhhh..hhhhhhhhhhhhh.................eeee..eeeeee....eeeeeehhhhhhhhhhhh...-----------.............--.hhhhhhh...ee.eee....eee.............----.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........................eeeeee........eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j2n V  21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRWVPLAADIAGLCARTDNV-----------RGQILNVIKLAIE--QAQRDRLYQEAINPVTGTGGDGYVLYGDKTATSVPSP----NVRRLFNMLKTNIGRSSKYRLFELNNAFTRSSFRTETAQYLQGNKALGGIYEYRVVCDTTNNTPSVIDRNEFVATFYIQPARSINYITLNFVATA 646
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   |     -     | 500       | -|      520       530       540      |  - |     560       570       580       590       600       610       620       630       640      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         484         496         508  |                                 547  552                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    511                                                                                                                                       


Chain W from PDB  Type:PROTEIN  Length:609
 aligned with TSP_BPT4 | P13332 from UniProtKB/Swiss-Prot  Length:659

    Alignment length:626
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640      
             TSP_BPT4    21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIDYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTGKNYAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGEKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDARQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNHKYQYDKYNDVNRWVPLAADIAGLCARTDNVSQTWMSPAGYNRGQILNVIKLAIETRQAQRDRLYQEAINPVTGTGGDGYVLYGDKTATSVPSPFDRINVRRLFNMLKTNIGRSSKYRLFELNNAFTRSSFRTETAQYLQGNKALGGIYEYRVVCDTTNNTPSVIDRNEFVATFYIQPARSINYITLNFVATA 646
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..........eee..hhhhhhhhh.....hhhhhhhhhh......eeeeee................eeeeeee.........eeeeee...eeeeeeeeeee.....eeeee..hhhhhhhhhhh.........eeeee.........eeeeeee............hhhhhh.hhhhhhhhhhh...eeee...hhhhh.eeeeeeehhhhhhhhh.eeeee....eee.hhhhh.........eeeeeeee..eeeeeeeee.............hhhhhhhh.....eeee.........eeee...........hhhhhhhhhhhhh.........ee.hhhh..hhhhhhhhhhhhhhhhhhhh...ee...hhhhhh..hhhhhhhhhhhhh.................eeee..eeeeee....eeeeeehhhhhhhhhhhh...-----------.............--.hhhhhhh...ee.eee....eee.............----.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........................eeeeee........eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j2n W  21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRWVPLAADIAGLCARTDNV-----------RGQILNVIKLAIE--QAQRDRLYQEAINPVTGTGGDGYVLYGDKTATSVPSP----NVRRLFNMLKTNIGRSSKYRLFELNNAFTRSSFRTETAQYLQGNKALGGIYEYRVVCDTTNNTPSVIDRNEFVATFYIQPARSINYITLNFVATA 646
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   |     -     | 500       | -|      520       530       540      |  - |     560       570       580       590       600       610       620       630       640      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         484         496         508  |                                 547  552                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    511                                                                                                                                       


Chain X from PDB  Type:PROTEIN  Length:609
 aligned with TSP_BPT4 | P13332 from UniProtKB/Swiss-Prot  Length:659

    Alignment length:626
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640      
             TSP_BPT4    21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIDYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTGKNYAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGEKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDARQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNHKYQYDKYNDVNRWVPLAADIAGLCARTDNVSQTWMSPAGYNRGQILNVIKLAIETRQAQRDRLYQEAINPVTGTGGDGYVLYGDKTATSVPSPFDRINVRRLFNMLKTNIGRSSKYRLFELNNAFTRSSFRTETAQYLQGNKALGGIYEYRVVCDTTNNTPSVIDRNEFVATFYIQPARSINYITLNFVATA 646
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..........eee..hhhhhhhhh.....hhhhhhhhhh......eeeeee................eeeeeee.........eeeeee...eeeeeeeeeee.....eeeee..hhhhhhhhhhh.........eeeee.........eeeeeee............hhhhhh.hhhhhhhhhhh...eeee...hhhhh.eeeeeeehhhhhhhhh.eeeee....eee.hhhhh.........eeeeeeee..eeeeeeeee.............hhhhhhhh.....eeee.........eeee...........hhhhhhhhhhhhh.........ee.hhhh..hhhhhhhhhhhhhhhhhhhh...ee...hhhhhh..hhhhhhhhhhhhh.................eeee..eeeeee....eeeeeehhhhhhhhhhhh...-----------.............--.hhhhhhh...ee.eee....eee.............----.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........................eeeeee........eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j2n X  21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRWVPLAADIAGLCARTDNV-----------RGQILNVIKLAIE--QAQRDRLYQEAINPVTGTGGDGYVLYGDKTATSVPSP----NVRRLFNMLKTNIGRSSKYRLFELNNAFTRSSFRTETAQYLQGNKALGGIYEYRVVCDTTNNTPSVIDRNEFVATFYIQPARSINYITLNFVATA 646
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   |     -     | 500       | -|      520       530       540      |  - |     560       570       580       590       600       610       620       630       640      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         484         496         508  |                                 547  552                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    511                                                                                                                                       


Chain Y from PDB  Type:PROTEIN  Length:609
 aligned with TSP_BPT4 | P13332 from UniProtKB/Swiss-Prot  Length:659

    Alignment length:626
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640      
             TSP_BPT4    21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIDYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTGKNYAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGEKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDARQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNHKYQYDKYNDVNRWVPLAADIAGLCARTDNVSQTWMSPAGYNRGQILNVIKLAIETRQAQRDRLYQEAINPVTGTGGDGYVLYGDKTATSVPSPFDRINVRRLFNMLKTNIGRSSKYRLFELNNAFTRSSFRTETAQYLQGNKALGGIYEYRVVCDTTNNTPSVIDRNEFVATFYIQPARSINYITLNFVATA 646
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..........eee..hhhhhhhhh.....hhhhhhhhhh......eeeeee................eeeeeee.........eeeeee...eeeeeeeeeee.....eeeee..hhhhhhhhhhh.........eeeee.........eeeeeee............hhhhhh.hhhhhhhhhhh...eeee...hhhhh.eeeeeeehhhhhhhhh.eeeee....eee.hhhhh.........eeeeeeee..eeeeeeeee.............hhhhhhhh.....eeee.........eeee...........hhhhhhhhhhhhh.........ee.hhhh..hhhhhhhhhhhhhhhhhhhh...ee...hhhhhh..hhhhhhhhhhhhh.................eeee..eeeeee....eeeeeehhhhhhhhhhhh...-----------.............--.hhhhhhh...ee.eee....eee.............----.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........................eeeeee........eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j2n Y  21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRWVPLAADIAGLCARTDNV-----------RGQILNVIKLAIE--QAQRDRLYQEAINPVTGTGGDGYVLYGDKTATSVPSP----NVRRLFNMLKTNIGRSSKYRLFELNNAFTRSSFRTETAQYLQGNKALGGIYEYRVVCDTTNNTPSVIDRNEFVATFYIQPARSINYITLNFVATA 646
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   |     -     | 500       | -|      520       530       540      |  - |     560       570       580       590       600       610       620       630       640      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         484         496         508  |                                 547  552                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    511                                                                                                                                       


Chain Z from PDB  Type:PROTEIN  Length:609
 aligned with TSP_BPT4 | P13332 from UniProtKB/Swiss-Prot  Length:659

    Alignment length:626
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640      
             TSP_BPT4    21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIDYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTGKNYAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGEKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDARQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNHKYQYDKYNDVNRWVPLAADIAGLCARTDNVSQTWMSPAGYNRGQILNVIKLAIETRQAQRDRLYQEAINPVTGTGGDGYVLYGDKTATSVPSPFDRINVRRLFNMLKTNIGRSSKYRLFELNNAFTRSSFRTETAQYLQGNKALGGIYEYRVVCDTTNNTPSVIDRNEFVATFYIQPARSINYITLNFVATA 646
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..........eee..hhhhhhhhh.....hhhhhhhhhh......eeeeee................eeeeeee.........eeeeee...eeeeeeeeeee.....eeeee..hhhhhhhhhhh.........eeeee.........eeeeeee............hhhhhh.hhhhhhhhhhh...eeee...hhhhh.eeeeeeehhhhhhhhh.eeeee....eee.hhhhh.........eeeeeeee..eeeeeeeee.............hhhhhhhh.....eeee.........eeee...........hhhhhhhhhhhhh.........ee.hhhh..hhhhhhhhhhhhhhhhhhhh...ee...hhhhhh..hhhhhhhhhhhhh.................eeee..eeeeee....eeeeeehhhhhhhhhhhh...-----------.............--.hhhhhhh...ee.eee....eee.............----.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........................eeeeee........eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3j2n Z  21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRWVPLAADIAGLCARTDNV-----------RGQILNVIKLAIE--QAQRDRLYQEAINPVTGTGGDGYVLYGDKTATSVPSP----NVRRLFNMLKTNIGRSSKYRLFELNNAFTRSSFRTETAQYLQGNKALGGIYEYRVVCDTTNNTPSVIDRNEFVATFYIQPARSINYITLNFVATA 646
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   |     -     | 500       | -|      520       530       540      |  - |     560       570       580       590       600       610       620       630       640      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         484         496         508  |                                 547  552                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    511
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3J2N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3J2N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3J2N)

(-) Gene Ontology  (2, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (COMPL_BPT4 | P11112)
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

Chain U,V,W,X,Y,Z   (TSP_BPT4 | P13332)
biological process
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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Asymmetric/Biological Unit
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 3j2n)
 
  Sites
(no "Sites" information available for 3j2n)
 
  Cis Peptide Bonds
    Arg A:183 - Arg A:184   [ RasMol ]  
    Arg B:183 - Arg B:184   [ RasMol ]  
    Arg C:183 - Arg C:184   [ RasMol ]  
    Arg D:183 - Arg D:184   [ RasMol ]  
    Arg E:183 - Arg E:184   [ RasMol ]  
    Arg F:183 - Arg F:184   [ RasMol ]  
    Gln A:142 - Pro A:143   [ RasMol ]  
    Gln B:142 - Pro B:143   [ RasMol ]  
    Gln C:142 - Pro C:143   [ RasMol ]  
    Gln D:142 - Pro D:143   [ RasMol ]  
    Gln E:142 - Pro E:143   [ RasMol ]  
    Gln F:142 - Pro F:143   [ RasMol ]  
    Gly U:36 - Pro U:37   [ RasMol ]  
    Gly V:36 - Pro V:37   [ RasMol ]  
    Gly W:36 - Pro W:37   [ RasMol ]  
    Gly X:36 - Pro X:37   [ RasMol ]  
    Gly Y:36 - Pro Y:37   [ RasMol ]  
    Gly Z:36 - Pro Z:37   [ RasMol ]  
    Leu A:72 - Pro A:73   [ RasMol ]  
    Leu B:72 - Pro B:73   [ RasMol ]  
    Leu C:72 - Pro C:73   [ RasMol ]  
    Leu D:72 - Pro D:73   [ RasMol ]  
    Leu E:72 - Pro E:73   [ RasMol ]  
    Leu F:72 - Pro F:73   [ RasMol ]  
    Ser U:173 - Ser U:174   [ RasMol ]  
    Ser V:173 - Ser V:174   [ RasMol ]  
    Ser W:173 - Ser W:174   [ RasMol ]  
    Ser X:173 - Ser X:174   [ RasMol ]  
    Ser Y:173 - Ser Y:174   [ RasMol ]  
    Ser Z:173 - Ser Z:174   [ RasMol ]  
    Tyr A:109 - Asn A:110   [ RasMol ]  
    Tyr B:109 - Asn B:110   [ RasMol ]  
    Tyr C:109 - Asn C:110   [ RasMol ]  
    Tyr D:109 - Asn D:110   [ RasMol ]  
    Tyr E:109 - Asn E:110   [ RasMol ]  
    Tyr F:109 - Asn F:110   [ RasMol ]  
    Tyr U:160 - Pro U:161   [ RasMol ]  
    Tyr U:255 - Pro U:256   [ RasMol ]  
    Tyr V:160 - Pro V:161   [ RasMol ]  
    Tyr V:255 - Pro V:256   [ RasMol ]  
    Tyr W:160 - Pro W:161   [ RasMol ]  
    Tyr W:255 - Pro W:256   [ RasMol ]  
    Tyr X:160 - Pro X:161   [ RasMol ]  
    Tyr X:255 - Pro X:256   [ RasMol ]  
    Tyr Y:160 - Pro Y:161   [ RasMol ]  
    Tyr Y:255 - Pro Y:256   [ RasMol ]  
    Tyr Z:160 - Pro Z:161   [ RasMol ]  
    Tyr Z:255 - Pro Z:256   [ RasMol ]  
 

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Molscript
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 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3j2n
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
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  COMPL_BPT4 | P11112
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  TSP_BPT4 | P13332
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
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  COMPL_BPT4 | P11112
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  TSP_BPT4 | P13332
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COMPL_BPT4 | P11112: 3j2m 4hud 4huh
        TSP_BPT4 | P13332: 3fo8 3foa 3foh 3foi 3j2m

(-) Related Entries Specified in the PDB File

3j2m 3j2o