Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  FITTING OF GP18M CRYSTAL STRUCTURE INTO 3D CRYO-EM RECONSTRUCTION OF BACTERIOPHAGE T4 CONTRACTED TAIL
 
Authors :  A. A. Aksyuk, P. G. Leiman, L. P. Kurochkina, M. M. Shneider, V. A. Kostyu V. V. Mesyanzhinov, M. G. Rossmann
Date :  30 Dec 08  (Deposition) - 10 Mar 09  (Release) - 30 May 12  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  16.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Alpha-Beta, Viral Structural Protein, Bacteriophage T4, Tail Sheath, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Aksyuk, P. G. Leiman, L. P. Kurochkina, M. M. Shneider, V. A. Kostyuchenko, V. V. Mesyanzhinov, M. G. Rossmann
The Tail Sheath Structure Of Bacteriophage T4: A Molecular Machine For Infecting Bacteria.
Embo J. V. 28 821 2009
PubMed-ID: 19229296  |  Reference-DOI: 10.1038/EMBOJ.2009.36

(-) Compounds

Molecule 1 - TAIL SHEATH PROTEIN GP18
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 18, GB AAA32541
    Mutation: YES
    Organism Common: BACTERIOPHAGE T4
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Other Details: SIX GP18M FITTED INTO ONE DISK OF THE TAIL SHEATH IN THE CONTRACTED CONFORMATION

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3FOI)

(-) Sites  (0, 0)

(no "Site" information available for 3FOI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FOI)

(-) Cis Peptide Bonds  (36, 36)

Asymmetric/Biological Unit
No.Residues
1Gly A:36 -Pro A:37
2Tyr A:160 -Pro A:161
3Ser A:173 -Ser A:174
4Tyr A:255 -Pro A:256
5Glu A:508 -Thr A:509
6Thr A:509 -Pro A:510
7Gly B:36 -Pro B:37
8Tyr B:160 -Pro B:161
9Ser B:173 -Ser B:174
10Tyr B:255 -Pro B:256
11Glu B:508 -Thr B:509
12Thr B:509 -Pro B:510
13Gly C:36 -Pro C:37
14Tyr C:160 -Pro C:161
15Ser C:173 -Ser C:174
16Tyr C:255 -Pro C:256
17Glu C:508 -Thr C:509
18Thr C:509 -Pro C:510
19Gly D:36 -Pro D:37
20Tyr D:160 -Pro D:161
21Ser D:173 -Ser D:174
22Tyr D:255 -Pro D:256
23Glu D:508 -Thr D:509
24Thr D:509 -Pro D:510
25Gly E:36 -Pro E:37
26Tyr E:160 -Pro E:161
27Ser E:173 -Ser E:174
28Tyr E:255 -Pro E:256
29Glu E:508 -Thr E:509
30Thr E:509 -Pro E:510
31Gly F:36 -Pro F:37
32Tyr F:160 -Pro F:161
33Ser F:173 -Ser F:174
34Tyr F:255 -Pro F:256
35Glu F:508 -Thr F:509
36Thr F:509 -Pro F:510

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FOI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FOI)

(-) Exons   (0, 0)

(no "Exon" information available for 3FOI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:479
 aligned with TSP_BPT4 | P13332 from UniProtKB/Swiss-Prot  Length:659

    Alignment length:490
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510
             TSP_BPT4    21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIDYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTGKNYAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGEKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDARQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNHKYQYDKYNDVNRWVPLAADIAGLCARTDNVSQTWMSPAGYNRGQILNVIKLAIETR 510
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..........eee..hhhhhhhhh.....hhhhhhhhhh......eeeeee................eeeeeee.........eeeeee...eeeeeeeeeee.....eeeee..hhhhhhhhhhh.........eeeee.........eeeeeee............hhhhhh.hhhhhhhhhhh...eeee...hhhhh.eeeeeeehhhhhhhhh.eeeee....eee.hhhhh.........eeeeeeee..eeeeeeeee.............hhhhhhhh.....eeee.........eeee...........hhhhhhhhhhhhh.........ee.hhhh..hhhhhhhhhhhhhhhhhhhh...ee...hhhhhh..hhhhhhhhhhhhh.................ee....eeeeee....eeeeeehhhhhhhhhhhh...-----------............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3foi A  21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRWVPLAADIAGLCARTDNV-----------RGQILNVIKLAIETP 510
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   |     -     | 500       510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         484         496              


Chain B from PDB  Type:PROTEIN  Length:479
 aligned with TSP_BPT4 | P13332 from UniProtKB/Swiss-Prot  Length:659

    Alignment length:490
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510
             TSP_BPT4    21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIDYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTGKNYAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGEKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDARQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNHKYQYDKYNDVNRWVPLAADIAGLCARTDNVSQTWMSPAGYNRGQILNVIKLAIETR 510
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..........eee..hhhhhhhhh.....hhhhhhhhhh......eeeeee................eeeeeee.........eeeeee...eeeeeeeeeee.....eeeee..hhhhhhhhhhh.........eeeee.........eeeeeee............hhhhhh.hhhhhhhhhhh...eeee...hhhhh.eeeeeeehhhhhhhhh.eeeee....eee.hhhhh.........eeeeeeee..eeeeeeeee.............hhhhhhhh.....eeee.........eeee...........hhhhhhhhhhhhh.........ee.hhhh..hhhhhhhhhhhhhhhhhhhh...ee...hhhhhh..hhhhhhhhhhhhh.................ee....eeeeee....eeeeeehhhhhhhhhhhh...-----------............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3foi B  21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRWVPLAADIAGLCARTDNV-----------RGQILNVIKLAIETP 510
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   |     -     | 500       510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         484         496              


Chain C from PDB  Type:PROTEIN  Length:479
 aligned with TSP_BPT4 | P13332 from UniProtKB/Swiss-Prot  Length:659

    Alignment length:490
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510
             TSP_BPT4    21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIDYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTGKNYAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGEKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDARQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNHKYQYDKYNDVNRWVPLAADIAGLCARTDNVSQTWMSPAGYNRGQILNVIKLAIETR 510
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..........eee..hhhhhhhhh.....hhhhhhhhhh......eeeeee................eeeeeee.........eeeeee...eeeeeeeeeee.....eeeee..hhhhhhhhhhh.........eeeee.........eeeeeee............hhhhhh.hhhhhhhhhhh...eeee...hhhhh.eeeeeeehhhhhhhhh.eeeee....eee.hhhhh.........eeeeeeee..eeeeeeeee.............hhhhhhhh.....eeee.........eeee...........hhhhhhhhhhhhh.........ee.hhhh..hhhhhhhhhhhhhhhhhhhh...ee...hhhhhh..hhhhhhhhhhhhh.................ee....eeeeee....eeeeeehhhhhhhhhhhh...-----------............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3foi C  21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRWVPLAADIAGLCARTDNV-----------RGQILNVIKLAIETP 510
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   |     -     | 500       510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         484         496              


Chain D from PDB  Type:PROTEIN  Length:479
 aligned with TSP_BPT4 | P13332 from UniProtKB/Swiss-Prot  Length:659

    Alignment length:490
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510
             TSP_BPT4    21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIDYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTGKNYAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGEKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDARQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNHKYQYDKYNDVNRWVPLAADIAGLCARTDNVSQTWMSPAGYNRGQILNVIKLAIETR 510
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..........eee..hhhhhhhhh.....hhhhhhhhhh......eeeeee................eeeeeee.........eeeeee...eeeeeeeeeee.....eeeee..hhhhhhhhhhh.........eeeee.........eeeeeee............hhhhhh.hhhhhhhhhhh...eeee...hhhhh.eeeeeeehhhhhhhhh.eeeee....eee.hhhhh.........eeeeeeee..eeeeeeeee.............hhhhhhhh.....eeee.........eeee...........hhhhhhhhhhhhh.........ee.hhhh..hhhhhhhhhhhhhhhhhhhh...ee...hhhhhh..hhhhhhhhhhhhh.................ee....eeeeee....eeeeeehhhhhhhhhhhh...-----------............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3foi D  21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRWVPLAADIAGLCARTDNV-----------RGQILNVIKLAIETP 510
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   |     -     | 500       510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         484         496              


Chain E from PDB  Type:PROTEIN  Length:479
 aligned with TSP_BPT4 | P13332 from UniProtKB/Swiss-Prot  Length:659

    Alignment length:490
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510
             TSP_BPT4    21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIDYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTGKNYAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGEKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDARQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNHKYQYDKYNDVNRWVPLAADIAGLCARTDNVSQTWMSPAGYNRGQILNVIKLAIETR 510
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..........eee..hhhhhhhhh.....hhhhhhhhhh......eeeeee................eeeeeee.........eeeeee...eeeeeeeeeee.....eeeee..hhhhhhhhhhh.........eeeee.........eeeeeee............hhhhhh.hhhhhhhhhhh...eeee...hhhhh.eeeeeeehhhhhhhhh.eeeee....eee.hhhhh.........eeeeeeee..eeeeeeeee.............hhhhhhhh.....eeee.........eeee...........hhhhhhhhhhhhh.........ee.hhhh..hhhhhhhhhhhhhhhhhhhh...ee...hhhhhh..hhhhhhhhhhhhh.................ee....eeeeee....eeeeeehhhhhhhhhhhh...-----------............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3foi E  21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRWVPLAADIAGLCARTDNV-----------RGQILNVIKLAIETP 510
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   |     -     | 500       510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         484         496              


Chain F from PDB  Type:PROTEIN  Length:479
 aligned with TSP_BPT4 | P13332 from UniProtKB/Swiss-Prot  Length:659

    Alignment length:490
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510
             TSP_BPT4    21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIDYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTGKNYAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGEKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDARQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNHKYQYDKYNDVNRWVPLAADIAGLCARTDNVSQTWMSPAGYNRGQILNVIKLAIETR 510
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..........eee..hhhhhhhhh.....hhhhhhhhhh......eeeeee................eeeeeee.........eeeeee...eeeeeeeeeee.....eeeee..hhhhhhhhhhh.........eeeee.........eeeeeee............hhhhhh.hhhhhhhhhhh...eeee...hhhhh.eeeeeeehhhhhhhhh.eeeee....eee.hhhhh.........eeeeeeee..eeeeeeeee.............hhhhhhhh.....eeee.........eeee...........hhhhhhhhhhhhh.........ee.hhhh..hhhhhhhhhhhhhhhhhhhh...ee...hhhhhh..hhhhhhhhhhhhh.................ee....eeeeee....eeeeeehhhhhhhhhhhh...-----------............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3foi F  21 NNSTGTAALAGKFQWGPAFQIKQVTNEVDLVNTFGQPTAETADYFMSAMNFLQYGNDLRVVRAVDRDTAKNSSPIAGNIEYTISTPGSNYAVGDKITVKYVSDDIETEGKITEVDADGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAEISSSSSGLAAVITLGKIITDSGILLAEIENAEAAMTAVDFQANLKKYGIPGVVALYPGELGDKIEIEIVSKADYAKGASALLPIYPGGGTRASTAKAVFGYGPQTDSQYAIIVRRNDAIVQSVVLSTKRGGKDIYDSNIYIDDFFAKGGSEYIFATAQNWPEGFSGILTLSGGLSSNAEVTAGDLMEAWDFFADRESVDVQLFIAGSCAGESLETASTVQKHVVSIGDVRQDCLVLCSPPRETVVGIPVTRAVDNLVNWRTAAGSYTDNNFNISSTYAAIDGNYKYQYDKYNDVNRWVPLAADIAGLCARTDNV-----------RGQILNVIKLAIETP 510
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480   |     -     | 500       510
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         484         496
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FOI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FOI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FOI)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (TSP_BPT4 | P13332)
biological process
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 3foi)
 
  Sites
(no "Sites" information available for 3foi)
 
  Cis Peptide Bonds
    Glu A:508 - Thr A:509   [ RasMol ]  
    Glu B:508 - Thr B:509   [ RasMol ]  
    Glu C:508 - Thr C:509   [ RasMol ]  
    Glu D:508 - Thr D:509   [ RasMol ]  
    Glu E:508 - Thr E:509   [ RasMol ]  
    Glu F:508 - Thr F:509   [ RasMol ]  
    Gly A:36 - Pro A:37   [ RasMol ]  
    Gly B:36 - Pro B:37   [ RasMol ]  
    Gly C:36 - Pro C:37   [ RasMol ]  
    Gly D:36 - Pro D:37   [ RasMol ]  
    Gly E:36 - Pro E:37   [ RasMol ]  
    Gly F:36 - Pro F:37   [ RasMol ]  
    Ser A:173 - Ser A:174   [ RasMol ]  
    Ser B:173 - Ser B:174   [ RasMol ]  
    Ser C:173 - Ser C:174   [ RasMol ]  
    Ser D:173 - Ser D:174   [ RasMol ]  
    Ser E:173 - Ser E:174   [ RasMol ]  
    Ser F:173 - Ser F:174   [ RasMol ]  
    Thr A:509 - Pro A:510   [ RasMol ]  
    Thr B:509 - Pro B:510   [ RasMol ]  
    Thr C:509 - Pro C:510   [ RasMol ]  
    Thr D:509 - Pro D:510   [ RasMol ]  
    Thr E:509 - Pro E:510   [ RasMol ]  
    Thr F:509 - Pro F:510   [ RasMol ]  
    Tyr A:160 - Pro A:161   [ RasMol ]  
    Tyr A:255 - Pro A:256   [ RasMol ]  
    Tyr B:160 - Pro B:161   [ RasMol ]  
    Tyr B:255 - Pro B:256   [ RasMol ]  
    Tyr C:160 - Pro C:161   [ RasMol ]  
    Tyr C:255 - Pro C:256   [ RasMol ]  
    Tyr D:160 - Pro D:161   [ RasMol ]  
    Tyr D:255 - Pro D:256   [ RasMol ]  
    Tyr E:160 - Pro E:161   [ RasMol ]  
    Tyr E:255 - Pro E:256   [ RasMol ]  
    Tyr F:160 - Pro F:161   [ RasMol ]  
    Tyr F:255 - Pro F:256   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3foi
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  TSP_BPT4 | P13332
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  TSP_BPT4 | P13332
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TSP_BPT4 | P13332: 3fo8 3foa 3foh 3j2m 3j2n

(-) Related Entries Specified in the PDB File

3fo8 CRYSTAL STRUCTURE OF THE PROTEASE RESISTANT FRAGMENT OF BACTERIOPHAGE T4 TAIL SHEATH PROTEIN, GP18PR (SMALL FRAGMENT OF THE TAIL SHEATH PROTEIN) RELATED ID: EMD-1086 RELATED DB: EMDB 3D CRYO-EM MAP OF THE BACTERIOPHAGE T4 TAIL SHEATH PROTEIN IN THE CONTRACTED CONFORMATION THAT WAS USED IN FITTING
3foa CRYSTAL STRUCTURE OF BACTERIOPHAGE T4 TAIL SHEATH PROTEIN, DELETION MUTANT GP18M, THAT WAS USED FOR THE FITTING
3foh FITTING OF GP18M CRYSTAL STRUCTURE INTO 3D CRYO-EM RECONSTRUCTION OF EXTENDED CONFORMATION OF BACTERIOPHAGE T4 TAIL SHEATH PROTEIN